BAC Information

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BAC

Clone NameB6Ng01-255L21
Chromosome6 (Build37)
Map Location 48,877,353 - 48,968,000
singlet/doubletdoublet
Overlap gene1600015I10Rik, LOC100040589, Doxl2, Svs1
Upstream geneZfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1
Downstream geneGpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255L21.bB6Ng01-255L21.g
ACCGA061876GA061877
length1,177316
definitionB6Ng01-255L21.b B6Ng01-255L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,966,811 - 48,968,000)(48,877,353 - 48,877,668)
sequence
gaattcctgatgaaatggtctaccctcagtcctcaggaaggtgcacactt
cagggtcatttcagagatccaatttgttcccttaattacccattgtcctt
acaggtgaggactggaataaataagcaatctgtgagaagaaagtggcatc
ttctcgtcccacactcacatcctctgtagaactcgggcgcactctttatc
cccaactgagggtcagcatgggtaggtagaggtggcttgtcagcccgtgt
ccatttagttttttatttgttgttgtttttgttttgcttttattctattc
caacaaggataagagcatcctttgaaatgagtgactcgtagggttccact
cttataaaacatggctgtttggcttaatgtttggatgtactaatttcaga
atcttctcagaatgtacccatctcagaatctttagattaaggactttcat
tttacatcaaacttgacgagtgaggcagccagtcccgtcatgacagcagc
tcagcaccttccagcaaaggacggcaggcaggaagcatctgcttccccga
cccctcactacgcagaatgaaagagctgcttcctggttacatctagggca
ctgtggataatggcggagacccaccagaatccacctggagttatgccaaa
cagctgagacgtgtccctgacgacagaatctttactttcctacagaaatg
attgctgacgggcactgtggcctgaagtctctgcctgtgtgtgtgttaga
ggagattgtatgacagaggcccgggaagccactgctgcagaccccagggc
aatcagctggacatgctggtgcacgtctgtagtcacagccctcgggagtc
tatggatggcacgtcagaggtcatcctgggctatacttcgtctcaagacc
ttgtctgaaatagatagacaaggggttttgtgagaaggatttgtggttag
aacacggacttctttagagacttgaagttcttatcacacagatctttcac
ttccttagttagagtcaccgccaggtatttatatatttgtgactattgag
acggtgttgtttccctaatttcttctcagctgtttatccttgtgtacaga
agccattgaccttgttgagtactttattcagctactttattgaagctggt
tatcaggcttaggagtctctctggttg
ctacatggaggcaggtgtgacgtcccactctaactctttctttgaagagt
atttccactggcaaatcaaccacactccagtggaaggtcacatatccatt
aataaatatatgggcagcacaaattgcacttgatggggaagagacagagg
actcaacgttgtgtgggtacaaagagtatatggatctaggggagctaggg
ataggagtggatatggtcaaaactcactgtagaaattctcaacaaacaaa
tacaaagaaaaaggttaagaggaaactaacaaggtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48966811_48968000
seq2: B6Ng01-255L21.b_47_1223 (reverse)

seq1  CCACCAGAGA-ACTCCTAAGCCTGATAAACAGCTTCAATAAAGTAGCTGG  49
      | |||||||| ||||||||||||||||| |||||||||||||||||||| 
seq2  CAACCAGAGAGACTCCTAAGCCTGATAACCAGCTTCAATAAAGTAGCTGA  50

seq1  ATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTGTACACAAAGGATA  99
      ||   ||| | ||||||  | |||||||||  |||||||||| |||||||
seq2  AT---AAAGT-ACTCAACAAGGTCAATGGC--TTCTGTACAC-AAGGATA  93

seq1  AACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACA  149
      |||| |||||| |||||||||||||||||||| || ||||||||||||||
seq2  AACA-GCTGAG-AAGAAATTAGGGAAACAACA-CCGTCTCAATAGTCACA  140

seq1  AATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCT  199
      ||| |||| |||||||| |  |||||||||||||||||||||||||||||
seq2  AAT-ATAT-AAATACCTGGCGGTGACTCTAACTAAGGAAGTGAAAGATCT  188

seq1  GTGTGATAAGAACTTCAAGTCTCTAAAGAAGTCCGTGTTCTTAACCACAA  249
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGTGATAAGAACTTCAAGTCTCTAAAGAAGTCCGTGTTC-TAACCACAA  237

seq1  ATCCTTCTCACAAAACCCCTTGTCTATTCTATTTCAGACAAGGTCTTGAG  299
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCCTTCTCACAAAACCCCTTGTCTA-TCTATTTCAGACAAGGTCTTGAG  286

seq1  ACGAAGTATAGCCCAGGATGACCTCTGACGTGCCATCCATAGACTCCCGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGTATAGCCCAGGATGACCTCTGACGTGCCATCCATAGACTCCCGA  336

seq1  GGGCTGTGACTACAGACGTGCACCAGCATGTCCAGCTGATTGCCCTGGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGACTACAGACGTGCACCAGCATGTCCAGCTGATTGCCCTGGGG  386

