BAC Information

Click to search

BAC

Clone NameB6Ng01-259B19
Chromosome6 (Build37)
Map Location 130,988,487 - 131,116,341
singlet/doubletdoublet
Overlap geneEG625648, LOC667830, EG434094
Upstream geneLOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628
Downstream geneKlra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259B19.bB6Ng01-259B19.g
ACCGA064382GA064383
length1,1941,169
definitionB6Ng01-259B19.b B6Ng01-259B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,115,481 - 131,116,341)(130,988,487 - 130,989,657)
sequence
gaattcacacaggagagaaaccttacaaatgtaatgaatgtgggaaatca
tttaaacagaactcacaacttcaagttcactacagaatccacacaggcga
gaaaccttacagatgtagtaactgtgggaaatcttttacacagaactcac
aacttcaagttcactacagaatccacacaggagagaaaccttacaaatgt
aatgaatgtggcaaatcctttacacaatcctacagacttcaagttcacta
cagaatccatacatgatagaagccttaaaatgtaatcaatgaggcaactc
ttttatatgggatacagtgattaaagttcactaccgaatccatacaagag
ggaaaccttaaaaattttttgattgctgcaaatcctttacaaagaactca
gagcttaaagttcaccaaagaatctgtacaggggacaaaccttataaata
taatgaatgctgcaaatcctttacacaacactcagatcataaagctctcc
acagaattcattctggagagaaatcttacaaatgaaatgaaggtggcata
tcattaactaactctccaagtctttattttcactaaagtatctacacaag
agataaaccttacaaatgtggaatgtgtggcaaatcttttacctgttcct
ccattttccaagttcatcaaagaacccacattggacaacaaccttgtatg
tggagtgactttgggaaatacttttccctgtcctaaaattgttaatatca
cacaagaatacaaactagagacaacgttattaatgtaaagaatgtgaaaa
atccttgacatggaaataatcccttcaaacacaacccagcgtgcatcctg
gagagaaatattagaaatatataggccatggcaatattttagcaaaacct
caaagcttggagcacatagatctatgcatgaagctaacttaattgaaaat
tattgtcccaatattcataaaggaaatgttatttaaaatgagaaaatatt
ggcagaatttaaataatgttaaaaccccataatagaagaattctcaataa
aaaccctatattgatagtagtggatcatttacacaatcacttatattctt
atagtactttttcaaacatatgcaactcttcacccagcattaatcatctg
gactgtgatcataattgtatagagaagtccatttttaaaatcac
gaattctgtaataaagttgcttatctgattttcacttgattttgttttac
aaaaggaatcttctaataagtcattaccttgatataatatctctctatat
tgattgcttaggtaatacatcagtaaagcattcttaacagagcctatatt
aatatcaattatcatgttagagattttaaaattacctcccacattatatc
ttccatgattcattgcattcatagattctttcttatgttgatctacatcg
tataacttgtcactgagtaggttttctatcaaaatttatggtatttccca
caacattgtgggaaatgccataaattttgagagaagattccttcaccttg
atgacattcagtacgtttttctctgctccacaatatcatttgttcataaa
gcactgaagcactgtttaatctcatattctgtaatatatacatcaggaaa
cacaacttattcacccaaatgtcacttttaatgcatgtgtatttccgtgt
aaaatagagttgtgcttcaaatcttgtgaattttttttcctagagaatcc
tccagttgtgaatatgggagtgacccagactgactcctttcaagggaagt
tatggcttctggataattttcagaaatgaaaaagatgtgcttttcaaact
gatcatttacatgatcatatatttcatagtctgcactatcatgtctatat
tcccagaataaagataagcaactttccaaagatatctaaaaggctactac
atacaaaacttcgtgttattttgttctggaagtaatcctgtgtatgtcct
ttgggaagtagattcttggtataatcacatgacaaacctgaaaatattaa
aaacaaataattatatgacattttggagttaggtgaaaacatgtacatgc
ataatacatgaaaaagcaccaatgtgagcatcatacaaaatcagtacaga
aaatgtagcaatttttcttaagatgaacaatttcataaacattatgtata
tcagatgatatttcataaatatgataaatatttttatatattatgaatgt
catattattcagtaataaacacctacactgaaacagaaattggtggaaac
ctttaataataaacttcttccctctgttaaaatgatctccaaattggaaa
atacataatctttccaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_131115481_131116341
seq2: B6Ng01-259B19.b_388_1236 (reverse)

seq1  GTGA-TTTAAAAATGAA---TTCTATACAATTATTGATCAACAATGTCAG  46
      |||| |||||||||| |    |||||||||||| ||||| ||| |  |||
seq2  GTGATTTTAAAAATGGACTTCTCTATACAATTA-TGATC-ACAGT-CCAG  47

