BAC Information

Click to search

BAC

Clone NameB6Ng01-253J09
ChromosomeX (Build37)6 (Build37)
Map Location 140,555,211 - 140,555,746106,841,479 - 106,842,540
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC209541, Chrdl1, Pak3, Capn6, Dcx
Downstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253J09.bB6Ng01-253J09.g
ACCGA060278GA060279
length1,1131,072
definitionB6Ng01-253J09.b B6Ng01-253J09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,555,211 - 140,555,746)(106,841,479 - 106,842,540)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcactttccttagttagagtcacgccaagatattttatatta
tttgtgactattgagaagggtgttgttcctaattcttctcagcctgttta
tttctttgtatagagaaaggcattgactgttgagcttattatatccagct
acttcacgaggctgttttatcaagttaggagttctctggttagaattttt
aggttcacctata
gaattcaagagaaagagagcagatgtatgtaggagttggatggaggaaag
ggaagagagaaaattacataattatattttaattttagaaaaaaattaaa
aagaatattcacaaagggaacttgattcattattatggagacttggaaaa
gcagcgaataaccaaggttattaagtacacacatgagtaaataatgaata
aatacataaataaatgctatggggatggagataatcctgactttacatgt
caatggcaaatgctgagttcaggatgaatagggtcttgttgccatggaac
atcatggaatattccctgtagaaatggaaggcaggtgaccctaattctaa
cccctgttcatcctgacatcttagtgaccctgagcaagtcttttagacat
tgtttctgtgggtctactcatcttgtaaaataagacagaagtcctgtgaa
cacagggtgtttgccacagggacaggccttggccagtctgtcagccccat
ccatagggacagcatgcttagaaacaggagggatctttgtgttgccagag
gaatgacttgatgtgagaatgacagggaggccttttctgtaaaaaaaaaa
aaagtcaatacagcttggcttcctgccagggacaaacatatcctcttttg
ttctccagtggtatagacgtgaaaaggtctccagaagctgtgtgaatggc
cgcttcatcaacaggcactgaagccaaacataatggttaaatattcacaa
tcgataaaacaaatctgtaaacttgatctagctgggaacagaacaagctc
ccaggaaagcactaaggagcagagaaacaaggatgctaaacagaaacttc
agggcttttcctctttccactctacccaggtgcattattccagcaaacaa
agactagaatttccttttcttctaatgagcactcaaaaatgatgaattca
ataatcctggtgtctcttcttggaaacagaatgaccatgactaaattacc
cttcaatattaaaaggaaaaaaatcactctttccctgtgaacatgcactc
ctttccttccctatctcccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_140555211_140555746
seq2: B6Ng01-253J09.b_628_1156 (reverse)

seq1  TATAAGTGACCCTAAAAATTCT-ACCAGAGAACTCCTAAACCTGAT-AAA  48
      |||| |||| |||||||||||| |||||||||||||| ||| |||| |||
seq2  TATAGGTGAACCTAAAAATTCTAACCAGAGAACTCCT-AACTTGATAAAA  49

seq1  CAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGG  98
      |||| || |||||||||||||||||  ||||| |||||   ||||||| |
seq2  CAGCCTC-GTGAAGTAGCTGGATAT--AATAAGCTCAA--CAGTCAAT-G  93

seq1  CCTTTCTCTATACAAAG-AATAAACAGGCTGAGAAAGAAATTAGGGAAAC  147
      ||||||||||||||||| |||||||||||||||||   |||||||  |||
seq2  CCTTTCTCTATACAAAGAAATAAACAGGCTGAGAA--GAATTAGG--AAC  139

seq1  AACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTC  189

seq1  TAACTAAGG-AGGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAA  246
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGGAAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAA  239

seq1  GAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT  289

seq1  GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATC  339

seq1  TACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAATGA  389

seq1  ATTGGAAGGAGCAATTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGGAGCAATTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGA  439

seq1  TAGCAAAAAGTCTTCTCAAGGATAAAAGAACTTCTGGCGGAATCACCATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAAAGTCTTCTCAAGGATAAAAGAACTTCTGGCGGAATCACCATG  489

seq1  CCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAA  536
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAA  529

seq1: chr6_106841479_106842540
seq2: B6Ng01-253J09.g_65_1136

seq1  GAATTCAAGAGAAAGAGAGCAGATGTATGTAGGAGTTGGATGGAGGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGAAAGAGAGCAGATGTATGTAGGAGTTGGATGGAGGAAAG  50

seq1  GGAAGAGAGAAAATTACATAATTATATTTTAATTTTAGAAAAAAATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGAAAATTACATAATTATATTTTAATTTTAGAAAAAAATTAAA  100

