BAC Information

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BAC

Clone NameB6Ng01-258E04
Chromosome6 (Build37)
Map Location 110,823,593 - 110,956,520
singlet/doubletdoublet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258E04.bB6Ng01-258E04.g
ACCGA063745GA063746
length1,1971,174
definitionB6Ng01-258E04.b B6Ng01-258E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,955,307 - 110,956,520)(110,823,593 - 110,824,778)
sequence
gaattctttgtttagctttgtactccccccctttttttttgatgccaatg
gggatttattgagtaaatgcaaacaataaacccactaacaacactaacat
acaggcatggaaaacattcgtagcttgtaaagaaaatgaaacactgcaaa
cggtttccaaagggggaaatgatccctcttgtctgacaagaaattttcat
agcaacatgcaaaacagcaaaattcatggctgtagtctagataaggagat
cttatgctgataccaaggactgcatagtgcatagaaacattattagaagg
tttcatgctgcagaaaagtcatcatgcagatgtcagaactcaccctgcat
ttatttaagcctttctacatggacacctcatccttgcaaggtctagttgt
tgctcccagcatgacagaaacagtggggttataattttcctgaattcctg
gctatccttgtctatacaatggaatcctgttgcaaatgacaaaacaaaac
aaaccaaacaaacaaacaaacaaatccccccaaaatcaaaaatacaaaac
aaaacaaaacagaaaacaaccatccaaacaaatatttaatcaaaatacct
aaaagtctaagcagtgatttgaacaatggtatcaaggaatgtgtgtttgg
tgtgtttgaaaaatatcactacctcatcagatatggcaatgactgacaat
tatgaaactgtagaacatgaaataggatccagtgaaattacatttatagt
aagtcttcccagatttgaaaaatggttttttaatagggttatttggttcc
ctggtgtctaacttgttgcgttctttgtatatattagatattagccctct
atcagatgtacgagtggtaaagatcttttccaatctgttggtgacagtga
ccttcaattttatgaggtccatttgtctattgttgatcttagagcattaa
gccattggtactctgttcaggaaaatttcctctaaatctcaggtgacagc
agatgctggcgaggatgtgagagagatactctccattgttggggaatcag
ctgggtacatctggccagaagaacgacgctgcaacaggattctctgcaca
atgtttatcagtctgttcttctgattatatatctccatgattaattctct
gataatctctccctaaaccatggacctctcaactcttttataactct

gaattccaccctaggaccctcatgtaggagaaaactgactcctactagtt
gtcctttgacatcacacacacattcatgtacagaataaaaacacagtaat
tttgaattgctaagaaggaagttagtattcatttaataaatctcaatgaa
gagagagctaacatgtttatattccatataaacctctgacaagctgggca
gtggtggtgcccacctttaaatccagcacttggaaggcagatgcaggcag
atttctgagttcgaggctagcctggtctactgagtgagttccaggacagc
cagagctacacagagaaaccctgtcttgaaaaaataaaaataaaataaaa
taaacctctgacaaatggaaactgaatagatttttttttttcacccagga
acaaattgtttgtgttctgtgagaattcatgttttgggatactctcttca
acatgacatctgataactggaataaaggataagaaaggggacaatatttg
ttttaacttttctatggaatattagtgagtgacagaaaggtggggagaga
gcacagcaacttgagtatttactgaaaaggaaacaagagcctgtatgggt
cagccactctccagttagcatccatgagagtgagccggagtcatactcga
ctgactctttgataagtagaaatggtatttgggttgtgattggaaccagg
tagactttaacaggaactgttgcttcagtgtgttccccatgccctggagt
cttccatatcctatattttagagccaaaactacatgtttaagaattctac
tagaaactgactgactcccaaggggatgtatttgggtggctgtagacaat
attggagtctgagaatatgtacagaaaggattttcataaattataaacgt
tagtcattttgtatttgactctaatgaagtgcatcttgaattattttttg
ttgctatacaaaattcctgagactaaatagtatgtaaaaaagaagcttgt
ttgtctctgggaaatgtattcataaagaatggcatgagtttgcatatatg
gagggccatatggtggtatggccacaataagagaatgcagtgagcaagga
attaaagttttataatagttcgcttcctagggggtaacatcaatgaacat
ttatttagccagaataactcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110955307_110956520
seq2: B6Ng01-258E04.b_44_1240 (reverse)

