BAC Information

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BAC

Clone NameB6Ng01-259J16
Chromosome6 (Build37)
Map Location 87,521,467 - 87,706,901
singlet/doubletdoublet
Overlap geneProkr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118
Upstream geneAsprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25
Downstream geneEG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259J16.bB6Ng01-259J16.g
ACCGA064743GA064744
length9491,146
definitionB6Ng01-259J16.b B6Ng01-259J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,706,329 - 87,706,901)(87,521,467 - 87,522,595)
sequence
gaattctgggtgtgcatcaccatgcctggcttcagtattattttaaattt
tattttgttttgcatttattctgcctgtgctctttttgtcttctggatct
gtgctttggcgcctggcaggagcgtggggacgttcagccaaatctgctgt
agctgttggtctgtattccctcccctcagttacacatgctggagttgtcc
aacacttcctggccctttctgctccccgttcctagacttttcatctctgc
tgctcagttctagaattttctaggacgtgtctctggagttcttcctcgct
cgttcctaccatcgtctctgagcctctctctggagtccttcctcatttgt
accatcatctctgatcatatggaagagttctttactctgtttggttgtac
gattctgagcaatccttggcccttccttgggatacgcatcctatgtttgt
gttgcttgcttggccttgcatgcggctggcctcttcctttagagctgcct
ggtaaccagatgtttcaaattcctagtctgatgtttcgtgactctcttga
tacagtcagggatgactgtctcttcagactatcttctgcgaaagactgac
tccatgtgctgggtaaggaactccagaagctgagcctttagtgatgtggt
aataaaaatgtaggtaggaagtaggtgttctgttactccaggattagcta
gctgcataggggactatggcctattgttccagatgcctgggagccaggag
gatagcttgagcccaggagtttgagactagcctaagcaacatagggggaa
tccccctcaaagaatgtaaaacaaccaaacacagcgcctgtgatcatggc
tgttttagggattctaaacttgtctctggtctgctctcccttggctgggt
cgggccagctctgcccagtttgtcaggctctgatgaagcctgcacctct
gaattccatcatttcctttaaattggaaacttaacttacatcttcattat
tatgttcttaaatctttcaaatccctgtcactctctgctatgcattatgt
ccattgttatagatgtacttttctaagaaaatagaacatagactgtcagg
agccaacaggctaataactagtaggtgatctttctaagatagtccacctt
ggattaaaaaaaatctatgacggagttgctccattagacaaggttcagga
gaaatccattttaggaaagactcctgctattaatatgcttttcctgttgt
tattagtaaacatatataacaatcactagatattagcccacccttttgag
cagatctccacagaacaatgaagatgtactgtcttgtagtgatgctctat
aaacaaatagatgacttcctaattcctaatgatgatcctataagaattcc
taaaactatatcagtatttattaagctcttttatagtgggactgctatta
ggttctttctgatagtcaaaactgcaacaagaactctgccagtctttagt
gtcatgagttaattgcttctgagatagtaagcagtcagtcttctactcag
agcacattccaaaaggtttgaccattaactagagatcataaaaagggaac
tagctttattatagatgctaggacagaagataaaatattgactgggttta
tctatacaaaacttcactaataacttaattatgatttttaactctccatg
aacctgtggagctgtgacaggtgatgaatgtttagtcagataattactcc
taaatggatactcgtgtaaacatcctctgttgtgagcttcttgttcgatc
tatgacttgtatttatgtgtatacttgtgatgaacttttttaccacgtga
tcgtgtattttgaaagatgtattaagttgttgagtaaaagagaaggagga
cacactctctctcctggtcccggctgctttttcttagcgttctcctattc
ccctttttcttagagaacctttcataggggactttaggaaataaaatgct
aaaattcacctttcaaagcattcttcttttttctttcttgcaccttacta
ggcaagctgaaaattaagatcccacattcctgcagagattagaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87706329_87706901
seq2: B6Ng01-259J16.b_423_994 (reverse)

seq1  AGAGGTGCAGGCTTCATCAGAGCCCTGACAAACTGGGCAGAGCTGGCCCG  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAGGTGCAGGCTTCATCAGAG-CCTGACAAACTGGGCAGAGCTGGCCCG  49

