BAC Information

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BAC

Clone NameB6Ng01-251A06
Chromosome6 (Build37)
Map Location 100,968,591 - 101,094,963
singlet/doubletdoublet
Overlap geneEG545870, LOC100043321
Upstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2
Downstream genePdzrn3, EG666084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251A06.bB6Ng01-251A06.g
ACCGA058397GA058398
length1,1431,042
definitionB6Ng01-251A06.b B6Ng01-251A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,093,831 - 101,094,963)(100,968,591 - 100,969,600)
sequence
gaattcccctgcagcactttcagaacaaagcatgcttctttgggttttat
tcagatcggtttttttctgtgtaaatggccagctttctctttagcttcca
gttacaataatcctcaaagggcatggggtatgaggacatgagcctgtgac
taggttttccttctaaccagcaggaactgaccttggtacactaacattct
tcagaaataatgagccttccttcactggtttcccaagttgaaacatattc
tttaattcagtaagtcaccaaatacccttaagaactccatggatttggca
gacttcaccaatgtcctgaaaaaaatatatatatgctcagtctagggctg
agcaggtaaagatacttgcagctaagctagtgacttgtgttcaattactg
ggacccacatggtggagggagcgagccaattcccacaagttgtcctctga
cctccacaagagcatgtatgcgtgaacacaaaataaataaatgtcaaata
tcaggcagagctcagggagtcttgtagaagaatgggggttagaattgagc
aacccagaggtggaaaggatgccacaagaagacctacagagtcaactaac
ctgggtccatggggactcacagagactgaatcaccaaccaaacaccatgc
aggccctggacctaggccccctatacatttgtagcagatgtgctgcttgg
ccttcatgtgggtcatctgctaacaattggagcaggactctgttgcctgc
cttggatctcctttccctacctggactgcctggttgggcctcagtgggag
aggatgtgcctagtcctattgggactagatgcccccagggtggggtggta
cccaaggggggcttccccttctctgaagagaatcagaatagggatttgta
aggattaggataaaaggaagaaataggggttcccattcgagatgtaaagt
taatttaagtaattgattaatttgattgattaattggattgaattaattt
aaaaaagaacctatgagatgagtgggctttgcctatcatagtcacagatt
gaaagactgaaaagcttgggagaggtggctgattgggaggccactggggg
cagcttgaccttggtagctctgtgtccccacttaatcctatgt

gaattcagtgtttttaattgctgagtgagtctctgtgttcttaatagact
cactactgttcaaaacgatgaaacccaaagtctctatgaaattccaggca
aactccatgaacccatgtaaacacagtaagaaatttcaatatttccaata
tgcaatgacataaaggaagagtgggagagtcatacaggaagattggatca
cagaaaaaaagaaaagccaagaaggtcaagaaattaaaaaatataattct
attcaagttatcactttggctttgatgggttggggcattccattcactag
agtcttaccaccttcagcagaaacgggctctcccaggctggcttcctatg
aacctgcagctctctcagcggacagcctacattgttggcgtttccagcat
cctgacatctccattgcagctaagacttcaccctcagcagtttcatcccc
agccagtttaggaactcactgcagggagtctaacctgttacacagcctct
gggctcacaggctttgttctaaaaccttagtgcatgggctcagtcctgag
agtcaatggaagttctcagttgggtttagatatgtgacttgaattaggta
tagccaatgtgcttatagggaaatatgaaaggagatttagcccaaatcag
tagacactctgaaaagggagaaatgaaattttaaagcagttctaattcat
atttccctgatggctttggatattgaatacattttcaagcattttttggc
catttgtatttcttggagaattgtctagtgggagaggggcctgaagttga
ttagcctgtatactgattggctgttttcattttttgtgtctaatttttta
cagttctttatatatcccagatattagtttccttttcctgaagtgccatt
ggcaaagatttttatttttttcctctttcatagactacctcttcattctg
atgactgtttcctttgtgatgtgaaaccctttaaattcatgtaatcattt
gtcagttcttgagattatttctgtgtattgagtctagtcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_101093831_101094963
seq2: B6Ng01-251A06.b_46_1188 (reverse)

seq1  ACATAGTGATTAAGTGGGG-CACAGAGCTACCAAGTGTC-AGCTG-CCCC  47
      |||||| |||||||||||| ||||||||||||||| ||| ||||| ||||
seq2  ACATAG-GATTAAGTGGGGACACAGAGCTACCAAG-GTCAAGCTGCCCCC  48

seq1  AGTGGCCTCACAA-CAGCCAACCTCT-CCAAGC-TTTCTGTCTT--CATC  92
      ||||||||| ||| ||||| |||||| |||||| |||| |||||   |||
seq2  AGTGGCCTCCCAATCAGCC-ACCTCTCCCAAGCTTTTCAGTCTTTCAATC  97