seq1  AGAG-TATAAAAGAG-TGAGAGGTCCA-GGGTTAGGGAGAGATATAAACA  47
      |||| |||||||||| ||||||||||| || ||||||||||  || | ||
seq2  AGAGTTATAAAAGAGTTGAGAGGTCCATGGTTTAGGGAGAG--ATTATCA  48

seq1  AGGAGATATAAACAAGGGAGATATA-AACAAGAAGAAACAGGACTGAATA  96
        |||| || ||  | ||||||||| ||  ||||| |||| ||||| |||
seq2  --GAGA-ATTAATCATGGAGATATATAATCAGAAG-AACA-GACTG-ATA  92

seq1  AACA-TGTGCAGAAGGATCCTGTTGCAGCGTCGTTCTTCCTGGCCAGATT  145
      |||| ||||||| || |||||||||||||||||||||| ||||||||| |
seq2  AACATTGTGCAG-AGAATCCTGTTGCAGCGTCGTTCTT-CTGGCCAGA-T  139

seq1  GTA-CCAGCTTGGAATTCCCCCAACAATGGAGGAGTATTCCTTCTTCTC-  193
      ||| ||||||  ||  | ||||||||||||| ||||||       |||| 
seq2  GTACCCAGCT--GA--TTCCCCAACAATGGA-GAGTAT------CTCTCT  178

seq1  CACATCCTCGCCAGCATCTGCTGTCACCTGAGATTTAAGAGGAAATTTTC  243
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACATCCTCGCCAGCATCTGCTGTCACCTGAGATTT-AGAGGAAATTTTC  227

seq1  CTGAACAGAGTACCAATGGCTT-ATGCTCTAAGATCAACAATAGACAAAT  292
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGAACAGAGTACCAATGGCTTAATGCTCTAAGATCAACAATAGACAAAT  277

seq1  GGGACCTCATAAAATTGAAGGTCACTGTCACCAACAGATTGGGAAAAGAT  342
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  -GGACCTCATAAAATTGAAGGTCACTGTCACCAACAGATT-GGAAAAGAT  325

seq1  CTTTACCACTCGTACATCTGATAGAGGGCTAATATCTAATATATACAAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCACTCGTACATCTGATAGAGGGCTAATATCTAATATATACAAAG  375

seq1  AACGCAACAAGTTAGACACCAGGGAACCAAATAACCCTATTAAAAAACCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAACAAGTTAGACACCAGGGAACCAAATAACCCTATTAAAAAACCA  425

seq1  TTTTTCAAATCTGGGAAGACTTACTATAAATGTAATTTCACTGGATCCTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAATCTGGGAAGACTTACTATAAATGTAATTTCACTGGATCCTA  475

seq1  TTTCATGTTCTACAGTTTCATAATTGTCAGTCATTGCCATATCTGATGAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTCTACAGTTTCATAATTGTCAGTCATTGCCATATCTGATGAG  525

seq1  GTAGTGATATTTTTCAAACACACCAAACACACATTCCTTGATACCATTGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATATTTTTCAAACACACCAAACACACATTCCTTGATACCATTGT  575

seq1  TCAAATCACTGCTTAGACTTTTAGGTATTTTGATTAAATATTTGTTTGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCACTGCTTAGACTTTTAGGTATTTTGATTAAATATTTGTTTGGA  625

seq1  TGGTTGTTTTCTGTTTTGTTTTGTTTTGTATTTTTGATTTTGGGGGGATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTTTTCTGTTTTGTTTTGTTTTGTATTTTTGATTTTGGGGGGATT  675

