BAC Information

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BAC

Clone NameB6Ng01-252D04
Chromosome6 (Build37)
Map Location 108,448,730 - 108,653,548
singlet/doubletdoublet
Overlap geneItpr1, LOC677205, Bhlhb2
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneArl8b, Edem1, EG627371, LOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252D04.bB6Ng01-252D04.g
ACCGA059259GA059260
length9271,182
definitionB6Ng01-252D04.b B6Ng01-252D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,652,623 - 108,653,548)(108,448,730 - 108,449,921)
sequence
gaattcacagagagctacctgactcctccacccaagttctggattaaagt
cctgtgccaccaagtgcagcccagcttttctctttctgaacatttagtaa
gtttttttgtttgtttgttttctttgagatagagtctcatttagtcaaag
actggcctcaaacttagtatctacctaaggctggccttgaactcctgatc
ctccagcttctatctcccatgtactgggattgtgtgtatgtttcactatg
actataaaggttaaaactattttgcccaccttccttctctctcctttgct
tgctcaatcttgttctttctcttacacatcccacctccacccccaccccc
aaagatgtgctcaaacacaagaccgtccatatacaaaaaaagtgttctat
ggctgagctgcatctagcctaacacctttggtcatttttaaaggctacct
ttataaatatgactcccagccccaggataatcaccagattttgtctctaa
tccagcacactacctttaccaagactaccaggaagggaaacctgagacag
gtagcaagcacacacacacacacacacacacacacacacacacacacaca
cacacacacacacacacctacctactgtcttgtgagctctgctctcagcc
ccacccgttcctgctcccctgaggtctagcaggccggtgctgggcgtggt
gggggtgtcccatttgtaattgggctttatacttccctgacccctgcttc
acccttcttccaccttccccacttgcccagggagcctgaatagaagagga
agtgaaaagcagcagagcctgggctttggagatcagcaccttttatctgg
ggacttgtaactaaaaatgaagaagacttggtatttctgtgtgtgtgttt
tgtgtgtgtgtgagtgtgtgtgtgtgc

gaattcttgggcatctcatctggtactggagatctgggggagacccagaa
gttcagtatttgaactctggctaaccctcagattccacaactggtggagt
tgacagggtacgaaggacttttcgatggcccagcctttgcccttctcttc
tcccttgtaccccaatgaagcttctgttcatgagttctccaatgacctga
tgtcatgtgactgtgtgccagctctgaaacaaattcttgttcttactgtt
gggatcaagactgggaacaagagtggacttgtagggatctagcagaagta
agggccatggcaagctctagccctctgacatgcagcagtcaacaacctca
ctggcttcatctgtttccacagcccagcctgtcttgtactggtgtgcccg
aaacatgtctttctggagcagcatctccttcaacctggccgtcctgatga
acctgctggtggcgtttttctatccatttaaaggagtaaggggaggtaac
catacctttctttctttaagtgttctgccttatctttttgagacaccgtc
ttgctagaagtacaagctggcctggaacctaggctcctcctctcctgccg
tggccttctggtgataggctgtcatcctgctttttctgtttttctatggt
ttctattgctgtcataaaacaccattaccaaaagcagtttggggaagaga
agaacttctacatcacaatccgtcattgaaggaaataagggcagaagtcc
tgaggcaggagtcaaagtgctgttcacaggcttggtcctcatagctagct
cagcctacattttgattttgctaacagagaattgcaaaaaatcacagaca
tgcactacattttgatatgttcgtttcttaataaaataaatactaagtaa
tccattggcatccaggtctaaaataaaatgttattaaaatcttattttaa
aaaaaatctgaagcctgaagaatccaattttgagtacccaggactacttg
cccagggggtcagaatcaacctcagggatcaatcatcatcaagaaaatgc
aacaccggtcttgcccacaagcccattaagaatggggacactgtaactat
gtacttcttccaatgaatctagctgtggtataaatgacatacaactaccg
catacggcgtatctaccatacgtggttaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108652623_108653548
seq2: B6Ng01-252D04.b_49_975 (reverse)

seq1  GCACACACACACACACACACACACAC-ACACACACACACAGAAATACCAA  49
      |||||||||||||| ||||||||||| | |||||||||||||||||||||
seq2  GCACACACACACACTCACACACACACAAAACACACACACAGAAATACCAA  50

seq1  GTCTTCTTCATTTTTAGTTACAAGT-CCCAGATAAAAGGTGCTGATCTCC  98
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTCTTCTTCATTTTTAGTTACAAGTCCCCAGATAAAAGGTGCTGATCTCC  100

seq1  AAAGCCCAGGCTCTGCCTGCTTTTCACTTCCTCTTCTATTCAGGCTCCCT  148
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAGGCTCTG-CTGCTTTTCACTTCCTCTTCTATTCAGGCTCCCT  149