seq1  ATGATTAATGCTGGGTGAAAGAGTTTTGCATATGTTTGAAAAAAGTACTT  96
      ||||||||||||||||| |||||  ||||||||||||| |||||||||| 
seq2  ATGATTAATGCTGGGTG-AAGAG--TTGCATATGTTTG-AAAAAGTACT-  92

seq1  AATAAGAATATAAGTTGAATTTGGTGGTAAAATGATTCCAACTACTATCA  146
       ||||||||||||| ||| | ||      |||||||  | ||||||||||
seq2  -ATAAGAATATAAG-TGATTGTG-----TAAATGAT--CCACTACTATCA  133

seq1  ATATAGGGTTTTTA-TGAGAATTC-TCTATTAATGGGGTTTTAACATTAT  194
      |||||||||||||| ||||||||| |||||| ||||||||||||||||||
seq2  ATATAGGGTTTTTATTGAGAATTCTTCTATT-ATGGGGTTTTAACATTAT  182

seq1  TTAAATTCTGCCAATAATTTTCTCATTTTAAATAACATTTCC-TTATGAA  243
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  TTAAATTCTGCCAAT-ATTTTCTCATTTTAAATAACATTTCCTTTATGAA  231

seq1  TATTGGGACAATAATTTTCAATTAAGTTAGCTTCATGCATAGATCTATGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGACAATAATTTTCAATTAAGTTAGCTTCATGCATAGATCTATGT  281

seq1  GCTCCAAGCTTTGAGGTTTTGCTAAAATATTGCCATGGCCTATATATTTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAGCTTTGAGGTTTTGCTAAAATATTGCCATGGCCTATATATTTC  331

seq1  TAATATTTCTCTCCAGGATGCACGCTGGGTTGTGTTTGAAGGGATTATTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTCTCTCCAGGATGCACGCTGGGTTGTGTTTGAAGGGATTATTT  381

seq1  CCATGTCAAGGATTTTTCACATTCTTTACATTAATAACGTTGTCTCTAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCAAGGATTTTTCACATTCTTTACATTAATAACGTTGTCTCTAGT  431

seq1  TTGTATTCTTGTGTGATATTAACAATTTTAGGACAGGGAAAAGTATTTCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTCTTGTGTGATATTAACAATTTTAGGACAGGGAAAAGTATTTCC  481

seq1  CAAAGTCACTCCACATACAAGGTTGTTGTCCAATGTGGGTTCTTTGATGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCACTCCACATACAAGGTTGTTGTCCAATGTGGGTTCTTTGATGA  531

seq1  ACTTGGAAAATGGAGGAACAGGTAAAAGATTTGCCACACATTCCACATTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAAATGGAGGAACAGGTAAAAGATTTGCCACACATTCCACATTT  581

seq1  GTAAGGTTTATCTCTTGTGTAGATACTTTAGTGAAAATAAAGACTTGGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTTTATCTCTTGTGTAGATACTTTAGTGAAAATAAAGACTTGGAG  631

seq1  AGTTAGTTAATGATATGCCACCTTCATTTCATTTGTAAGATTTCTCTCCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTAATGATATGCCACCTTCATTTCATTTGTAAGATTTCTCTCCA  681

seq1  GAATGAATTCTGTGGAGAGCTTTATGATCTGAGTGTTGTGTAAAGGATTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATTCTGTGGAGAGCTTTATGATCTGAGTGTTGTGTAAAGGATTT  731

seq1  GCAGCATTCATTATATTTATAAGGTTTGTCCCCTGTACAGATTCTTTGGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTCATTATATTTATAAGGTTTGTCCCCTGTACAGATTCTTTGGT  781

seq1  GAACTTTAAGCTCTGAGTTCTTTGTAAAGGATTTGCAGCAATCAAAAAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTAAGCTCTGAGTTCTTTGTAAAGGATTTGCAGCAATCAAAAAAT  831

seq1  TTTTAAGGTTTCCCTCTT  861
      ||||||||||||||||||
seq2  TTTTAAGGTTTCCCTCTT  849

seq1: chr6_130988487_130989657
seq2: B6Ng01-259B19.g_68_1236

seq1  GAATTCTGTAATAAAGTTGCTTATCTGATTTTCACTTGATTTTGTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAATAAAGTTGCTTATCTGATTTTCACTTGATTTTGTTTTAC  50

seq1  AAAAGGAATCTTCTAATAAGTCATTACCTTGATATAATATCTCTCTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAATCTTCTAATAAGTCATTACCTTGATATAATATCTCTCTATAT  100

seq1  TGATTGCTTAGGTAATACATCAGTAAAGCATTCTTAACAGAGCCTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTTAGGTAATACATCAGTAAAGCATTCTTAACAGAGCCTATATT  150