seq1  ACCCAGCCAAGGGAGAGCAGACCAGAGACAAGTTTAGAATCCCTAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCAAGGGAGAGCAGACCAGAGACAAGTTTAGAATCCCTAAAACA  99

seq1  GCCATGATCACAGGCGCTGTGTTTGGTTGTTTTACATTCTTTGAGGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATCACAGGCGCTGTGTTTGGTTGTTTTACATTCTTTGAGGGGGA  149

seq1  TTCCCCCTATGTTGCTTAGGCTAGTCTCAAACTCCTGGGCTCAAGCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTATGTTGCTTAGGCTAGTCTCAAACTCCTGGGCTCAAGCTATC  199

seq1  CTCCTGGCTCCCAGGCATCTGGAACAATAGGCCATAGTCCCCTATGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCTCCCAGGCATCTGGAACAATAGGCCATAGTCCCCTATGCAGC  249

seq1  TAGCTAATCCTGGAGTAACAGAACACCTACTTCCTACCTACATTTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAATCCTGGAGTAACAGAACACCTACTTCCTACCTACATTTTTATT  299

seq1  ACCACATCACTAAAGGCTCAGCTTCTGGAGTTCCTTACCCAGCACATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATCACTAAAGGCTCAGCTTCTGGAGTTCCTTACCCAGCACATGGA  349

seq1  GTCAGTCTTTCGCAGAAGATAGTCTGAAGAGACAGTCATCCCTGACTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTTTCGCAGAAGATAGTCTGAAGAGACAGTCATCCCTGACTGTA  399

seq1  TCAAGAGAGTCACGAAACATCAGACTAGGAATTTGAAACATCTGGTTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGAGTCACGAAACATCAGACTAGGAATTTGAAACATCTGGTTACC  449

seq1  AGGCAGCTCTAAAGGAAGAGGCCAGCCGCATGCAAGGCCAAGCAAGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTCTAAAGGAAGAGGCCAGCCGCATGCAAGGCCAAGCAAGCAAC  499

seq1  ACAAACATAGGATGCGTATCCCAAGGAAGGGCCAAGGATTGCTCAGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATAGGATGCGTATCCCAAGGAAGGGCCAAGGATTGCTCAGAATC  549

seq1  GTACAACCAAACAGAGTAAAGAA  573
      |||||||||||||||||||||||
seq2  GTACAACCAAACAGAGTAAAGAA  572

seq1: chr6_87521467_87522595
seq2: B6Ng01-259J16.g_68_1213

seq1  GAATTCCATCATTTCCTTTAAATTGGAAACTTAACTTACATCTTCATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCATTTCCTTTAAATTGGAAACTTAACTTACATCTTCATTAT  50

seq1  TATGTTCTTAAATCTTTCAAATCCCTGTCACTCTCTGCTATGCATTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTTAAATCTTTCAAATCCCTGTCACTCTCTGCTATGCATTATGT  100

seq1  CCATTGTTATAGATGTACTTTTCTAAGAAAATAGAACATAGACTGTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTATAGATGTACTTTTCTAAGAAAATAGAACATAGACTGTCAGG  150

seq1  AGCCAACAGGCTAATAACTAGTAGGTGATCTTTCTAAGATAGTCCACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACAGGCTAATAACTAGTAGGTGATCTTTCTAAGATAGTCCACCTT  200

seq1  GGATTAAAAAAAATCTATGACGGAGTTGCTCCATTAGACAAGGTTCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAAAAAATCTATGACGGAGTTGCTCCATTAGACAAGGTTCAGGA  250

seq1  GAAATCCATTTTAGGAAAGACTCCTGCTATTAATATGCTTTTCCTGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCATTTTAGGAAAGACTCCTGCTATTAATATGCTTTTCCTGTTGT  300

seq1  TATTAGTAAACATATATAACAATCACTAGATATTAGCCCACCCTTTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTAAACATATATAACAATCACTAGATATTAGCCCACCCTTTTGAG  350

