BAC Information

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BAC

Clone NameB6Ng01-250I21
Chromosome6 (Build37)
Map Location 89,885,155 - 89,970,315
singlet/doubletdoublet
Overlap geneV1ra2, V1rb8
Upstream gene4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4
Downstream geneV1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250I21.bB6Ng01-250I21.g
ACCGA058067GA058068
length1,0111,179
definitionB6Ng01-250I21.b B6Ng01-250I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,885,155 - 89,885,588)(89,969,138 - 89,970,315)
sequence
gaattcttacagtttttgattagacattaatttagtaaaacaccatgacc
aaacccaagctggctgagaaagcatttattgcatgttcctgctagaaata
catcatgcaggatagttgggggaagaagttaaggcagagacctataggta
ggaactgatgcacaatcatgaaagagtgctatttactagctttttgcttc
atggttttccttgtctgtattagtaagtaactcccagcttggggcctata
ctcacactaagctgggctttctcacctagataaccaatctaaattcacca
caaatatgcccacatctcaatctggtaggggaattatctgaactcatatt
accttacctctttctcaatgatttactgtgtgtcaaaacaaaacaaaacc
aaaaaccaaaaaccaaaaaccaaaaaccaaaaaccaaaaaccaaaaacca
aaaaccaaaaaccaaaaaccaaaaaccaaaaaccaaaaatcaaccccccc
aaaaaaaagacacaaagaaacaaagaaaccaaaatagcaaatagctggaa
aagctgtatccttgtaaggttgacacaaaaacacatcactgttacactat
aaacttgtctccttttgttctcaagatatcatactaatatcaacatttca
agataaaaattcaatatactttaaaagcttaatctcccctaaatcttcaa
atcttgcttaacatgcaaagcctctccaaaattttcagcctctagaacat
ccagtttctcttacattttcaaaatttctgtaaaatacatgtagtcttta
aacctcaaagtctccttaaaactccaacatgcattttaaaagttcaaaat
ctcttaattcttggctcctgcaacataaataataacttaaatattttctt
gttccaaaagggagaaccaggcacagtcacaataaattcaacaaagtcca
acagtgtaaactgtatgacctttctgggacttactaacatcttctgggcc
cctcacagtgc
gaattctctgaactgacattaccttccctttttctaactgatttaccttg
tgtcatagcaaacaaaaaacaaacaaactaaaagagctggcacagctgac
cccttgtcaggttgacacccacacacacacacacacacacacaaaaaccc
attacttatactataatcttgtcccttcttgttcccaagatatcacacta
atatcaacattttagtataaaaattccatgtactttaaacgttctatttt
ctataaatcttcaaatctccctcaacatacaaaacctctctaaaattttc
agtctctaaaatatccagtttctcttacattttcaaagtatttgtaaaat
atatatagtctctttaaaattccaaagtctccataaaactccaaaatacc
ttttaaatttcaaagtatcttaattcttggcccctgaaacataaataata
acttaaatattttctttttctgaaaaggaagaaccaatttctgtcttcat
tagaccttctgttgctttgataaaataccatgatgaaaaacaagttgaga
agaaaggattattttaccatatagtttgtaggtcttcattcagagaagct
ggggacaaacctcaagacaggggcctggaggcaggaagtgagggagaagc
catggtgtagtgttgtgtacctcattgcccctttagcttgctctagctac
tttctcatggtacctaggaccaccagcccatgtgtggaaatgtccacagt
tggttgagacatatcatatcaaatcaatcaactatcaagaaaatgtacca
ggggccagtctcctgtcagcattttctcagttgagtttccctcttctaaa
ataactctagcttgtgtcaaattaacatgaaactatgtagcacagacacc
aagtatatggggcaggtaattttataaacaaaggtcctgttacagagtaa
aaatttatcactgggaagttaaaggtgtgagtgaaatcattttaatacta
atttagaacaatgagatgtctatgtaggtattagagaaagtaaaggggat
ataattcaccagtacaaggtactgttagcatagacttgaggccagttagt
tagtgaaaacattaacagagcctgatacccttgaccaatcgtagcattta
gaaaagttaatcctctataaaagtatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_89885155_89885588
seq2: B6Ng01-250I21.b_45_552

seq1  GAATTCTTACAGTTTTTTGATTAGACATTAACTTAGTAAAACACCATTAC  50
      |||||||||||| |||||||||||||||||| ||||||||||||||| ||
seq2  GAATTCTTACAG-TTTTTGATTAGACATTAATTTAGTAAAACACCATGAC  49

