BAC Information

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BAC

Clone NameB6Ng01-261B03
Chromosome6 (Build37)
Map Location 102,358,614 - 102,535,067
singlet/doubletdoublet
Overlap geneCntn3
Upstream geneEG666084, EG666123
Downstream geneChl1, LOC666141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261B03.bB6Ng01-261B03.g
ACCGA065832GA065833
length3951,095
definitionB6Ng01-261B03.b B6Ng01-261B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,358,614 - 102,359,014)(102,533,957 - 102,535,067)
sequence
ccaagaacagcaacagaaatcagtcagggaggagcagatgtaatattctg
atcagagaacttccagtacagtataaggtccagccttgcagtcaaccaca
cttgtaacaattttaggcaggcagtcaactctgtggaccctgcacactaa
aactctgaacatcaggaatgagcgaaagaacatcagactcaaggccaaga
agtacatagaccagggtttcatgaagatatataactgttgtgtaggaatc
agtctgaaatggcatattccaaacagccttaggacatgttattcaagaac
actgctaaaggcaccgatgttgctcaaactctgagagcgtatacagaaaa
attgtcctcaattgggcagacttctgggattggggggggggtatg

gaattcagtacaaaggaagaagggaggtttcacgtattgatgagagaaga
tttgaggctttgaatctagagtgtttgaaattgatatcaacactgggttt
tacatttctatgacaaataggttttcctttgtgtttgggtatctattatt
tgatatcaaaggctcggtaaccttgaatactaatgagagtaaccagagtg
cagagttggatttgtacttaatttagagtgtagttgcaagttttttgaac
tgaagatgtggagtggcatatgagagaggtgacaggctatgaaatgaatt
tgctataaatcaattgcagtttacttataaaaaaataaaagaggaagaca
gagtggcatatgagtggataataagaaagttaaatgggcaaataaaagaa
ttttctctggacatgaattagatattgattaaaatatatagatgtcttct
gattcatttttaatagtttggttacgtaaataggtgaagaatgtgcagaa
ggagactatgccacataactagaggtgtacagtgtgtagtacatatctat
gaaataattttttattgcatagaggaccaatatcatttaatgctgaattg
gaaagacagaagtgctttccaaatatctaatctaacaatcattgcaacag
atgcagggccttggaggcttgcatgattctatttagcgagcagttaaggg
agaaataagggaaaagagacacaattttcctgctctccttattttaatgt
ctagaatatttctgactcattgaagtccatatgcctctacactcttatgg
ttcaagttcaaatattttattctcaaatctaaggtagtccaaccaagtgg
ctttcaagtttctcacaagccaccaaccactgacacacatcatccagtcc
ttcccacagatctcatcagtaaacaaatatgctttgaagaaatgtttgta
tcatccagctgactgtagcatttcagtacacagtttccagtacaaaggga
aaaacccatatctagaaatcagtctttaaaagatatttacattaatctgc
attatggggatatgaataatgatacatgaacaaataagaaacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_102358614_102359014
seq2: B6Ng01-261B03.b_43_443

seq1  GAATTCCCAAGAACAGCAACAGAAATCAGTCAGGGAGGAGCAGATGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGAACAGCAACAGAAATCAGTCAGGGAGGAGCAGATGTAAT  50

seq1  ATTCTGATCAGAGAACTTCCAGTACAGTATAAGGTCCAGCCTTGCAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATCAGAGAACTTCCAGTACAGTATAAGGTCCAGCCTTGCAGTCA  100

seq1  ACCACACTTGTAACAATTTTAGGCAGGCAGTCAACTCTGTGGACCCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACTTGTAACAATTTTAGGCAGGCAGTCAACTCTGTGGACCCTGCA  150

seq1  CACTAAAACTCTGAACATCAGGAATGAGCGAAAGAACATCAGACTCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAACTCTGAACATCAGGAATGAGCGAAAGAACATCAGACTCAAGG  200

seq1  CCAAGAAGTACATAGACCAGGGTTTCATGAAGATATATAACTGTTGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGTACATAGACCAGGGTTTCATGAAGATATATAACTGTTGTGTA  250

seq1  GGAATCAGTCTGAAATGGCATATTCCAAACAGCCTTAGGACATGTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGTCTGAAATGGCATATTCCAAACAGCCTTAGGACATGTTATTC  300

seq1  AAGAACACTGCTAAAGGCACCGATGTTGCTCAAACTCTGAGAGCGTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACTGCTAAAGGCACCGATGTTGCTCAAACTCTGAGAGCGTATAC  350

