BAC Information

Click to search

BAC

Clone NameB6Ng01-251J05
Chromosome6 (Build37)3 (Build37)
Map Location 74,110,046 - 74,110,580128,580,895 - 128,582,047
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251J05.bB6Ng01-251J05.g
ACCGA058801GA058802
length8781,138
definitionB6Ng01-251J05.b B6Ng01-251J05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,110,046 - 74,110,580)(128,580,895 - 128,582,047)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctcagcatctaacgagatgatcatgtggtttttgttttt
aagtttgtttatatactggattacattgatggatttccgtatattaaacc
atccctgcatccctgggatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggattcggttagcaagaactttattgaggatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttgggt
ctttttgtggtttaggtataagagtaattgtggcttcatagaatgagttg
ggtagagtaccttccgtttctattttgtggaatagtttgtgaagaactgg
aattaggtcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggttatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgttcatttcgtccaggtttttca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctatgccctctagtgagtctatctaagcttttatcta
tcttgttgattttctcaaagaaccaactcctcgtttgggttaattctttt
gaatagttcttcttgttttccacttggtttgatttccactccctgagttt
gataatttttccgccgtcctactcctct

ttttaaaatcagaagttatggaaggtttttgggtaagccggagaatccct
gggcacctgtccaaaatgaacctctaagtcttttgaagtctccccatcac
taatatacacaacgcagtctaatccagctgtctgcctgctttcctgtctc
cctttctctttcttcattctgtcctgaggtacccataactatgcactacg
gaaaacatttaggagaatgaagtttggtttgcctcttggaaaagttccca
cacagcgaacctagggttctacttggtgatgggagtgggcaaacaggtag
tgcctgagtcccttgcctttcctggtgacatacttttacacagtataatt
cctacctaactttcaaattgcaaaatattttatttatgaggacaatcata
tattttcaggatttgttttctattttgagaaaccatattattttaaatag
cagcaaaaatataattgtagaaaatcaaagtaattaacactttgatgcca
taaggcatttcattatatagtattaaagttataaggcttttctgttaagt
ccctggaattttaatttcttttacagctatgcttaatagtttggttagta
actttactatcagactttcatagtccctttgtttaaaataaaataatgtt
tgtcaagggagtatattttactaaaaaaagaaatattaaatttaaagcaa
gacagaatctgaacacagcctttaagccatctttgggaaatacatatcaa
attgtcataagaagatatttcaattaagtaaaatacttaaactagcatgt
tgttttggtttctcctttctcagtcaactcttgctgagaaatgaatattc
attttttctttatccactctatgaaactgcttctgtagcagaaattcttc
aaatatttctaagcctatcttccaaaacagtagcagagtcaacgtgaaga
attgcatgatgtatcacaagccccacacaaattaaacacacagcagggca
aagaagccagctcaacaatttctctacccatgttttatttgttgttgtct
tgtttaaagttccattcatgtaataaagactatccactggaagaccggaa
ctaaatgccaatccagtcagcaacatactaaccaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_74110046_74110580
seq2: B6Ng01-251J05.b_430_922 (reverse)

seq1  AGAGGAGTA-GACGGCAG-GAAATTATCAAACTCAGGG-GT-CAAATC-A  45
      ||||||||| |||||| |  |||||||||||||||||| ||  ||||| |
seq2  AGAGGAGTAGGACGGCGGAAAAATTATCAAACTCAGGGAGTGGAAATCAA  50

seq1  ACCAAGTGG-AAACAAGAAGGACTATTC-AAAGAATTAA-CCAAAGGACG  92
      ||||||||| |||||||||| ||||||| |||||||||| ||||| || |
seq2  ACCAAGTGGAAAACAAGAAGAACTATTCAAAAGAATTAACCCAAACGAGG  100

seq1  AGTTAGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT  142
      |||| |||||||||||||||||||||||||||||||  ||||| ||||||
seq2  AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAAAGCTTAGATAGACT  150

seq1  CACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAACTGAAA  192
      |||||||||||| |||||||| |||||||||||||||||||||| |||||
seq2  CACTAGAGGGCATAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAA  200

seq1  AGGGAGACATAACAACAGATCCTGACGAAATCCAAAACACCATCAGATCC  242
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCC  250

seq1  TTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGA  292
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  TTCTACAAAAGGCTATACTCAACAAAACTGAAAAACCTGGACGAAATGAA  300

seq1  CAAATTTCTGGAAAGATACCAGGTACCAAAGTTGAATCAGGATCAAATTG  342
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  CAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTG  350

seq1  ACCATCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAAT  392
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCATCTAAACAGTCCCATAACCCCTAAAGAAATAGAAGCAGTTATTAAT  400

seq1  AGTCTCCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  442
      |||||||||||                                       
seq2  AGTCTCCCAGC--------------------------------------C  412

seq1  AAAAAAAGCCCAGGACCAGACAGGTTTACTGCAGAGTTCTATCAGACCTT  492
      ||||||||||||||||||||  |||||| |||||||||||||||||||||
seq2  AAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTT  462

seq1  CAAAGAAGATCGAATTCCAGTTCTGCAGAAAGTATTTCACAAA  535
      ||||||||| | |||||||||||| || |||            
seq2  CAAAGAAGACCTAATTCCAGTTCTTCACAAA------------  493


seq1: chr3_128580895_128582047
seq2: B6Ng01-251J05.g_79_1216 (reverse)

