BAC Information

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BAC

Clone NameB6Ng01-257H21
Chromosome6 (Build37)
Map Location 99,097,134 - 99,229,348
singlet/doubletdoublet
Overlap geneFoxp1
Upstream geneGm765, LOC666019, LOC665963, LOC665979
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257H21.bB6Ng01-257H21.g
ACCGA063177GA063178
length1,1421,175
definitionB6Ng01-257H21.b B6Ng01-257H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,228,204 - 99,229,348)(99,097,134 - 99,098,315)
sequence
gaattctttagagctattcattctggtctgtgaagcatcttctataaact
aggcatgccggatatgaggagacacaccactgatgatgtgaattggaatc
attcccgcacacatgaacacggaagtattgaacagccaaagggacactga
cttaacaccttgctatggagggcttctgggagggaggggcatttacaaca
gggttacatggggcaggcagacttatctagtcaaaggaggcacagcctgt
gatgatagactggacctatgtggagcctggagatgtgagcttgcagggtg
tacatgagtatctactggtgatggaatgaaacttaagagagtcacaaaga
ggctctgctaataggactatcttccaagtgcctcgggacatttcagctat
cttctttcatttaggaaactatgaactatttaagccaatatggtacatgt
attcaacattgtgcattataatgttgtaggccagagaggtggtggctcaa
tggttaagggtacttactgttcttgcagaagacccaggttcattttccag
cacccacaagtcagctaaaaactttcttgtgcttctctgagcatcaggca
tgcacatagtacacctacttatatgcaggcaaaatgaacataaaaataag
taagcttgaatgggctgtaagagtgaaggtacttgggactcattagtact
ttttaaaaagtgctctaatttttttttaaagtatggggtattctaagatt
gattatgtaggatactttagagaagctatttcaggatggcatgagttttg
aggtttttggtttacaggatttggttgtgtttcagatgagtgttttaggg
ccaatgacataacagtagggaagtaagggcaggtgtctcggtgaagcctg
tggtaggcctgtgagtctcagatggaatggaggaagaaattactctcgat
gcctggcagccacaatgtctgcgcatccacagtggaccatggtgtgggac
tgctgttcctgatcaagagagcacacaaaccgtagaccaccaagccccat
gacctgaagccatccaccatttcacctgtacgggccgatgatgaagacca
agtgttggtgggcacttagttcctgatgacgagggtgcccta

gaattcaatagtttactgattacatgtggatataagatgagtggggcagg
ctaaagaatggaacactctagagaaacaacccagtccataccagaccagt
atgttgggatccatactatcttgaccatggctttggtccatccttaaagg
atgggggacaaggagggtgatccagtactgagcacggtttaaagcagtga
ctgtttggccaagggcaatgtgctacttacacattcactacaccacctct
ttcagaaaggtgaatttgtgctgctccattttacaggtaagaaaatggag
acacagaatgctggtcacacgggacaacttttctcttttcttttcttttc
ttttcttttcttttcttttcttttcttttctttctttctttctttctttc
tttctttctttctttctttttttgttttttgttgctgttttggttttcca
agaaaaggtttctctttgtagccctggctgtcctggaactcactctgtag
accaggctggcctcaaactcagaaatctgcctgcctctgcctcccaagtg
ctgggattaaaggtgtgtgccaccactgcctggctgggacagcttttctc
atgcacgaactgtgaaaggtggggttccaccctcctggcagggaattcca
gtcaaatggtccccctacctctacaactcccaaagggaagtagcctcaga
aaggacagaagaagtgaccgagaagcgtgtacctatgtgtgcctgtggct
atgggaagggggtgtccacagggcctgggaggctcgagggatggaggaga
atggagaaaagcaaaacagaagagtgaggcctgctttctttcccactttc
tctgggcactggcagagttttgacttttgtcacagaagagtaaaggttca
gtaaggatgatttgccttggtcacaggtcatggtgggaacatccagaaaa
ctgggtggatctggagagcgcatccagaccagtggtgactgaagaaataa
atgtgaaaggaattcttaattattttattgtctaagaaaaactgtgacca
tgcactgcacaggatcagatcataatatgtatttccatatgtattcattg
gcatccttgcaggtcttaatctgaagcaacgttctgctttttgctttttt
tttagtgaggctcaattgttgctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99228204_99229348
seq2: B6Ng01-257H21.b_43_1184 (reverse)

seq1  TAGGGCACCTCTGTCATCAGGGACCTAGTGCCCACC-ACACTGTGGTCTT  49
      |||||||||   ||||||||| ||  |||||||||| ||||| |||||||
seq2  TAGGGCACCCTCGTCATCAGGAACTAAGTGCCCACCAACACT-TGGTCTT  49

seq1  TCAATCAACCGGCCCGTACA-GTGGAATGGT-GATGGGCCTTCAGGTCAT  97
         ||| | ||||||||||| ||| |||||| |||||  |||||||||||
seq2  --CATC-ATCGGCCCGTACAGGTGAAATGGTGGATGG--CTTCAGGTCAT  94