seq1  TGTGAACTATGAATAGCAAA-CCCACTCATCTCATAGGTTCTTTTTTAAA  141
      |||| |||||||   ||||| |||||||||||||||||||||||||||||
seq2  TGTG-ACTATGATAGGCAAAGCCCACTCATCTCATAGGTTCTTTTTTAAA  146

seq1  TTAA-TCAAT-CAATTAATCAATC-AATTAATCAATTACTT-AATTAACT  187
      |||| ||||| ||||||||||||| |||||||||||||||| ||||||||
seq2  TTAATTCAATCCAATTAATCAATCAAATTAATCAATTACTTAAATTAACT  196

seq1  TTACATCTCG-ATTGGAACCCCTATTTCTTCCTTTTATCCTAATCCTTAC  236
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  TTACATCTCGAATGGGAACCCCTATTTCTTCCTTTTATCCTAATCCTTAC  246

seq1  AAATCCCTATTCTGATTCTCTTCAGAGAAGGGGAAGCCCCCCTTGGGTAC  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCTATTCTGATTCTCTTCAGAGAAGGGGAAGCCCCCCTTGGGTAC  296

seq1  CACCCCACCCTGGGGGCATCTAGTCCCAATAGGACTAGGCACATCCTCTC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACCCTGGGGGCATCTAGTCCCAATAGGACTAGGCACATCCTCTC  346

seq1  CCACTGAGGCCCAACCAGGCAGTCCAGGTAGGGAAAGGAGATCCAAGGCA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGGCCCAACCAGGCAGTCCAGGTAGGGAAAGGAGATCCAAGGCA  396

seq1  GGCAACAGAGTCCTGCTCCAATTGTTAGCAGATGACCCACATGAAGGCCA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAGAGTCCTGCTCCAATTGTTAGCAGATGACCCACATGAAGGCCA  446

seq1  AGCAGCACATCTGCTACAAATGTATAGGGGGCCTAGGTCCAGGGCCTGCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCACATCTGCTACAAATGTATAGGGGGCCTAGGTCCAGGGCCTGCA  496

seq1  TGGTGTTTGGTTGGTGATTCAGTCTCTGTGAGTCCCCATGGACCCAGGTT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTGGTTGGTGATTCAGTCTCTGTGAGTCCCCATGGACCCAGGTT  546

seq1  AGTTGACTCTGTAGGTCTTCTTGTGGCATCCTTTCCACCTCTGGGTTGCT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACTCTGTAGGTCTTCTTGTGGCATCCTTTCCACCTCTGGGTTGCT  596

seq1  CAATTCTAACCCCCATTCTTCTACAAGACTCCCTGAGCTCTGCCTGATAT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTAACCCCCATTCTTCTACAAGACTCCCTGAGCTCTGCCTGATAT  646

seq1  TTGACATTTATTTATTTTGTGTTCACGCATACATGCTCTTGTGGAGGTCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTTATTTATTTTGTGTTCACGCATACATGCTCTTGTGGAGGTCA  696

seq1  GAGGACAACTTGTGGGAATTGGCTCGCTCCCTCCACCATGTGGGTCCCAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAACTTGTGGGAATTGGCTCGCTCCCTCCACCATGTGGGTCCCAG  746

seq1  TAATTGAACACAAGTCACTAGCTTAGCTGCAAGTATCTTTACCTGCTCAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAACACAAGTCACTAGCTTAGCTGCAAGTATCTTTACCTGCTCAG  796

seq1  CCCTAGACTGAGCATATATATATTTTTTTCAGGACATTGGTGAAGTCTGC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGACTGAGCATATATATATTTTTTTCAGGACATTGGTGAAGTCTGC  846

seq1  CAAATCCATGGAGTTCTTAAGGGTATTTGGTGACTTACTGAATTAAAGAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCATGGAGTTCTTAAGGGTATTTGGTGACTTACTGAATTAAAGAA  896

seq1  TATGTTTCAACTTGGGAAACCAGTGAAGGAAGGCTCATTATTTCTGAAGA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCAACTTGGGAAACCAGTGAAGGAAGGCTCATTATTTCTGAAGA  946

seq1  ATGTTAGTGTACCAAGGTCAGTTCCTGCTGGTTAGAAGGAAAACCTAGTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGTGTACCAAGGTCAGTTCCTGCTGGTTAGAAGGAAAACCTAGTC  996

seq1  ACAGGCTCATGTCCTCATACCCCATGCCCTTTGAGGATTATTGTAACTGG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCATGTCCTCATACCCCATGCCCTTTGAGGATTATTGTAACTGG  1046

seq1  AAGCTAAAGAGAAAGCTGGCCATTTACACAGAAAAAAACCGATCTGAATA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAAGAGAAAGCTGGCCATTTACACAGAAAAAAACCGATCTGAATA  1096

seq1  AAACCCAAAGAAGCATGCTTTGTTCTGAAAGTGCTGCAGGGGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAAGAAGCATGCTTTGTTCTGAAAGTGCTGCAGGGGAATTC  1143