seq1  CAAATCCATGCTGGCTGGGAAAGCCTTTATTGCATGTTACTGCTAGTAAT  100
      |||| ||| |||||||| |||||| ||||||||||||| ||||||| |||
seq2  CAAACCCAAGCTGGCTGAGAAAGCATTTATTGCATGTTCCTGCTAGAAAT  99

seq1  ACATCATCCAGGATAGTTGGGGGAAGAAGTTAAGGCAGAGACCTATAGGT  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATGCAGGATAGTTGGGGGAAGAAGTTAAGGCAGAGACCTATAGGT  149

seq1  AGGAACTGATGCACAATCATGAAAAAGTGCTATTTACTAGCTTTTTGCTT  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGAACTGATGCACAATCATGAAAGAGTGCTATTTACTAGCTTTTTGCTT  199

seq1  CATGGTTTTCCTTGTCTGTATTCTTAAGTAACTCCCAGCTCGGGGCCTAT  250
      ||||||||||||||||||||||  |||||||||||||||| |||||||||
seq2  CATGGTTTTCCTTGTCTGTATTAGTAAGTAACTCCCAGCTTGGGGCCTAT  249

seq1  ATTCACACTAAGCTGGGCTTTCTCACCTAGATAACCAATCTAAATTCACC  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACTAAGCTGGGCTTTCTCACCTAGATAACCAATCTAAATTCACC  299

seq1  ACAAATATGCCCACATCTCAATCTGGTAGGGGAATTATCTGAACTGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACAAATATGCCCACATCTCAATCTGGTAGGGGAATTATCTGAACTCATAT  349

seq1  TACCTTACCTCTTTCTCAATGATTTACTGTGTGTCAAAACAAAACAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTACCTCTTTCTCAATGATTTACTGTGTGTCAAAACAAAACAAAAC  399

seq1  AAAACACCAAAAACC---ACCCCCCCCCCAAAAAAAA-------------  434
       ||| ||||||||||   | ||     |||||||  |             
seq2  CAAAAACCAAAAACCAAAAACCAAAAACCAAAAACCAAAAACCAAAAACC  449

seq1  --------------------------------------------------  434
                                                        
seq2  AAAAACCAAAAACCAAAAACCAAAAACCAAAAACCAAAAATCAACCCCCC  499

seq1  ---------  434
               
seq2  CAAAAAAAA  508

seq1: chr6_89969138_89970315
seq2: B6Ng01-250I21.g_69_1247 (reverse)

seq1  TCCATAATTTTATAAAGGATTAACCTTTTCTAAAAATGCTACAGAATTTT  50
      |||||| ||||||| |||||||| |||||||  ||||||||| ||    |
seq2  TCCATACTTTTATAGAGGATTAA-CTTTTCT--AAATGCTAC-GA----T  42

seq1  TGTTTCAGGGTATCA-GCTCTGTTAAATGTTTTCACTAACTAACT-GCCT  98
      || |  ||||||||| |||||||| |||||||||||||||||||| ||||
seq2  TGGTCAAGGGTATCAGGCTCTGTT-AATGTTTTCACTAACTAACTGGCCT  91

seq1  CGGGTCTAATGCCTTAACCAGTACCCTGTACTTGTGAATTATATCCCCTT  148
      |  |||| ||||  ||| ||||||| |||||| |||||||||||||||||
seq2  CAAGTCT-ATGC--TAA-CAGTACCTTGTACTGGTGAATTATATCCCCTT  137

seq1  TACCTTTCTCTAATACCTTACATTAAGACATCTTA-TGTTCTAAATAAGT  197
      || |||||||||||||| |||||  |||||||| | |||||||||| |||
seq2  TA-CTTTCTCTAATACC-TACAT--AGACATCTCATTGTTCTAAATTAGT  183

seq1  A-TAAAATGATTTCACTCACACCCTTAACTT-CCAGTGATAAATTTTTAC  245
      | ||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  ATTAAAATGATTTCACTCACACCTTTAACTTCCCAGTGATAAATTTTTAC  233

seq1  TCTGTAACAGGA-CTTTGTTTATAAAATTTGTTGCTCCATATGCTTGGTG  294
      |||||||||||| ||||||||||||||||   ||| |||||| |||||||
seq2  TCTGTAACAGGACCTTTGTTTATAAAATTACCTGCCCCATATACTTGGTG  283

