BAC Information

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BAC

Clone NameB6Ng01-254N18
Chromosome6 (Build37)
Map Location 25,881,161 - 26,033,363
singlet/doubletdoublet
Overlap geneEG626912, LOC100041210
Upstream gene6332401O19Rik, LOC384358, Gpr37, Pot1a
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254N18.bB6Ng01-254N18.g
ACCGA061218GA061219
length1,058655
definitionB6Ng01-254N18.b B6Ng01-254N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,881,161 - 25,882,169)(26,032,711 - 26,033,363)
sequence
gaattccaggacagccagggctacgcagagaaatgcaggaagcgggtgtg
gctgcatgggccaagatggtgccctggcccattgccaagtcctgtaaacc
ccacatgtttaccgccttgcccgaacatgcgcagtaaaactgcatgtgta
agctgcctgccaagttagactactcatgatccagacctgtcagcctatct
gtgaccgacctgagttcgtgcctggagcatgagtgagtctgattggatga
ggtggtgtggagcgagatgaggtcagttgccatgaggaaaggtgtagagc
acttgctgcaagaaggacagggatagaagcagctggggagagagctgtaa
gagaaaaagccacaagtaaagaagctgctgcgtaaacctgccttggtgtc
catgttgttcttgtctccgcaggtggcaaggactgcgaaaagtgatggcc
catatggggaactcatcactttggtcggcaatggtaagtaaagaaagtac
aggcctttgaaaattttagtaaacagcggtaaggagattttggtaagcaa
cgccgtttaaagaacgcacaggcttgtaaggttcccgggataaaagggat
gaagcattaaggttctcaggaatagagacaaagggaatttcagtaacaag
tgttcaactgcgactaaaatgaaagtaaaaatgttagccatctggaactt
ggtcaggacgtgcttgagggacgccagtggaaagtacaatgctgaaatag
aggaaggagctgtggtgcttgaggaggctgaggagattgcttctcaggct
agctgcggaaaacctaaacagcttaacgacaaaccaaagataagaaagag
aagaaaggaatctagctctgaagggtctactagtgacagcgatgggactg
atagtgacagtgacgtctgtagtcagatgtcctgttggagtttgaggcat
ggtaggccacgcaaccatcagcccctccgttgcctctcatcccccctata
agatgagggagacaaatgggaaagcataggacttcatgcaaagtctggaa
aatgtgcc
gaattctaaggagctgagtcaaaagtgagtggggggtggggatcaccctc
ataatggccagggaggagggacaggatagggggtttatggaggggaaact
ggaaagggggataacatttgaaatgtaaataaataaaataaccaataaaa
tgaaaaaaagatgaatttccacttatagttaaaactttctattaaaaaaa
cattgatttagatgaaaatagctcaaaatagatcacagttaaatattatt
tttctttgctacctgatagagcaacttaagggagaaaagttttattttca
tccctgatgcacagtttaagaatattgtaccttctgaagctggtgatgca
gctactgatgatggacctcctggagagcttgactctgaaggccctgatgg
cccagaggggctgggattgatacctggagatatgtcaaagtcaccagatt
gggagtacaagcatggggagtggggcagtgagcaggcaggcatgaggcac
tgtatgggggtggcagcagtctggacgatggactggaagggatagatagt
gatggtcaggacatgtacatgcagaccaagggcggtgatgtgtacctggc
cccagaaaatggaatcacaagtggaggcagaccttgaatgaagaggcctg
tgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_25881161_25882169
seq2: B6Ng01-254N18.b_103_1106

seq1  CATGGGCCAAGATGGTGCCCTGGCCCATTGCCAAGTCCTGTAAACCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCCAAGATGGTGCCCTGGCCCATTGCCAAGTCCTGTAAACCCCAC  50

seq1  ATGTTTACCGCCTTGCCCGAACATGCGCAGTAAAACTGCATGTGTAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACCGCCTTGCCCGAACATGCGCAGTAAAACTGCATGTGTAAGCT  100