seq1  TGGTTGGTTAGT---TGGTTGGCTGGTTTTGCCAATTTTGGTCTCTGGTT  47
      ||||||||||||   | | || |||| || ||  |||| |   || ||| 
seq2  TGGTTGGTTAGTATGTTGCTGACTGGATTGGC--ATTTAG--TTCCGGT-  45

seq1  CTTTCAAGTTGATAGTCTTTTATTTACATGAAATGGGACTTTAAAAACAA  97
        ||| ||| ||||||||||   ||||||| ||||| |||||  ||||||
seq2  -CTTCCAGTGGATAGTCTTT--ATTACATG-AATGGAACTTT--AAACAA  89

seq1  GACAAACAAACAAATAAAACATGGGTTAGAGAAATGGTGGAGCTGGCTTC  147
      |||||   ||||||||||||||||| ||||||||| || |||||||||||
seq2  GACAA--CAACAAATAAAACATGGG-TAGAGAAATTGTTGAGCTGGCTTC  136

seq1  TTTGCCCTTGCTGTGTGTTTAATTTGTGTGGGGCTTTGTGATAACATCAT  197
      ||||||| |||||||||||||||||||||||||| ||||||| |||||||
seq2  TTTGCCC-TGCTGTGTGTTTAATTTGTGTGGGGC-TTGTGAT-ACATCAT  183

seq1  GCAATTCTTCACGTTGACTCTGCTACTGTTTTTGGAAGATAGGCTTAGAA  247
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCAATTCTTCACGTTGACTCTGCTACTG-TTTTGGAAGATAGGCTTAGAA  232

seq1  ATATTTGAAGAATTTCTGCTACAGAAGCAGTTTCATAGAGTGGATAAAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAAGAATTTCTGCTACAGAAGCAGTTTCATAGAGTGGATAAAGA  282

seq1  AAAAATGAATATTCATTTCTCAGCAAGAGTTGACTGAGAAAGGAGAAACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAATATTCATTTCTCAGCAAGAGTTGACTGAGAAAGGAGAAACC  332

seq1  AAAACAACATGCTAGTTTAAGTATTTTACTTAATTGAAATATCTTCTTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACATGCTAGTTTAAGTATTTTACTTAATTGAAATATCTTCTTAT  382

seq1  GACAATTTGATATGTATTTCCCAAAGATGGCTTAAAGGCTGTGTTCAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTGATATGTATTTCCCAAAGATGGCTTAAAGGCTGTGTTCAGAT  432

seq1  TCTGTCTTGCTTTAAATTTAATATTTCTTTTTTTAGTAAAATATACTCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTGCTTTAAATTTAATATTTCTTTTTTTAGTAAAATATACTCCC  482

seq1  TTGACAAACATTATTTTATTTTAAACAAAGGGACTATGAAAGTCTGATAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAACATTATTTTATTTTAAACAAAGGGACTATGAAAGTCTGATAG  532

seq1  TAAAGTTACTAACCAAACTATTAAGCATAGCTGTAAAAGAAATTAAAATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTACTAACCAAACTATTAAGCATAGCTGTAAAAGAAATTAAAATT  582

seq1  CCAGGGACTTAACAGAAAAGCCTTATAACTTTAATACTATATAATGAAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGACTTAACAGAAAAGCCTTATAACTTTAATACTATATAATGAAAT  632

seq1  GCCTTATGGCATCAAAGTGTTAATTACTTTGATTTTCTACAATTATATTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATGGCATCAAAGTGTTAATTACTTTGATTTTCTACAATTATATTT  682

seq1  TTGCTGCTATTTAAAATAATATGGTTTCTCAAAATAGAAAACAAATCCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTATTTAAAATAATATGGTTTCTCAAAATAGAAAACAAATCCTG  732

seq1  AAAATATATGATTGTCCTCATAAATAAAATATTTTGCAATTTGAAAGTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATGATTGTCCTCATAAATAAAATATTTTGCAATTTGAAAGTTA  782

seq1  GGTAGGAATTATACTGTGTAAAAGTATGTCACCAGGAAAGGCAAGGGACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAATTATACTGTGTAAAAGTATGTCACCAGGAAAGGCAAGGGACT  832

seq1  CAGGCACTACCTGTTTGCCCACTCCCATCACCAAGTAGAACCCTAGGTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTACCTGTTTGCCCACTCCCATCACCAAGTAGAACCCTAGGTTC  882

seq1  GCTGTGTGGGAACTTTTCCAAGAGGCAAACCAAACTTCATTCTCCTAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGGGAACTTTTCCAAGAGGCAAACCAAACTTCATTCTCCTAAAT  932

seq1  GTTTTCCGTAGTGCATAGTTATGGGTACCTCAGGACAGAATGAAGAAAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCGTAGTGCATAGTTATGGGTACCTCAGGACAGAATGAAGAAAGA  982

seq1  GAAAGGGAGACAGGAAAGCAGGCAGACAGCTGGATTAGACTGCGTTGTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAGACAGGAAAGCAGGCAGACAGCTGGATTAGACTGCGTTGTGT  1032

seq1  ATATTAGTGATGGGGAGACTTCAAAAGACTTAGAGGTTCATTTTGGACAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTGATGGGGAGACTTCAAAAGACTTAGAGGTTCATTTTGGACAG  1082

seq1  GTGCCCAGGGATTCTCCGGCTTACCCAAAAACCTTCCATAACTTCTGATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAGGGATTCTCCGGCTTACCCAAAAACCTTCCATAACTTCTGATT  1132

seq1  TTAAAA  1153
      ||||||
seq2  TTAAAA  1138


| Home | SequenceCutter | Blast | Download |