BAC Information

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BAC

Clone NameB6Ng01-250H08
Chromosome6 (Build37)
Map Location 106,841,479 - 106,842,623
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn
Downstream genePpia-ps6_1128.1, Lrrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250H08.bB6Ng01-250H08.g
ACCGA057999GA058000
length8361,142
definitionB6Ng01-250H08.b B6Ng01-250H08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaaatagcgtaattctattcaaaaatagcattaatatatttgta
tattacgtcttagagcagttcctaaagaatatatacagatttatcccatg
ctctgtgatagctaagatacggaaaattcatgcataccataaggtgctta
aacacttaatgcttaacttagtgatgagatccagggagatttttacccta
ttcctggtggtatgtcaactggtgtcattgcacaggtcttgttttaggta
actatatttttgagatttcatgggtgccacatgcagcttcattgttatag
aagacattatcctcttatctgtcacagtagcaaatatggagacaaagtgg
ggagcagaaactgaaggaaaggtcatccagagcatccagagacacgctcc
tccctcccccggagatgcattccatatacagatacgctactttggatgct
ggatgccaagaagcacatgctggcaggaccctaacatggctgtctcctga
gaggctctgccagagcctgacatatacagagacagatgtttgcagtcaac
cattgaactgatcacagggtccctaatgaaggagtttgagaaaggactga
aggaactgaagggatttgcaaccctataggaagaacaacaatatcaatca
actagagctctaaaccaccaaccaaggagtacacatggagggatcaatgg
ctccagccatatatgtagcataggatggccttgttgggaatcaatgggag
aagaggcccttggtcctgtgaaggctcgatgctccagtgtaggggaattc
aagggcagggaggcaggagtgggtggggtgggtgga

gaattcaagagaaagagagcagatgtatgtaggagttggatggaggaaag
ggaagagagaaaattacataattatattttaattttagaaaaaaattaaa
aagaatattcacaaagggaacttgattcattattatggagacttggaaaa
gcagcgaataaccaaggttattaagtacacacatgagtaaataatgaata
aatacataaataaatgctatggggatggagataatcctgactttacatgt
caatggcaaatgctgagttcaggatgaatagggtcttgttgccatggaac
atcatggaatattccctgtagaaatggaaggcaggtgaccctaattctaa
cccctgttcatcctgacatcttagtgaccctgagcaagtcttttagacat
tgtttctgtgggtctactcatcttgtaaaataagacagaagtcctgtgaa
cacagggtgtttgccacagggacaggccttggccagtctgtcagccccat
ccatagggacagcatgcttagaaacaggagggatctttgtgttgccagag
gaatgacttgatgtgagaatgacagggaggccttttctgtaaaaaaaaaa
aaagtcaatacagcttggcttcctgccagggacaaacatatcctcttttg
ttctccagtggtatagacgtgaaaaggtctccagaagctgtgtgaatggc
cgcttcatcaacaggcactgaagccaaacataaatggttaaatattcaca
atcgataaaacaaatctgtaaactttgatctagctgggaaacagaacaag
ctcccaggaaagcactaaggagcagaagaaacaaggatgctaaacagaaa
ctcagggctttcctctttcccactctacccaggtgcataatcccagcaaa
caaagactagaaattcctttcttctaatgagcactcaaatgatgaatttc
ataatcctggtgtctctcttggaacagaatgaccatgactaattaccctt
caatatttaaaagaaaaaaatcactctttccctgtggaacatgcactcct
ttctcccctatctccactacagagctcatttcaactagaagatgtatatt
tagatcactggtggaaagcgacggctgataatattgcctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106841479_106842623
seq2: B6Ng01-250H08.g_67_1208

seq1  GAATTCAAGAGAAAGAGAGCAGATGTATGTAGGAGTTGGATGGAGGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGAAAGAGAGCAGATGTATGTAGGAGTTGGATGGAGGAAAG  50

seq1  GGAAGAGAGAAAATTACATAATTATATTTTAATTTTAGAAAAAAATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGAAAATTACATAATTATATTTTAATTTTAGAAAAAAATTAAA  100

seq1  AAGAATATTCACAAAGGGAACTTGATTCATTATTATGGAGACTTGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATTCACAAAGGGAACTTGATTCATTATTATGGAGACTTGGAAAA  150

seq1  GCAGCGAATAACCAAGGTTATTAAGTACACACATGAGTAAATAATGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGAATAACCAAGGTTATTAAGTACACACATGAGTAAATAATGAATA  200

seq1  AATACATAAATAAATGCTATGGGGATGGAGATAATCCTGACTTTACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAATAAATGCTATGGGGATGGAGATAATCCTGACTTTACATGT  250