seq1  GCCTGCCAAGTTAGACTACTCATGATCCAGACCTGTCAGCCTATCTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAAGTTAGACTACTCATGATCCAGACCTGTCAGCCTATCTGTGA  150

seq1  CCGACCTGAGTTCGTGCCTGGAGCATGAGTGAGTCTGATTGGATGAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCTGAGTTCGTGCCTGGAGCATGAGTGAGTCTGATTGGATGAGGTG  200

seq1  GTGTGGAGCGAGATGAGGTCAGTTGCCATGAGGAAAGGTGTAGAGCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGCGAGATGAGGTCAGTTGCCATGAGGAAAGGTGTAGAGCACTT  250

seq1  GCTGCAAGAAGGACAGGGATAGAAGCAGCTGGGGAGAGAGCTGTAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAGAAGGACAGGGATAGAAGCAGCTGGGGAGAGAGCTGTAAGAGA  300

seq1  AAAAGCCACAAGTAAAGAAGCTGCTGCGTAAACCTGCCTTGGTGTCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCACAAGTAAAGAAGCTGCTGCGTAAACCTGCCTTGGTGTCCATG  350

seq1  TTGTTCTTGTCTCCGCAGGTGGCAAGGACTGCGAAAAGTGATGGCCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTGTCTCCGCAGGTGGCAAGGACTGCGAAAAGTGATGGCCCATA  400

seq1  TGGGGAACTCATCACTTTGGTCGGCAATGGTAAGTAAAGAAAGTACAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAACTCATCACTTTGGTCGGCAATGGTAAGTAAAGAAAGTACAGGC  450

seq1  CTTTGAAAATTTTAGTAAACAGCGGTAAGGAGATTTTGGTAAGCAACGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAATTTTAGTAAACAGCGGTAAGGAGATTTTGGTAAGCAACGCC  500

seq1  GTTTAAAGAACGCACAGGCTTGTAAGGTTCCCGGGATAAAAGGGATGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGAACGCACAGGCTTGTAAGGTTCCCGGGATAAAAGGGATGAAG  550

seq1  CATTAAGGTTCTCAGGAATAGAGACAAAGGGAATTTCAGTAACAAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGGTTCTCAGGAATAGAGACAAAGGGAATTTCAGTAACAAGTGTT  600

seq1  CAACTGCGACTAAAATGAAAGTAAAAATGTTAGCCATCTGGAACTTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCGACTAAAATGAAAGTAAAAATGTTAGCCATCTGGAACTTGGTC  650

seq1  AGGACGTGCTTGAGGGACGCCAGTGGAAAGTACAATGCTGAAATAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGTGCTTGAGGGACGCCAGTGGAAAGTACAATGCTGAAATAGAGGA  700

seq1  AGGAGCTGTGGTGCTTGAGGAGGCTGAGGAGATTGCTTCTCAGGCTAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGTGGTGCTTGAGGAGGCTGAGGAGATTGCTTCTCAGGCTAGCT  750

seq1  GCGGAAAACCTAAACAGCTTAAACGACAAACCAAAGATAAGAAAGAGAAG  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCGGAAAACCTAAACAGCTT-AACGACAAACCAAAGATAAGAAAGAGAAG  799

seq1  -AAGGAATCTAGCTCTGAAGGGTCTACTAGTGACAGCGATGGGACTGATA  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATCTAGCTCTGAAGGGTCTACTAGTGACAGCGATGGGACTGATA  849

seq1  GTGACAGTGACGTCTGTAGTCAGATGTCCTGTTGGAGTTTGAGGCATGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTGACGTCTGTAGTCAGATGTCCTGTTGGAGTTTGAGGCATGGT  899