seq1  GGGGCTTGGTGGTCTACGGTTTGTGTGCTCTTCTTGATCAGGAACAGCAG  147
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGGGCTTGGTGGTCTACGGTTTGTGTGCTC-TCTTGATCAGGAACAGCAG  143

seq1  TCCCACACCATGGTCCACTGTGGATGCGCAGACATTGTGGCTGCCAGGCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACCATGGTCCACTGTGGATGCGCAGACATTGTGGCTGCCAGGCA  193

seq1  TCGAGAGTAATTTCTT-CTCCATTCCATCTGAGACTCACAGGCCTACCAC  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCGAGAGTAATTTCTTCCTCCATTCCATCTGAGACTCACAGGCCTACCAC  243

seq1  AGGCTTCACCGAGACACCTGCCCTTACTTCCCTACTGTTATGTCATTGGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCACCGAGACACCTGCCCTTACTTCCCTACTGTTATGTCATTGGC  293

seq1  CCTAAAACACTCATCTGAAACACAACCAAATCCTGTAAACCAAAAACCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACACTCATCTGAAACACAACCAAATCCTGTAAACCAAAAACCTC  343

seq1  AAAACTCATGCCATCCTGAAATAGCTTCTCTAAAGTATCCTACATAATCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCATGCCATCCTGAAATAGCTTCTCTAAAGTATCCTACATAATCA  393

seq1  ATCTTAGAATACCCCATACTTTAAAAAAAAATTAGAGCACTTTTTAAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGAATACCCCATACTTTAAAAAAAAATTAGAGCACTTTTTAAAAA  443

seq1  GTACTAATGAGTCCCAAGTACCTTCACTCTTACAGCCCATTCAAGCTTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAATGAGTCCCAAGTACCTTCACTCTTACAGCCCATTCAAGCTTAC  493

seq1  TTATTTTTATGTTCATTTTGCCTGCATATAAGTAGGTGTACTATGTGCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATGTTCATTTTGCCTGCATATAAGTAGGTGTACTATGTGCAT  543

seq1  GCCTGATGCTCAGAGAAGCACAAGAAAGTTTTTAGCTGACTTGTGGGTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATGCTCAGAGAAGCACAAGAAAGTTTTTAGCTGACTTGTGGGTGC  593

seq1  TGGAAAATGAACCTGGGTCTTCTGCAAGAACAGTAAGTACCCTTAACCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATGAACCTGGGTCTTCTGCAAGAACAGTAAGTACCCTTAACCAT  643

seq1  TGAGCCACCACCTCTCTGGCCTACAACATTATAATGCACAATGTTGAATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCACCTCTCTGGCCTACAACATTATAATGCACAATGTTGAATA  693

seq1  CATGTACCATATTGGCTTAAATAGTTCATAGTTTCCTAAATGAAAGAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACCATATTGGCTTAAATAGTTCATAGTTTCCTAAATGAAAGAAGA  743

seq1  TAGCTGAAATGTCCCGAGGCACTTGGAAGATAGTCCTATTAGCAGAGCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAAATGTCCCGAGGCACTTGGAAGATAGTCCTATTAGCAGAGCCT  793

seq1  CTTTGTGACTCTCTTAAGTTTCATTCCATCACCAGTAGATACTCATGTAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGACTCTCTTAAGTTTCATTCCATCACCAGTAGATACTCATGTAC  843

seq1  ACCCTGCAAGCTCACATCTCCAGGCTCCACATAGGTCCAGTCTATCATCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCAAGCTCACATCTCCAGGCTCCACATAGGTCCAGTCTATCATCA  893

seq1  CAGGCTGTGCCTCCTTTGACTAGATAAGTCTGCCTGCCCCATGTAACCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTGCCTCCTTTGACTAGATAAGTCTGCCTGCCCCATGTAACCCT  943

seq1  GTTGTAAATGCCCCTCCCTCCCAGAAGCCCTCCATAGCAAGGTGTTAAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAATGCCCCTCCCTCCCAGAAGCCCTCCATAGCAAGGTGTTAAGT  993

seq1  CAGTGTCCCTTTGGCTGTTCAATACTTCCGTGTTCATGTGTGCGGGAATG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCCTTTGGCTGTTCAATACTTCCGTGTTCATGTGTGCGGGAATG  1043

seq1  ATTCCAATTCACATCATCAGTGGTGTGTCTCCTCATATCCGGCATGCCTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATTCACATCATCAGTGGTGTGTCTCCTCATATCCGGCATGCCTA  1093

seq1  GTTTATAGAAGATGCTTCACAGACCAGAATGAATAGCTCTAAAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAGAAGATGCTTCACAGACCAGAATGAATAGCTCTAAAGAATTC  1142


seq1: chr6_99097134_99098315
seq2: B6Ng01-257H21.g_67_1241

seq1  GAATTCAATAGTTTACTGATTACATGTGGATATAAGATGAGTGGGGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGTTTACTGATTACATGTGGATATAAGATGAGTGGGGCAGG  50