seq1  AAGAATATTCACAAAGGGAACTTGATTCATTATTATGGAGACTTGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATTCACAAAGGGAACTTGATTCATTATTATGGAGACTTGGAAAA  150

seq1  GCAGCGAATAACCAAGGTTATTAAGTACACACATGAGTAAATAATGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGAATAACCAAGGTTATTAAGTACACACATGAGTAAATAATGAATA  200

seq1  AATACATAAATAAATGCTATGGGGATGGAGATAATCCTGACTTTACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAATAAATGCTATGGGGATGGAGATAATCCTGACTTTACATGT  250

seq1  CAATGGCAAATGCTGAGTTCAGGATGAATAGGGTCTTGTTGCCATGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCAAATGCTGAGTTCAGGATGAATAGGGTCTTGTTGCCATGGAAC  300

seq1  ATCATGGAATATTCCCTGTAGAAATGGAAGGCAGGTGACCCTAATTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGAATATTCCCTGTAGAAATGGAAGGCAGGTGACCCTAATTCTAA  350

seq1  CCCCTGTTCATCCTGACATCTTAGTGACCCTGAGCAAGTCTTTTAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTTCATCCTGACATCTTAGTGACCCTGAGCAAGTCTTTTAGACAT  400

seq1  TGTTTCTGTGGGTCTACTCATCTTGTAAAATAAGACAGAAGTCCTGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTGGGTCTACTCATCTTGTAAAATAAGACAGAAGTCCTGTGAA  450

seq1  CACAGGGTGTTTGCCACAGGGACAGGCCTTGGCCAGTCTGTCAGCCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTGTTTGCCACAGGGACAGGCCTTGGCCAGTCTGTCAGCCCCAT  500

seq1  CCATAGGGACAGCATGCTTAGAAACAGGAGGGATCTTTGTGTTGCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGGACAGCATGCTTAGAAACAGGAGGGATCTTTGTGTTGCCAGAG  550

seq1  GAATGACTTGATGTGAGAATGACAGGGAGGCCTTTTCTGTAAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACTTGATGTGAGAATGACAGGGAGGCCTTTTCTGTAAAAAAAAAA  600

seq1  AAAGTCAATACAGCTTGGCTTCCTGCCAGGGACAAACATATCCTCTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAATACAGCTTGGCTTCCTGCCAGGGACAAACATATCCTCTTTTG  650

seq1  TTCTCCAGTGGTATAGACGTGAAAAGGTCTCCAGAAGCTGTGTGAATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGTGGTATAGACGTGAAAAGGTCTCCAGAAGCTGTGTGAATGGC  700

seq1  CGCTTCATCAACAGGCACTGAAGCCAAACATAATGGTTAAATATTCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCATCAACAGGCACTGAAGCCAAACATAATGGTTAAATATTCACAA  750

seq1  TCGATAAAACAAATCTGTAAACTTGATCTAGCTGGGAACAGAACAAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATAAAACAAATCTGTAAACTTGATCTAGCTGGGAACAGAACAAGCTC  800

seq1  CCAGGAAAGCACTAAGGAGCAGAGAAACAAGGATGCTAAACAGAAAC-TC  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCAGGAAAGCACTAAGGAGCAGAGAAACAAGGATGCTAAACAGAAACTTC  850

seq1  AGGGC-TTTCCTCTTTCCACTCTACCCAGGTGCA-TATTCCAGCAAACAA  897
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGGCTTTTCCTCTTTCCACTCTACCCAGGTGCATTATTCCAGCAAACAA  900

seq1  AGACTAGAATT--CCTTTCTTCTAATGAGCACTCAAAAATGATGAATTC-  944
      |||||||||||  | |||||||||||||||||||||||||||||||||| 
seq2  AGACTAGAATTTCCTTTTCTTCTAATGAGCACTCAAAAATGATGAATTCA  950

seq1  ATAATCCT-GTGTCTC-TCTTGGAAACAGAATGACCATGACT-AATTACC  991
      |||||||| ||||||| ||||||||||||||||||||||||| |||||||
seq2  ATAATCCTGGTGTCTCTTCTTGGAAACAGAATGACCATGACTAAATTACC  1000

seq1  C-TCAATATTTAAAAGAAAAAAAATCACTCTTTCCCTGTGAACATGCACT  1040
      | |||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  CTTCAATA-TTAAAAGGAAAAAAATCACTCTTTCCCTGTGAACATGCACT  1049

seq1  CCTTT-CTCCCCTATCTCCCACT  1062
      ||||| || ||||||||||||||
seq2  CCTTTCCTTCCCTATCTCCCACT  1072