seq1  TCTGTGCTACATAGTTTCATATTAATTTGACACAAGCTAAAGTTATTTTA  344
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  TCTGTGCTACATAGTTTCATGTTAATTTGACACAAGCTAGAGTTATTTTA  333

seq1  GAAGAGGGAAACTCAACTGAGAAAATGCTGACAGGAGACTGGCCCCTGGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGAAACTCAACTGAGAAAATGCTGACAGGAGACTGGCCCCTGGT  383

seq1  ACATTTTCTTGATAGTTGATTGATTTGATATGATATGTCTCAACCAACTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTTGATAGTTGATTGATTTGATATGATATGTCTCAACCAACTG  433

seq1  TGGACATTTCCACACATGGGCTGGTGGTCCTGGGTACCATGAGAAAGTAG  494
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGACATTTCCACACATGGGCTGGTGGTCCTAGGTACCATGAGAAAGTAG  483

seq1  CTAGAGCAAGCTAAAGGGGCAATGAGGTACACAACACTACTCCATGGCTT  544
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAGAGCAAGCTAAAGGGGCAATGAGGTACACAACACTACACCATGGCTT  533

seq1  CTCCCTCACTTCCTGCCTCCAGGCCCCTGTCTTGAGGTTTGTCCCCAGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCACTTCCTGCCTCCAGGCCCCTGTCTTGAGGTTTGTCCCCAGCT  583

seq1  TCTCTGAATGAAGACCTACAAACTATATGGTAAAATAATCCTTTCTTCTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAATGAAGACCTACAAACTATATGGTAAAATAATCCTTTCTTCTC  633

seq1  AACTTGTTTTTCATCATGGTATTTTATCAAAGCAACAGAAGGTCTAATGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTTTTTCATCATGGTATTTTATCAAAGCAACAGAAGGTCTAATGA  683

seq1  AGACAGAAATTGGTTCTTCCTTTTCAGAAAAAGAAAATATTTAAGTTATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAATTGGTTCTTCCTTTTCAGAAAAAGAAAATATTTAAGTTATT  733

seq1  ATTTATGTTTCAGGGGCCCAGAATTAAGATACTTTGAAATTTAAAAGGTA  794
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTATGTTTCAGGGGCCAAGAATTAAGATACTTTGAAATTTAAAAGGTA  783

seq1  TTTTGGAGTTTTATGGAGACTTTGGAGTTTTACAGAGACTATATATATTT  844
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  TTTTGGAGTTTTATGGAGACTTTGGAATTTTAAAGAGACTATATATATTT  833

seq1  TACAAAAACTTTGAAAATGTAAGAGAAACTGGATATTTTAGAGACTGAAA  894
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATACTTTGAAAATGTAAGAGAAACTGGATATTTTAGAGACTGAAA  883

seq1  ATTTTAGAGAGGTTTTGTATGTTGAGGGAGATTTGAAGATTTATAGAAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAGAGGTTTTGTATGTTGAGGGAGATTTGAAGATTTATAGAAAA  933

seq1  TAGAACGTTTAAAGTACATGGAATTTTTATATTAAAATGTTGATATTAGT  994
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAGAACGTTTAAAGTACATGGAATTTTTATACTAAAATGTTGATATTAGT  983

seq1  GTGATATCTTGGGAACAAGAAGGGACAAGATTATAGTATAAGTAATGGGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATCTTGGGAACAAGAAGGGACAAGATTATAGTATAAGTAATGGGT  1033

seq1  TT-------------TGTGTGTGTGTGTGTGTCAACCTGACAAGGGGTCA  1081
      ||             |||||||||||| ||||||||||||||||||||||
seq2  TTTTGTGTGTGTGTGTGTGTGTGTGTGGGTGTCAACCTGACAAGGGGTCA  1083

seq1  GCTGTGCCAGCTCCTTTAGTTTGTTTGTTTCTTTGTTTGCTTTGACACAA  1131
      ||||||||||||| |||||||||||||||| |||||||||| ||||||||
seq2  GCTGTGCCAGCTCTTTTAGTTTGTTTGTTT-TTTGTTTGCTATGACACAA  1132

seq1  GGTAAATCATTTAGAAAAAGGGAAGGTAATGTCAGTTCAGAGAATTC  1178
      ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTAAATCAGTTAGAAAAAGGGAAGGTAATGTCAGTTCAGAGAATTC  1179