seq1  GGGCAAGTGGGGAAGGTGGAAGAAGGGTGAAGCAGGGGTCAGGGAAGTAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGTGGGGAAGGTGGAAGAAGGGTGAAGCAGGGGTCAGGGAAGTAT  199

seq1  AAAGCCCAATTACAAATGGGACACCCCCACCACGCCCAGCACCGGCCTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAATTACAAATGGGACACCCCCACCACGCCCAGCACCGGCCTGC  249

seq1  TAGACCTCAGGGGAGCAGGAACGGGTGGGGCTGAGAGCAGAGCTCACAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTCAGGGGAGCAGGAACGGGTGGGGCTGAGAGCAGAGCTCACAAG  299

seq1  ACAGTAGGTAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGTAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  349

seq1  TGTGTGTGTGTGTGTGTGTGCTTGCTACCTGTCTCAGGTTTCCCTTCCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGCTTGCTACCTGTCTCAGGTTTCCCTTCCTG  399

seq1  GTAGTCTTGGTAAAGGTAGTGTGCTGGATTAGAGACAAAATCTGGTGATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTTGGTAAAGGTAGTGTGCTGGATTAGAGACAAAATCTGGTGATT  449

seq1  ATCCTGGGGCTGGGAGTCATATTTATAAAGGTAGCCTTTAAAAATGACCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGGCTGGGAGTCATATTTATAAAGGTAGCCTTTAAAAATGACCA  499

seq1  AAGGTGTTAGGCTAGATGCAGCTCAGCCATAGAACACTTTTTTTGTATAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTAGGCTAGATGCAGCTCAGCCATAGAACACTTTTTTTGTATAT  549

seq1  GGACGGTCTTGTGTTTGAGCACATCTTTGGGGGTGGGGGTGGAGGTGGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGTCTTGTGTTTGAGCACATCTTTGGGGGTGGGGGTGGAGGTGGGA  599

seq1  TGTGTAAGAGAAAGAACAAGATTGAGCAAGCAAAGGAGAGAGAAGGAAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGAGAAAGAACAAGATTGAGCAAGCAAAGGAGAGAGAAGGAAGG  649

seq1  TGGGCAAAATAGTTTTAACCTTTATAGTCATAGTGAAACATACACACAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAAATAGTTTTAACCTTTATAGTCATAGTGAAACATACACACAAT  699

seq1  CCCAGTACATGGGAGATAGAAGCTGGAGGATCAGGAGTTCAAGGCCAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTACATGGGAGATAGAAGCTGGAGGATCAGGAGTTCAAGGCCAGCC  749

seq1  TTAGGTAGATACTAAGTTTGAGGCCAGTCTTTGACTAAATGAGACTCTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAGATACTAAGTTTGAGGCCAGTCTTTGACTAAATGAGACTCTAT  799

seq1  CTCAAAGAAAACAAACAAACAAAAAAACTTACTAAATGTTCAGAAAGAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAAAACAAACAAACAAAAAAACTTACTAAATGTTCAGAAAGAGA  849

seq1  AAAGCTGGGCTGCACTTGGTGGCACAGGACTTTAATCCAGAACTTGGGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGGCTGCACTTGGTGGCACAGGACTTTAATCCAGAACTTGGGTG  899

seq1  GAGGAGTCAGGTAGCTCTCTGTGAATTC  926
      ||||||||||||||||||||||||||||
seq2  GAGGAGTCAGGTAGCTCTCTGTGAATTC  927


seq1: chr6_108448730_108449921
seq2: B6Ng01-252D04.g_70_1251

seq1  GAATTCTTGGGCATCTCATCTGGTACTGGAGATCTGGGGGAGACCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGCATCTCATCTGGTACTGGAGATCTGGGGGAGACCCAGAA  50

seq1  GTTCAGTATTTGAACTCTGGCTAACCCTCAGATTCCACAACTGGTGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTATTTGAACTCTGGCTAACCCTCAGATTCCACAACTGGTGGAGT  100

seq1  TGACAGGGTACGAAGGACTTTTCGATGGCCCAGCCTTTGCCCTTCTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGTACGAAGGACTTTTCGATGGCCCAGCCTTTGCCCTTCTCTTC  150

seq1  TCCCTTGTACCCCAATGAAGCTTCTGTTCATGAGTTCTCCAATGACCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTACCCCAATGAAGCTTCTGTTCATGAGTTCTCCAATGACCTGA  200

seq1  TGTCATGTGACTGTGTGCCAGCTCTGAAACAAATTCTTGTTCTTACTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTGACTGTGTGCCAGCTCTGAAACAAATTCTTGTTCTTACTGTT  250