seq1  CTAAAGAATGGAACACTCTAGAGAAACAACCCAGTCCATACCAGACCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAATGGAACACTCTAGAGAAACAACCCAGTCCATACCAGACCAGT  100

seq1  ATGTTGGGATCCATACTATCTTGACCATGGCTTTGGTCCATCCTTAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGGATCCATACTATCTTGACCATGGCTTTGGTCCATCCTTAAAGG  150

seq1  ATGGGGGACAAGGAGGGTGATCCAGTACTGAGCACGGTTTAAAGCAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGACAAGGAGGGTGATCCAGTACTGAGCACGGTTTAAAGCAGTGA  200

seq1  CTGTTTGGCCAAGGGCAATGTGCTACTTACACATTCACTACACCACCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGCCAAGGGCAATGTGCTACTTACACATTCACTACACCACCTCT  250

seq1  TTCAGAAAGGTGAATTTGTGCTGCTCCATTTTACAGGTAAGAAAATGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGGTGAATTTGTGCTGCTCCATTTTACAGGTAAGAAAATGGAG  300

seq1  ACACAGAATGCTGGTCACACGGGACAACTTTTCTCTTTTCTTTTCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAATGCTGGTCACACGGGACAACTTTTCTCTTTTCTTTTCTTTTC  350

seq1  TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTTCTTTCTTTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTTCTTTCTTTCTTTC  400

seq1  TTTCTTTCTTTCTTTCTTTTTTTGTTTTTTGTTGCTGTTTTGGTTTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTTTTTGTTTTTTGTTGCTGTTTTGGTTTTCCA  450

seq1  AGAAAAGGTTTCTCTTTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGTTTCTCTTTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  500

seq1  ACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTG  550

seq1  CTGGGATTAAAGGTGTGTGCCACCACTGCCTGGCTGGGACAGCTTTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGTGTGTGCCACCACTGCCTGGCTGGGACAGCTTTTCTC  600

seq1  ATGCACGAACTGTGAAAGGTGGGGTTCCACCCTCCTGGCAGGGAATTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACGAACTGTGAAAGGTGGGGTTCCACCCTCCTGGCAGGGAATTCCA  650

seq1  GTCAAATGGTCCCCCTACCTCTACAACTCCCAAAGGGAAGTAGCCTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATGGTCCCCCTACCTCTACAACTCCCAAAGGGAAGTAGCCTCAGA  700

seq1  AAGGACAGAAGAAGTGACCGAGAAGCGTGTACCTATGTGTGCCTGTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGAAGAAGTGACCGAGAAGCGTGTACCTATGTGTGCCTGTGGCT  750

seq1  ATGGGAAGGGGGTGTCCACAGGGCCTGGGAGGCTCGAGGGATGGAGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGGGGGTGTCCACAGGGCCTGGGAGGCTCGAGGGATGGAGGAGA  800

seq1  ATGGAGAAAAGCAAAACAGAAGAGTGAGGCCTGCTTTCTTTCCCAC-TTC  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGGAGAAAAGCAAAACAGAAGAGTGAGGCCTGCTTTCTTTCCCACTTTC  850

seq1  TCTGGGCACTGGCAGAGTTTTGACTTTTGTCACAGAAGAGT-AAGGTTCA  898
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTGGGCACTGGCAGAGTTTTGACTTTTGTCACAGAAGAGTAAAGGTTCA  900

seq1  GTAAGGATGATTTGCCTTGGTCACAGGTCATGGTGGGAACATCCAGAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGATGATTTGCCTTGGTCACAGGTCATGGTGGGAACATCCAGAAAA  950

seq1  CT-GGTGGATCTGGAGAGCGCATCCAGACAAGTGGTGACTGAAGAAATAA  997
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGGGTGGATCTGGAGAGCGCATCCAGACCAGTGGTGACTGAAGAAATAA  1000

seq1  ATGTGAAAGGAATTCTTAAAATTATTTTATTGTCTAAGAAAAAACTGTGA  1047
      |||||||||||||||||  ||||||||||||||||||| |||||||||||
seq2  ATGTGAAAGGAATTCTT--AATTATTTTATTGTCTAAG-AAAAACTGTGA  1047

seq1  CCAAGGCACTGCACAGGATCAAGATCATTATATGTATTT-CATATGTATT  1096
      || | ||||||||||||||| ||||||| |||||||||| |||||||| |
seq2  CC-ATGCACTGCACAGGATC-AGATCATAATATGTATTTCCATATGTA-T  1094

seq1  TCATTTGCATCC-TGCAGGGTCTT-ATCTTAAAAGC-ACCTTCTGGTTTT  1143
      ||||| |||||| |||| |||||| ||||   |||| || ||||| ||  
seq2  TCATTGGCATCCTTGCA-GGTCTTAATCT--GAAGCAACGTTCTGCTT--  1139

seq1  TTGTTTTTTTTTTTTTTAGTAGAGACCCAA-TGTTGCTAT  1182
         |||  |||||||||||| ||| | ||| |||||||||
seq2  ---TTTGCTTTTTTTTTAGT-GAGGCTCAATTGTTGCTAT  1175


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