seq1  AATATCAATTATCATGTTAGAGATTTTAAAATTACCTCCCACATTATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAATTATCATGTTAGAGATTTTAAAATTACCTCCCACATTATATC  200

seq1  TTCCATGATTCATTGCATTCATAGATTCTTTCTTATGTTGATCTACATCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGATTCATTGCATTCATAGATTCTTTCTTATGTTGATCTACATCG  250

seq1  TATAACTTGTCACTGAGTAGGTTTTCTATCAAAATTTATGGTATTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTGTCACTGAGTAGGTTTTCTATCAAAATTTATGGTATTTCCCA  300

seq1  CAACATTGTGGGAAATGCCATAAATTTTGAGAGAAGATTCCTTCACCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGTGGGAAATGCCATAAATTTTGAGAGAAGATTCCTTCACCTTG  350

seq1  ATGACATTCAGTACGTTTTTCTCTGCTCCACAATATCATTTGTTCATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTCAGTACGTTTTTCTCTGCTCCACAATATCATTTGTTCATAAA  400

seq1  GCACTGAAGCACTGTTTAATCTCATATTCTGTAATATATACATCAGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAAGCACTGTTTAATCTCATATTCTGTAATATATACATCAGGAAA  450

seq1  CACAACTTATTCACCCAAATGTCACTTTTAATGCATGTGTATTTCCGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTATTCACCCAAATGTCACTTTTAATGCATGTGTATTTCCGTGT  500

seq1  AAAATAGAGTTGTGCTTCAAATCTTGTGAATTTTTTTTCCTAGAGAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAGTTGTGCTTCAAATCTTGTGAATTTTTTTTCCTAGAGAATCC  550

seq1  TCCAGTTGTGAATATGGGAGTGACCCAGACTGACTCCTTTCAAGGGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTGTGAATATGGGAGTGACCCAGACTGACTCCTTTCAAGGGAAGT  600

seq1  TATGGCTTCTGGATAATTTTCAGAAATGAAAAAGATGTGCTTTTCAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTCTGGATAATTTTCAGAAATGAAAAAGATGTGCTTTTCAAACT  650

seq1  GATCATTTACATGATCATATATTTCATAGTCTGCACTATCATGTCTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTTACATGATCATATATTTCATAGTCTGCACTATCATGTCTATAT  700

seq1  TCCCAGAATAAAGATAAGCAACTTTCCAAAGATATCTAAAAGGCTACTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAATAAAGATAAGCAACTTTCCAAAGATATCTAAAAGGCTACTAC  750

seq1  ATACAAAACTTCGTGTTATTTTGTTCTGGAAGTAATCCTGTGTATGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAACTTCGTGTTATTTTGTTCTGGAAGTAATCCTGTGTATGTCCT  800

seq1  TTGGGAAGTAGATTCTTGGTATAATCACATGACAAACCTGAAAATATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGTAGATTCTTGGTATAATCACATGACAAACCTGAAAATATTAA  850

seq1  AAACAAATAATTATATGACATTTTGGAGTTAGGTGAAAACAATGTACATG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAACAAATAATTATATGACATTTTGGAGTTAGGTGAAAAC-ATGTACATG  899

seq1  CATAATACATGAAAAAGCACCAATGTGAGCATCATACAAAATCAGTACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATACATGAAAAAGCACCAATGTGAGCATCATACAAAATCAGTACAG  949

seq1  -AAATGTAGCAATTTTCTTAAAGATGAACAATTTCATAAACATTATGTAT  999
       |||||||||||||||  | ||||||||||||||||||||||||||||||
seq2  AAAATGTAGCAATTTTTCTTAAGATGAACAATTTCATAAACATTATGTAT  999

seq1  ATCAGATGATATTTCATAAAATATGATAAATATTTTATAATATTATGAAT  1049
      ||||||||||||||||| ||||||||||||||||||   |||||||||||
seq2  ATCAGATGATATTTCAT-AAATATGATAAATATTTTTATATATTATGAAT  1048

seq1  GTCATAATTATTCAGTA--TAACA-CTACAACTTGAAACAG-AATTGGTG  1095
      ||||| |||||||||||   |||| |||||   |||||||| ||||||||
seq2  GTCAT-ATTATTCAGTAATAAACACCTACA--CTGAAACAGAAATTGGTG  1095

seq1  GAACCCTTTAATTAATAAAACTTCTTCCCTCTGTAAAAATGAATCTTCAA  1145
      ||| ||||||| |||| ||||||||||||||||| |||||| |||| |||
seq2  GAAACCTTTAA-TAAT-AAACTTCTTCCCTCTGTTAAAATG-ATCTCCAA  1142

seq1  TATGG-GAATACATAATCTTTCCAATG  1171
        |||  ||||||||||||||||||||
seq2  ATTGGAAAATACATAATCTTTCCAATG  1169