seq1  AGGCCACGCAAACCATCAGCCCCTCCGTTGCCTTCTCATCCCCCCTATAA  949
      ||||||||| |||||||||||||||||||||| ||||||||||||||| |
seq2  AGGCCACGC-AACCATCAGCCCCTCCGTTGCC-TCTCATCCCCCCTAT-A  946

seq1  AGATGAGGGAGACAAAATGGGAAAGCATA-GACTTCATGCAAAAGTCTGG  998
      ||||||||||||| ||||||||||||||| |||||||||| |||||||||
seq2  AGATGAGGGAGAC-AAATGGGAAAGCATAGGACTTCATGC-AAAGTCTGG  994

seq1  AAAAATGTGCC  1009
       ||||||||||
seq2  -AAAATGTGCC  1004

seq1: chr6_26032711_26033363
seq2: B6Ng01-254N18.g_69_722 (reverse)

seq1  GTCACAGGCCTCTTCATTCATGCTCTGCCTCCACCTGTGA-TCCATTCTC  49
      |||||||||||||||||||| | ||||||||||| ||||| |||||| ||
seq2  GTCACAGGCCTCTTCATTCAAGGTCTGCCTCCACTTGTGATTCCATTTTC  50

seq1  TGGGGCCAGGTACCCATCACCGCCCTTGGTCTGCATGTACATGTCCTGAC  99
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCAGGTACACATCACCGCCCTTGGTCTGCATGTACATGTCCTGAC  100

seq1  CATCACTATCTATCCCTTCCAGTCCATCGTCCAGACTGCTGCCACCCCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTATCTATCCCTTCCAGTCCATCGTCCAGACTGCTGCCACCCCCA  150

seq1  TACAGTGCCTCATGCCTGCCTGCTCACTGCCCCACTCCCCATGCTTGTAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGCCTCATGCCTGCCTGCTCACTGCCCCACTCCCCATGCTTGTAC  200

seq1  TCCCAATCTGGTGACTTTGACATATCTCCAGGTCTCAATCCCAGCCCCTC  249
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCCAATCTGGTGACTTTGACATATCTCCAGGTATCAATCCCAGCCCCTC  250

seq1  TGGGCCATCAGGGCCTTCAGAGTCAAGCTCTCCAGGAGGTCCATCATCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCATCAGGGCCTTCAGAGTCAAGCTCTCCAGGAGGTCCATCATCAG  300

seq1  TAGCTGCATCACCAGCTTCAGAAGGTACAATATTCTTAAACTGTGCATCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCATCACCAGCTTCAGAAGGTACAATATTCTTAAACTGTGCATCA  350

seq1  GGGATGAAAATAAAACTTTTCTCCCTTAAGTTGCTCTATCAGGTAGCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAAAATAAAACTTTTCTCCCTTAAGTTGCTCTATCAGGTAGCAAA  400

seq1  GAAAAATAATATTTAACTGTGATCTATTTTGAGCTATTTTCATCTAAATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAATATTTAACTGTGATCTATTTTGAGCTATTTTCATCTAAATC  450

seq1  AATGTTTTTTTAATAGAAAGTTTTAACTATAAGTGGAAATTCATCTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTTTAATAGAAAGTTTTAACTATAAGTGGAAATTCATCTTTTT  500

seq1  TTCATTTTATTGGTTATTTTATTTATTTACATTTCAAATGTTATCCCCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTATTGGTTATTTTATTTATTTACATTTCAAATGTTATCCCCCT  550

seq1  TTCCAGTTTCCCCTCCATAAACCCCCTATCCTGTCCCTCCTCCCTGGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTTCCCCTCCATAAACCCCCTATCCTGTCCCTCCTCCCTGGCCA  600

seq1  TTATGAGGGTGATCCCCACCCCCCACTCACTTTTGACTCAGCTCCTTAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGGGTGATCCCCACCCCCCACTCACTTTTGACTCAGCTCCTTAGA  650

seq1  ATTC  653
      ||||
seq2  ATTC  654