seq1  TGTTTGTTTGTTTGTTTGGTTTGTTTTGTTTTGTCATTTGCAACAGGATT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGGTTTGTTTTGTTTTGTCATTTGCAACAGGATT  725

seq1  CCATTGTATAGACAAGGATAGCCAGGAATTCAGGAAAATTATAACCCCAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTATAGACAAGGATAGCCAGGAATTCAGGAAAATTATAACCCCAC  775

seq1  TGTTTCTGTCATGCTGGGAGCAACAACTAGACCTTGCAAGGATGAGGTGT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTCATGCTGGGAGCAACAACTAGACCTTGCAAGGATGAGGTGT  825

seq1  CCATGTAGAAAGGCTTAAATAAATGCAGGGTGAGTTCTGACATCTGCATG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAGAAAGGCTTAAATAAATGCAGGGTGAGTTCTGACATCTGCATG  875

seq1  ATGACTTTTCTGCAGCATGAAACCTTCTAATAATGTTTCTATGCACTATG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTTCTGCAGCATGAAACCTTCTAATAATGTTTCTATGCACTATG  925

seq1  CAGTCCTTGGTATCAGCATAAGATCTCCTTATCTAGACTACAGCCATGAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTGGTATCAGCATAAGATCTCCTTATCTAGACTACAGCCATGAA  975

seq1  TTTTGCTGTTTTGCATGTTGCTATGAAAATTTCTTGTCAGACAAGAGGGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTTTTGCATGTTGCTATGAAAATTTCTTGTCAGACAAGAGGGA  1025

seq1  TCATTTCCCCCTTTGGAAACCGTTTGCAGTGTTTCATTTTCTTTACAAGC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCCCCTTTGGAAACCGTTTGCAGTGTTTCATTTTCTTTACAAGC  1075

seq1  TACGAATGTTTTCCATGCCTGTATGTTAGTGTTGTTAGTGGGTTTATTGT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAATGTTTTCCATGCCTGTATGTTAGTGTTGTTAGTGGGTTTATTGT  1125

seq1  TTGCATTTACTCAATAAATCCCCATTGGCATCAAAAAAAAAGGGGGGGAG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTACTCAATAAATCCCCATTGGCATCAAAAAAAAAGGGGGGGAG  1175

seq1  TACAAAGCTAAACAAAGAATTC  1214
      ||||||||||||||||||||||
seq2  TACAAAGCTAAACAAAGAATTC  1197


seq1: chr6_110823593_110824778
seq2: B6Ng01-258E04.g_65_1238

seq1  GAATTCCACCCTAGGACCCTCATGTAGGAGAAAACTGACTCCTACTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCTAGGACCCTCATGTAGGAGAAAACTGACTCCTACTAGTT  50

seq1  GTCCTTTGACATCACACACACATTCATGTACAGAATAAAAACACAGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGACATCACACACACATTCATGTACAGAATAAAAACACAGTAAT  100

seq1  TTTGAATTGCTAAGAAGGAAGTTAGTATTCATTTAATAAATCTCAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTGCTAAGAAGGAAGTTAGTATTCATTTAATAAATCTCAATGAA  150

seq1  GAGAGAGCTAACATGTTTATATTCCATATAAACCTCTGACAAGCTGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCTAACATGTTTATATTCCATATAAACCTCTGACAAGCTGGGCA  200

seq1  GTGGTGGTGCCCACCTTTAAATCCAGCACTTGGAAGGCAGATGCAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGCCCACCTTTAAATCCAGCACTTGGAAGGCAGATGCAGGCAG  250

seq1  ATTTCTGAGTTCGAGGCTAGCCTGGTCTACTGAGTGAGTTCCAGGACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTCGAGGCTAGCCTGGTCTACTGAGTGAGTTCCAGGACAGC  300

seq1  CAGAGCTACACAGAGAAACCCTGTCTTGAAAAAATAAAAATAAAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTACACAGAGAAACCCTGTCTTGAAAAAATAAAAATAAAATAAAA  350

seq1  TAAACCTCTGACAAATGGAAACTGAATAGATTTTTTTTTTTCACCCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTCTGACAAATGGAAACTGAATAGATTTTTTTTTTTCACCCAGGA  400

