BAC Information

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BAC

Clone NameB6Ng01-249L11
Chromosome6 (Build37)
Map Location 64,928,094 - 64,929,300
singlet/doubletsinglet
Overlap geneLOC100041833
Upstream geneGrid2, Atoh1
Downstream geneLOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249L11.bB6Ng01-249L11.g
ACCGA057461GA057462
length1,2061,174
definitionB6Ng01-249L11.b B6Ng01-249L11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacatcctattccacaagcagcagagagaaaaagacactggggc
tgtcttcagcatttgacacatcaaagcccacccccaatgacacatttcca
ccaaggccacaccttctaaacatactcaagaagtggcaacagctgtgact
aagcaagcattcaaacacataagcttatggagtcattcttattgaaacca
tgacagagaacatatttccccatatctatttatatatatatatttggttt
ttttcaagacagggttcctcttgtagccctggctgtcctggaactcactc
tgtagactagtctggcctcgaactaaaaaatccgcctgcctctgcctccc
aagtgctggaattaaaggcgtgcaccacgactgccaggcttccccatatt
gtaataacattaaaaatgtgtatcctaacatgcctatcttcagttgaatg
gaaggaaattttcaagtgttctttccatcatacctactgtataattttgc
cagtatccactggaagaccgatagtcataatgtttatgaagaaggccaag
tactttggttttgaacaggataaaagtggtcttgaggttgcagcagtcaa
agcgtcagggtttgggaacaatggaaccagcttaaagatatgactattgc
tactggtggttcagtatttaaagaagagttgaatctaaaccttggaggtt
ttcaaactcatgacttcagaaaagctagagagatcattgccatagaagat
accatgcttctggaaggaaaggatagcaacactcaaattgaaataaacgt
attaaagaaatccctgagcagtgacaccatatagtgaccgtgaaaaggga
aagttgactgaacaactggaatgcccatgctgaaggctgcagggacatgt
gatattgacctgaatgaggagaaagacagagttccagatgcccgcaacac
cacactagcagctctaggatggggctgcacttctgctttgacatcctgct
aatgaagagcagaaagttggtgggcaaattgttgcagtgccttgtttgga
gaattcagatattggcagttttttgatagttgaagaaaattctgttagag
tttctcagattggttattaataacatacttggtactttggggaccatgta
gcaagaagggaatcacttgattcaacgaagctgtcgatgctcactggctg
cttggg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggagacagc
agatgctggcgaggatatggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
gtggatggacctggagggcatcattctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtagacactatgcccctccttagaagtgggaa
caaaacacccatggaaggaggtacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccatttgcatacactagcaagattttatcgaa
aggacccagatgtagcttgttctcttgtgagactatgccggggccctagc
aaacacagaagtgggatgcttcacagtcagctaatggatggacacaaggg
ctcccatggagagctacagaaaggacctaggagctaagggatctgcaccc
tttgtgggatcaccttatgaactacccgtaccccggacctcttgaactct
agctgcctagttatcaaaagatggcctactgccatcactgaaagaaagag
ctcccatgaacacgcaactttataatgccccagatctagtgaatgcccaa
ggtccaaacactggggatagatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_64928094_64929300
seq2: B6Ng01-249L11.b_46_1251

seq1  GAATTCTACATCCTATTCCACAAGCAGCAGAGAGAAAAAGACACTGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCCTATTCCACAAGCAGCAGAGAGAAAAAGACACTGGGGC  50

seq1  TGTCTTCAGCATTTGACACATCAAAGCCCACCCCCAATGACACATTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGCATTTGACACATCAAAGCCCACCCCCAATGACACATTTCCA  100

seq1  CCAAGGCCACACCTTCTAAACATACTCAAGAAGTGGCAACAGCTGTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCACACCTTCTAAACATACTCAAGAAGTGGCAACAGCTGTGACT  150

seq1  AAGCAAGCATTCAAACACATAAGCTTATGGAGTCATTCTTATTGAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCATTCAAACACATAAGCTTATGGAGTCATTCTTATTGAAACCA  200

seq1  TGACAGAGAACATATTTCCCCATATCTATTTATATATATATATTTGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGAACATATTTCCCCATATCTATTTATATATATATATTTGGTTT  250

seq1  TTTTCAAGACAGGGTTCCTCTTGTAGCCCTGGCTGTCCTGGAACTCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGACAGGGTTCCTCTTGTAGCCCTGGCTGTCCTGGAACTCACTC  300