seq1  TCTGCAGCAGTGGCTTCCCGGGCCTCTGTCATACAATCTCCTCTAACACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCAGTGGCTTCCCGGGCCTCTGTCATACAATCTCCTCTAACACA  436

seq1  CACACAGGCAGAGACTTCAGGCCACAGTGCCCGTCAGCAATCATTTCTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGCAGAGACTTCAGGCCACAGTGCCCGTCAGCAATCATTTCTGT  486

seq1  AGGAAAGTAAAGATTCTGTCGTCAGGGACACGTCTCAGCTGTTTGGCATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTAAAGATTCTGTCGTCAGGGACACGTCTCAGCTGTTTGGCATA  536

seq1  ACTCCAGGTGGATTCTGGTGGGTCTCCGCCATTATCCACAGTGCCCTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGTGGATTCTGGTGGGTCTCCGCCATTATCCACAGTGCCCTAGA  586

seq1  TGTAACCAGGAAGCAGCTCTTTCATTCTGCGTAGTGAGGGGTCGGGGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCAGGAAGCAGCTCTTTCATTCTGCGTAGTGAGGGGTCGGGGAAG  636

seq1  CAGATGCTTCCTGCCTGCCGTCCTTTGCTGGAAGGTGCTGAGCTGCTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTTCCTGCCTGCCGTCCTTTGCTGGAAGGTGCTGAGCTGCTGTC  686

seq1  ATGACGGGACTGGCTGCCTCACTCGTCAAGTTTGATGTAAAATGAAAGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGGGACTGGCTGCCTCACTCGTCAAGTTTGATGTAAAATGAAAGTC  736

seq1  CTTAATCTAAAGATTCTGAGATGGGTACATTCTGAGAAGATTCTGAAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTAAAGATTCTGAGATGGGTACATTCTGAGAAGATTCTGAAATT  786

seq1  AGTACATCCAAACATTAAGCCAAACAGCCATGTTTTATAAGAGTGGAACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATCCAAACATTAAGCCAAACAGCCATGTTTTATAAGAGTGGAACC  836

seq1  CTACGAGTCACTCATTTCAAAGGATGCTCTTATCCTTGTTGGAATAGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGAGTCACTCATTTCAAAGGATGCTCTTATCCTTGTTGGAATAGAAT  886

seq1  AAAAGCAAAACAAAAACAACAACAAATAAAAAACTAAATGGACACGGGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAACAAAAACAACAACAAATAAAAAACTAAATGGACACGGGCT  936

seq1  GACAAGCCACCTCTACCTACCCATGCTGACCCTCAGTTGGGGATAAAGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCCACCTCTACCTACCCATGCTGACCCTCAGTTGGGGATAAAGAG  986

seq1  TGCGCCCGAGTTCTACAGAGGATGTGAGTGTGGGACGAGAAGATGCCACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCCGAGTTCTACAGAGGATGTGAGTGTGGGACGAGAAGATGCCACT  1036

seq1  TTCTTCTCACAGATTGCTTATTTATTCCAGTCCTCACCTGTAAGGACAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCACAGATTGCTTATTTATTCCAGTCCTCACCTGTAAGGACAAT  1086

seq1  GGGTAATTAAGGGAACAAATTGGATCTCTGAAATGACCCTGAAGTGTGCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATTAAGGGAACAAATTGGATCTCTGAAATGACCCTGAAGTGTGCA  1136

seq1  CCTTCCTGAGGACTGAGGGTAGACCATTTCATCAGGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGAGGACTGAGGGTAGACCATTTCATCAGGAATTC  1177

seq1: chr6_48877353_48877668
seq2: B6Ng01-255L21.g_72_387

seq1  CTACATGGAGGCAGGTGTGACGTCCCACTCTAACTCTTTCTTTGAAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGAGGCAGGTGTGACGTCCCACTCTAACTCTTTCTTTGAAGAGT  50

seq1  ATTTCCACTGGCAAATCAACCACACTCCAGTGGAAGGTCACATATCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACTGGCAAATCAACCACACTCCAGTGGAAGGTCACATATCCATT  100

seq1  AATAAATATATGGGCAGCACAAATTGCACTTGATGGGGAAGAGACAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATATGGGCAGCACAAATTGCACTTGATGGGGAAGAGACAGAGG  150

seq1  ACTCAACGTTGTGTGGGTACAAAGAGTATATGGATCTAGGGGAGCTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACGTTGTGTGGGTACAAAGAGTATATGGATCTAGGGGAGCTAGGG  200

seq1  ATAGGAGTGGATATGGTCAAAACTCACTGTAGAAATTCTCAACAAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGTGGATATGGTCAAAACTCACTGTAGAAATTCTCAACAAACAAA  250

seq1  TACAAAGAAAAAGGTTAAGAGGAAACTAACAAGGTGTGTGTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAAAAAGGTTAAGAGGAAACTAACAAGGTGTGTGTGTGTGTGTG  300

seq1  TGTGTGTGTGTGTGTG  316
      ||||||||||||||||
seq2  TGTGTGTGTGTGTGTG  316