seq1  CAGATCTCCACAGAACAATGAAGATGTACTGTCTTGTAGTGATGCTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCCACAGAACAATGAAGATGTACTGTCTTGTAGTGATGCTCTAT  400

seq1  AAACAAATAGATGACTTCCTAATTCCTAATGATGATCCTATAAGAATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAGATGACTTCCTAATTCCTAATGATGATCCTATAAGAATTCC  450

seq1  TAAAACTATATCAGTATTTATTAAGCTCTTTTATAGTGGGACTGCTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTATATCAGTATTTATTAAGCTCTTTTATAGTGGGACTGCTATTA  500

seq1  GGTTCTTTCTGATAGTCAAAACTGCAACAAGAACTCTGCCAGTCTTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTCTGATAGTCAAAACTGCAACAAGAACTCTGCCAGTCTTTAGT  550

seq1  GTCATGAGTTAATTGCTTCTGAGATAGTAAGCAGTCAGTCTTCTACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAGTTAATTGCTTCTGAGATAGTAAGCAGTCAGTCTTCTACTCAG  600

seq1  AGCACATTCCAAAAGGTTTGACCATTAACTAGAGATCATAAAAAGGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTCCAAAAGGTTTGACCATTAACTAGAGATCATAAAAAGGGAAC  650

seq1  TAGCTTTATTATAGATGCTAGGACAGAAGATAAAATATTGACTGGGTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTATTATAGATGCTAGGACAGAAGATAAAATATTGACTGGGTTTA  700

seq1  TCTATACAAAACTTCACTAATAACTTAATTATGATTTTTAACTCTCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACAAAACTTCACTAATAACTTAATTATGATTTTTAACTCTCCATG  750

seq1  AACCTGTGGAGCTGTGACAGGTGATGAATGTTTAGTCAGATAATTACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTGGAGCTGTGACAGGTGATGAATGTTTAGTCAGATAATTACTCC  800

seq1  T-AATGGATACTCGTGTAAACATCCTCTGTTGTGAGCTTCTTGTTCGATC  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGATACTCGTGTAAACATCCTCTGTTGTGAGCTTCTTGTTCGATC  850

seq1  TATGACTTGTATTTATGTGTATACTTGTGATGAAC-TTTTTACCACGTGA  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATGACTTGTATTTATGTGTATACTTGTGATGAACTTTTTTACCACGTGA  900

seq1  TCGTGTATTTTGAAAGATGTA-TAAG-TGTTGAGTAAAAGAGAA-GAGGA  945
      ||||||||||||||||||||| |||| ||||||||||||||||| |||||
seq2  TCGTGTATTTTGAAAGATGTATTAAGTTGTTGAGTAAAAGAGAAGGAGGA  950

seq1  CACACTCTCTCTCCT-GTCCC-GCTGC-TTTTCTTAGCGTTCTCCTATTC  992
      ||||||||||||||| ||||| ||||| ||||||||||||||||||||||
seq2  CACACTCTCTCTCCTGGTCCCGGCTGCTTTTTCTTAGCGTTCTCCTATTC  1000

seq1  CCCTTTTTCTTAGAGAA-CTTTCATA-GGGACTT--AGAAAT-AAATGCT  1037
      ||||||||||||||||| |||||||| |||||||   ||||| |||||||
seq2  CCCTTTTTCTTAGAGAACCTTTCATAGGGGACTTTAGGAAATAAAATGCT  1050

seq1  AAAA-TCACTTTTCAAAGCA----TCTCTTTTTCTTCCTGCAACTTTAAC  1082
      |||| |||| ||||||||||    ||| ||||  ||| |||| |||  ||
seq2  AAAATTCACCTTTCAAAGCATTCTTCTTTTTTCTTTCTTGCACCTT--AC  1098

seq1  TA-GCAGGCTGAAAATTAGAATCCCACAATTCCTGCAGAGA-TAGAACA  1129
      || ||| |||||||||||  ||||||| ||||||||||||| |||||||
seq2  TAGGCAAGCTGAAAATTAAGATCCCAC-ATTCCTGCAGAGATTAGAACA  1146