seq1: chr6_100968591_100969600
seq2: B6Ng01-251A06.g_101_1107

seq1  TGTTCTTAATAGACTCACTACTGTTCAAAACGATGAAACCCAAAGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAATAGACTCACTACTGTTCAAAACGATGAAACCCAAAGTCTCT  50

seq1  ATGAAATTCCAGGCAAACTCCATGAACCCATGTAAACACAGTAAGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTCCAGGCAAACTCCATGAACCCATGTAAACACAGTAAGAAATT  100

seq1  TCAATATTTCCAATATGCAATGACATAAAGGAAGAGTGGGAGAGTCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTTCCAATATGCAATGACATAAAGGAAGAGTGGGAGAGTCATAC  150

seq1  AGGAAGATTGGATCACAGAAAAAAAGAAAAGCCAAGAAGGTCAAGAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATTGGATCACAGAAAAAAAGAAAAGCCAAGAAGGTCAAGAAATT  200

seq1  AAAAAATATAATTCTATTCAAGTTATCACTTTGGCTTTGATGGGTTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATAATTCTATTCAAGTTATCACTTTGGCTTTGATGGGTTGGGG  250

seq1  CATTCCATTCACTAGAGTCTTACCACCTTCAGCAGAAACGGGCTCTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATTCACTAGAGTCTTACCACCTTCAGCAGAAACGGGCTCTCCCA  300

seq1  GGCTGGCTTCCTATGAACCTGCAGCTCTCTCAGCGGACAGCCTACATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTTCCTATGAACCTGCAGCTCTCTCAGCGGACAGCCTACATTGT  350

seq1  TGGCGTTTCCAGCATCCTGACATCTCCATTGCAGCTAAGACTTCACCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTTTCCAGCATCCTGACATCTCCATTGCAGCTAAGACTTCACCCTC  400

seq1  AGCAGTTTCATCCCCAGCCAGTTTAGGAACTCACTGCAGGGAGTCTAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTTCATCCCCAGCCAGTTTAGGAACTCACTGCAGGGAGTCTAACC  450

seq1  TGTTACACAGCCTCTGGGCTCACAGGCTTTGTTCTAAAACCTTAGTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACAGCCTCTGGGCTCACAGGCTTTGTTCTAAAACCTTAGTGCAT  500

seq1  GGGCTCAGTCCTGAGAGTCAATGGAAGTTCTCAGTTGGGTTTAGATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGTCCTGAGAGTCAATGGAAGTTCTCAGTTGGGTTTAGATATGT  550

seq1  GACTTGAATTAGGTATAGCCAATGTGCTTATAGGGAAATATGAAAGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAATTAGGTATAGCCAATGTGCTTATAGGGAAATATGAAAGGAGA  600

seq1  TTTAGCCCAAATCAGTAGACACTCTGAAAAGGGAGAAATGAAATTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCCAAATCAGTAGACACTCTGAAAAGGGAGAAATGAAATTTTAAA  650

seq1  GCAGTTCTAATTCATATTTCCCTGATGGCTTTGGATATTGAATACATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTAATTCATATTTCCCTGATGGCTTTGGATATTGAATACATTTT  700

seq1  CAAGCATTTTTTGGCCATTTGTATTTCTTGGAGAATTGTCTAGTGGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTTTTTGGCCATTTGTATTTCTTGGAGAATTGTCTAGTGGGAGA  750

seq1  GGGGCCTGAAGTTGATTAGCCTGTATACTGATTGGCTGTTTTCATTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTGAAGTTGATTAGCCTGTATACTGATTGGCTGTTTTCATTTTTT  800

seq1  GTGTCTAA-TTTTTACAGTTCTTTATATATCCCAGATATTAGTT--CCTT  847
      |||||||| |||||||||||||||||||||||||||||||||||  | ||
seq2  GTGTCTAATTTTTTACAGTTCTTTATATATCCCAGATATTAGTTTCCTTT  850

seq1  TCCTGAAGTGCCATTGGCAAAGATTTTTA-TTTTTTCCTCTTTCATAGAC  896
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCTGAAGTGCCATTGGCAAAGATTTTTATTTTTTTCCTCTTTCATAGAC  900

seq1  TACCTCTTCATTCTGATGACTGTTTCCTTTGTGATGTGAAAACCCTTTAA  946
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACCTCTTCATTCTGATGACTGTTTCCTTTGTGATGTG-AAACCCTTTAA  949

seq1  ATTCATGTAATTCCATTTGTCAGTTCTTGAGATTATTTCCTGTGTTATTG  996
      |||||||||||  ||||||||||||||||||||||||| ||||| |||| 
seq2  ATTCATGTAAT--CATTTGTCAGTTCTTGAGATTATTT-CTGTG-TATT-  994

seq1  GAGTCCTAGTCAGA  1010
      |||| |||||||||
seq2  GAGT-CTAGTCAGA  1007


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