seq1  TGTAGACTAGTCTGGCCTCGAACTAAAAAATCCGCCTGCCTCTGCCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACTAGTCTGGCCTCGAACTAAAAAATCCGCCTGCCTCTGCCTCCC  350

seq1  AAGTGCTGGAATTAAAGGCGTGCACCACGACTGCCAGGCTTCCCCATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGAATTAAAGGCGTGCACCACGACTGCCAGGCTTCCCCATATT  400

seq1  GTAATAACATTAAAAATGTGTATCCTAACATGCCTATCTTCAGTTGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAACATTAAAAATGTGTATCCTAACATGCCTATCTTCAGTTGAATG  450

seq1  GAAGGAAATTTTCAAGTGTTCTTTCCATCATACCTACTGTATAATTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATTTTCAAGTGTTCTTTCCATCATACCTACTGTATAATTTTGC  500

seq1  CAGTATCCACTGGAAGACCGATAGTCATAATGTTTATGAAGAAGGCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCCACTGGAAGACCGATAGTCATAATGTTTATGAAGAAGGCCAAG  550

seq1  TACTTTGGTTTTGAACAGGATAAAAGTGGTCTTGAGGTTGCAGCAGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGGTTTTGAACAGGATAAAAGTGGTCTTGAGGTTGCAGCAGTCAA  600

seq1  AGCGTCAGGGTTTGGGAACAATGGAACCAGCTTAAAGATATGACTATTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCAGGGTTTGGGAACAATGGAACCAGCTTAAAGATATGACTATTGC  650

seq1  TACTGGTGGTTCAGTATTTAAAGAAGAGTTGAATCTAAACCTTGGAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGGTTCAGTATTTAAAGAAGAGTTGAATCTAAACCTTGGAGGTT  700

seq1  TTCAAACTCATGACTTCAGAAAAGCTAGAGAGATCATTGCCATAGAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTCATGACTTCAGAAAAGCTAGAGAGATCATTGCCATAGAAGAT  750

seq1  ACCATGCTTCTGGAAGGAAAGGATAGCAACACTCAAATTGAAATAAACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCTTCTGGAAGGAAAGGATAGCAACACTCAAATTGAAATAAACGT  800

seq1  ATTAAAGAAATCCCTGAGCAGTGACACCATATAGTGACCGTGAAAAGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGAAATCCCTGAGCAGTGACACCATATAGTGACCGTGAAAAGGGA  850

seq1  AAGTTGACTGAACAACTGGAATGCCCATGCTGAAGGCTGCAGGGACATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACTGAACAACTGGAATGCCCATGCTGAAGGCTGCAGGGACATGT  900

seq1  GATATTGACCTGAATGAGGAGAAAGACAGAGTTCCAGATGCCCGCAACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGACCTGAATGAGGAGAAAGACAGAGTTCCAGATGCCCGCAACAC  950

seq1  CACACTAGCAGCTCTAGGATGGGGCTGCAC-TCTGCTTTGACATCCTGCT  999
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACACTAGCAGCTCTAGGATGGGGCTGCACTTCTGCTTTGACATCCTGCT  1000

seq1  AATGAAGAGCAGAAAGTTGGTGGGCAAA-TGTTGCAGTGCC-TGTTGGGA  1047
      |||||||||||||||||||||||||||| |||||||||||| |||| || 
seq2  AATGAAGAGCAGAAAGTTGGTGGGCAAATTGTTGCAGTGCCTTGTTTGG-  1049

seq1  AGAATCCAGATATTGGCAGTTCTTTGATAGTTG-AGAAAATTCTG-TAGA  1095
      ||||| ||||||||||||||| ||||||||||| ||||||||||| ||||
seq2  AGAATTCAGATATTGGCAGTTTTTTGATAGTTGAAGAAAATTCTGTTAGA  1099

seq1  GTTTCTCAGAATTGGTTA-TAATAACATACTTGGAAATTTTGTGAGCATG  1144
      ||||||||| |||||||| ||||||||||||||| | ||| | || ||| 
seq2  GTTTCTCAG-ATTGGTTATTAATAACATACTTGGTACTTTGGGGACCAT-  1147

seq1  GTAGGAAAGAGGG-ATCAC-TGATTCAACAGAGGCTGTCCGGGTTGCTTC  1192
      |||| ||  |||| ||||| ||||||||| || ||||||   | ||| ||
seq2  GTAGCAAGAAGGGAATCACTTGATTCAAC-GAAGCTGTC---GATGC-TC  1192

seq1  ACTGGCTGCTGTGGG  1207
      |||||||||| ||||
seq2  ACTGGCTGCT-TGGG  1206