seq1  GGGATCAAGACTGGGAACAAGAGTGGACTTGTAGGGATCTAGCAGAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAAGACTGGGAACAAGAGTGGACTTGTAGGGATCTAGCAGAAGTA  300

seq1  AGGGCCATGGCAAGCTCTAGCCCTCTGACATGCAGCAGTCAACAACCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATGGCAAGCTCTAGCCCTCTGACATGCAGCAGTCAACAACCTCA  350

seq1  CTGGCTTCATCTGTTTCCACAGCCCAGCCTGTCTTGTACTGGTGTGCCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCATCTGTTTCCACAGCCCAGCCTGTCTTGTACTGGTGTGCCCG  400

seq1  AAACATGTCTTTCTGGAGCAGCATCTCCTTCAACCTGGCCGTCCTGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTCTTTCTGGAGCAGCATCTCCTTCAACCTGGCCGTCCTGATGA  450

seq1  ACCTGCTGGTGGCGTTTTTCTATCCATTTAAAGGAGTAAGGGGAGGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGGTGGCGTTTTTCTATCCATTTAAAGGAGTAAGGGGAGGTAAC  500

seq1  CATACCTTTCTTTCTTTAAGTGTTCTGCCTTATCTTTTTGAGACACCGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTTTCTTTCTTTAAGTGTTCTGCCTTATCTTTTTGAGACACCGTC  550

seq1  TTGCTAGAAGTACAAGCTGGCCTGGAACCTAGGCTCCTCCTCTCCTGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGAAGTACAAGCTGGCCTGGAACCTAGGCTCCTCCTCTCCTGCCG  600

seq1  TGGCCTTCTGGTGATAGGCTGTCATCCTGCTTTTTCTGTTTTTCTATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTCTGGTGATAGGCTGTCATCCTGCTTTTTCTGTTTTTCTATGGT  650

seq1  TTCTATTGCTGTCATAAAACACCATTACCAAAAGCAGTTTGGGGAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTGCTGTCATAAAACACCATTACCAAAAGCAGTTTGGGGAAGAGA  700

seq1  AGAACTTCTACATCACAATCCGTCATTGAAGGAAATAAGGGCAGAAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCTACATCACAATCCGTCATTGAAGGAAATAAGGGCAGAAGTCC  750

seq1  TGAGGCAGGAGTCAAAGTGCTGTTCACAGGCTTGGTCCTCATAGCTAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGGAGTCAAAGTGCTGTTCACAGGCTTGGTCCTCATAGCTAGCT  800

seq1  CAGCCTACATTTTGATTTTGCTAACAGAGAATTGCAAAAAATCACAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTACATTTTGATTTTGCTAACAGAGAATTGCAAAAAATCACAGACA  850

seq1  TGCACTACATTTTGATATGTTCGTTTCTTAAATAAATTAAATACTAAGTA  900
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  TGCACTACATTTTGATATGTTCGTTTCTT-AATAAAATAAATACTAAGTA  899

seq1  ATCCCATTGGCATCCAGGTCTAAAATAAAATGTTATTAAAATCTTATTTT  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-CCATTGGCATCCAGGTCTAAAATAAAATGTTATTAAAATCTTATTTT  948

seq1  AAAAAAAATTCTGAAGCCTG-AGAATCCAAATTTTGAGTACCCAGGACTA  999
      |||||||| ||||||||||| ||||||| |||||||||||||||||||||
seq2  AAAAAAAA-TCTGAAGCCTGAAGAATCC-AATTTTGAGTACCCAGGACTA  996

seq1  CTTGCCCA-GGGGTCAG-ATCAACCTCAGGGATCAATCATCAATCAAGAA  1047
      |||||||| |||||||| ||||||||||||||||||||||| ||||||||
seq2  CTTGCCCAGGGGGTCAGAATCAACCTCAGGGATCAATCATC-ATCAAGAA  1045

seq1  AATGCAACA-CGGTCTTGCCCACAAGCCAATTA--GATGGGGACACTTTG  1094
      ||||||||| |||||||||||||||||| ||||   |||||||||||   
seq2  AATGCAACACCGGTCTTGCCCACAAGCCCATTAAGAATGGGGACACT---  1092

seq1  TTAACTTATGTACCTTCTTCCCAAATGATTCTAGCTTGTGTCAT-ATTGA  1143
       |||| |||||| ||||||||  ||||| |||||| ||||  || | |||
seq2  GTAAC-TATGTA-CTTCTTCC--AATGAATCTAGC-TGTGGTATAAATGA  1137

seq1  CATACAACTAACCCGCATACGGGCGTATTCTACCATAGCTGGTTAAATA  1192
      ||||||||||  |||||||| |||||| |||||||||  ||||||||||
seq2  CATACAACTA--CCGCATAC-GGCGTA-TCTACCATACGTGGTTAAATA  1182


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