seq1  ACAAATTGTTTGTGTTCTGTGAGAATTCATGTTTTGGGATACTCTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGTTTGTGTTCTGTGAGAATTCATGTTTTGGGATACTCTCTTCA  450

seq1  ACATGACATCTGATAACTGGAATAAAGGATAAGAAAGGGGACAATATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACATCTGATAACTGGAATAAAGGATAAGAAAGGGGACAATATTTG  500

seq1  TTTTAACTTTTCTATGGAATATTAGTGAGTGACAGAAAGGTGGGGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTTTTCTATGGAATATTAGTGAGTGACAGAAAGGTGGGGAGAGA  550

seq1  GCACAGCAACTTGAGTATTTACTGAAAAGGAAACAAGAGCCTGTATGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAACTTGAGTATTTACTGAAAAGGAAACAAGAGCCTGTATGGGT  600

seq1  CAGCCACTCTCCAGTTAGCATCCATGAGAGTGAGCCGGAGTCATACTCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTCTCCAGTTAGCATCCATGAGAGTGAGCCGGAGTCATACTCGA  650

seq1  CTGACTCTTTGATAAGTAGAAATGGTATTTGGGTTGTGATTGGAACCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTTTGATAAGTAGAAATGGTATTTGGGTTGTGATTGGAACCAGG  700

seq1  TAGACTTTAACAGGAACTGTTGCTTCAGTGTGTTCCCCATGCCCTGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTAACAGGAACTGTTGCTTCAGTGTGTTCCCCATGCCCTGGAGT  750

seq1  CTTCCATATCCTATATTTTAGAGCCAAAACTACATGTTTAAGAATTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATATCCTATATTTTAGAGCCAAAACTACATGTTTAAGAATTCTAC  800

seq1  TAGAAACTGACTGACTCCCAAGGGGATGTATTTGGGTGGCTGTAGACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTGACTGACTCCCAAGGGGATGTATTTGGGTGGCTGTAGACAAT  850

seq1  ATTGGAGTCTGAGAATATGTACAGAAAGGATTTTCATAAATTATAAACGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGTCTGAGAATATGTACAGAAAGGATTTTCATAAATTATAAACGT  900

seq1  TAGTCATTTTGTATTTGACTCTAATGAAGTGCATCTTGAATTATTTTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTTTGTATTTGACTCTAATGAAGTGCATCTTGAATTATTTTTTG  950

seq1  TTGCTATAACAAAATTCCTGAGACTAAATAGTATGTAAAAAAGAAGCTTG  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAT-ACAAAATTCCTGAGACTAAATAGTATGTAAAAAAGAAGCTTG  999

seq1  TTTGTCTCTTGGGAAATGTATTCCATAAAG-ATGGCATGAGTTTGCATAT  1049
      |||||||| ||||||||||||| ||||||| |||||||||||||||||||
seq2  TTTGTCTC-TGGGAAATGTATT-CATAAAGAATGGCATGAGTTTGCATAT  1047

seq1  AATGAGGGCCCCATATGTGGTTATGG-CACAATAAGAGAATGCCAGTGAG  1098
      |  |||||  |||||||  | ||||| ||||||||||||||| |||||||
seq2  ATGGAGGG--CCATATGGTGGTATGGCCACAATAAGAGAATG-CAGTGAG  1094

seq1  CCAGGGAAATTTAAGTTTTATAATAAGTCGCTTCTATGGTGATAACCCAT  1148
      | |||  |||| |||||||||||||  |||||||   || | |||  |||
seq2  CAAGG--AATTAAAGTTTTATAATAGTTCGCTTCCTAGGGGGTAA--CAT  1140

seq1  CAATGGACCCATTTATTTAGCCACAGATTAACTCCTCT  1186
      ||||| |  ||||||||||||  |||| ||||||||||
seq2  CAATGAA--CATTTATTTAGC--CAGAATAACTCCTCT  1174


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