seq1  CAATGGCAAATGCTGAGTTCAGGATGAATAGGGTCTTGTTGCCATGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCAAATGCTGAGTTCAGGATGAATAGGGTCTTGTTGCCATGGAAC  300

seq1  ATCATGGAATATTCCCTGTAGAAATGGAAGGCAGGTGACCCTAATTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGAATATTCCCTGTAGAAATGGAAGGCAGGTGACCCTAATTCTAA  350

seq1  CCCCTGTTCATCCTGACATCTTAGTGACCCTGAGCAAGTCTTTTAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTTCATCCTGACATCTTAGTGACCCTGAGCAAGTCTTTTAGACAT  400

seq1  TGTTTCTGTGGGTCTACTCATCTTGTAAAATAAGACAGAAGTCCTGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTGGGTCTACTCATCTTGTAAAATAAGACAGAAGTCCTGTGAA  450

seq1  CACAGGGTGTTTGCCACAGGGACAGGCCTTGGCCAGTCTGTCAGCCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTGTTTGCCACAGGGACAGGCCTTGGCCAGTCTGTCAGCCCCAT  500

seq1  CCATAGGGACAGCATGCTTAGAAACAGGAGGGATCTTTGTGTTGCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGGACAGCATGCTTAGAAACAGGAGGGATCTTTGTGTTGCCAGAG  550

seq1  GAATGACTTGATGTGAGAATGACAGGGAGGCCTTTTCTGTAAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACTTGATGTGAGAATGACAGGGAGGCCTTTTCTGTAAAAAAAAAA  600

seq1  AAAGTCAATACAGCTTGGCTTCCTGCCAGGGACAAACATATCCTCTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAATACAGCTTGGCTTCCTGCCAGGGACAAACATATCCTCTTTTG  650

seq1  TTCTCCAGTGGTATAGACGTGAAAAGGTCTCCAGAAGCTGTGTGAATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGTGGTATAGACGTGAAAAGGTCTCCAGAAGCTGTGTGAATGGC  700

seq1  CGCTTCATCAACAGGCACTGAAGCCAAACAT-AATGGTTAAATATTCACA  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGCTTCATCAACAGGCACTGAAGCCAAACATAAATGGTTAAATATTCACA  750

seq1  ATCGATAAAACAAATCTGTAAAC-TTGATCTAGCTGGG-AACAGAACAAG  797
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  ATCGATAAAACAAATCTGTAAACTTTGATCTAGCTGGGAAACAGAACAAG  800

seq1  CTCCCAGGAAAGCACTAAGGAGCAG-AGAAACAAGGATGCTAAACAGAAA  846
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCCCAGGAAAGCACTAAGGAGCAGAAGAAACAAGGATGCTAAACAGAAA  850

seq1  CTCAGGGCTTTCCTCTTT-CCACTCTACCCAGGTGCAT-ATTCCAGCAAA  894
      |||||||||||||||||| ||||||||||||||||||| || ||||||||
seq2  CTCAGGGCTTTCCTCTTTCCCACTCTACCCAGGTGCATAATCCCAGCAAA  900

seq1  CAAAGACTAG-AATTCCTTTCTTCTAATGAGCACTCAAAAATGATGAA-T  942
      |||||||||| |||||||||||||||||||||||||  |||||||||| |
seq2  CAAAGACTAGAAATTCCTTTCTTCTAATGAGCACTC--AAATGATGAATT  948

seq1  TCATAATCCT-GTGTCTCTCTTGGAAACAGAATGACCATGACTAATTACC  991
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  TCATAATCCTGGTGTCTCTCTTGG-AACAGAATGACCATGACTAATTACC  997

seq1  C-TCAATATTTAAAAGAAAAAAAATCACTCTTTCCCTGT-GAACATGCAC  1039
      | |||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  CTTCAATATTTAAAAG-AAAAAAATCACTCTTTCCCTGTGGAACATGCAC  1046

seq1  TCCTTTCTCCCCTATCTCCCACTACAGAGCTCCATTTTAAACCTAGAAGA  1089
      ||||||||||||||||| ||||||||||||| ||||| ||  ||||||||
seq2  TCCTTTCTCCCCTATCT-CCACTACAGAGCT-CATTTCAA--CTAGAAGA  1092

seq1  TGTAATTAAATTAGAATTCACTGTGGAAAAGCAGCGGCTGATAATAATTG  1139
      ||||    | |||||  ||||||  | |||||  ||||||||||| ||||
seq2  TGTA---TATTTAGA--TCACTGGTGGAAAGCGACGGCTGATAAT-ATTG  1136

seq1  CTTTTC  1145
      | ||||
seq2  CCTTTC  1142


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