seq1  AGAAAAATTGTCCTCAATTGGGCAGACTTCTGGGATTGGGGGGGGGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTGTCCTCAATTGGGCAGACTTCTGGGATTGGGGGGGGGGTAT  400

seq1  G  401
      |
seq2  G  401


seq1: chr6_102533957_102535067
seq2: B6Ng01-261B03.g_68_1162 (reverse)

seq1  GATGTTTCTATTTTGTTTCATGTATCATTTAATCCCTTATCCCCAATTAA  50
      |||||||||  |||| |||||||||||||  ||  | ||||||||    |
seq2  GATGTTTCTTATTTG-TTCATGTATCATT--AT-TCATATCCCCA---TA  43

seq1  ATGCAGATTTAAATGTAAATATCTTTTAAAGACCTGATTTTCCTAGATTA  100
      |||||||||  ||||||||||||||||||||| |||||||  ||||| ||
seq2  ATGCAGATT--AATGTAAATATCTTTTAAAGA-CTGATTT--CTAGA-TA  87

seq1  TGGGTTTTTTCCCTTTGTACTGGAAAACTGTGTACTGAAATGCTACAGTC  150
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGG-TTTTTCCCTTTGTACTGG-AAACTGTGTACTGAAATGCTACAGTC  135

seq1  AGCTGGATGATACAAACATTTCTTCAAAGCATATTTGTTTACTGATGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATGATACAAACATTTCTTCAAAGCATATTTGTTTACTGATGAGA  185

seq1  TCTGTGGGGAAGGACTGGATGATGTGTGTCAGTGGTTGGTGGCTTGTGAG  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGT-GGGAAGGACTGGATGATGTGTGTCAGTGGTTGGTGGCTTGTGAG  234

seq1  AAACTTGAAAGCCACTTGGTTGGACTACCTTAGATTTGAGAATAAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAAAGCCACTTGGTTGGACTACCTTAGATTTGAGAATAAAATAT  284

seq1  TTGAACTTGAACCATAAGAGTGTAGAGGCATATGGACTTCAATGAGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTGAACCATAAGAGTGTAGAGGCATATGGACTTCAATGAGTCAG  334

seq1  AAATATTCTAGACATTAAAATAAGGAGAGCAGGAAAATTGTGTCTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTAGACATTAAAATAAGGAGAGCAGGAAAATTGTGTCTCTTTT  384

seq1  CCCTTATTTCTCCCTTAACTGCTCGCTAAATAGAATCATGCAAGCCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATTTCTCCCTTAACTGCTCGCTAAATAGAATCATGCAAGCCTCCA  434

seq1  AGGCCCTGCATCTGTTGCAATGATTGTTAGATTAGATATTTGGAAAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGCATCTGTTGCAATGATTGTTAGATTAGATATTTGGAAAGCAC  484

seq1  TTCTGTCTTTCCAATTCAGCATTAAATGATATTGGTCCTCTATGCAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTTCCAATTCAGCATTAAATGATATTGGTCCTCTATGCAATAA  534

seq1  AAAATTATTTCATAGATATGTACTACACACTGTACACCTCTAGTTATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTCATAGATATGTACTACACACTGTACACCTCTAGTTATGTG  584

seq1  GCATAGTCTCCTTCTGCACATTCTTCACCTATTTACGTAACCAAACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTCTCCTTCTGCACATTCTTCACCTATTTACGTAACCAAACTATT  634

seq1  AAAAATGAATCAGAAGACATCTATATATTTTAATCAATATCTAATTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAATCAGAAGACATCTATATATTTTAATCAATATCTAATTCATG  684

seq1  TCCAGAGAAAATTCTTTTATTTGCCCATTTAACTTTCTTATTATCCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAAAATTCTTTTATTTGCCCATTTAACTTTCTTATTATCCACTC  734

seq1  ATATGCCACTCTGTCTTCCTCTTTTATTTTTTTATAAGTAAACTGCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCACTCTGTCTTCCTCTTTTATTTTTTTATAAGTAAACTGCAATT  784

seq1  GATTTATAGCAAATTCATTTCATAGCCTGTCACCTCTCTCATATGCCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATAGCAAATTCATTTCATAGCCTGTCACCTCTCTCATATGCCACT  834

seq1  CCACATCTTCAGTTCAAAAAACTTGCAACTACACTCTAAATTAAGTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCTTCAGTTCAAAAAACTTGCAACTACACTCTAAATTAAGTACAA  884

seq1  ATCCAACTCTGCACTCTGGTTACTCTCATTAGTATTCAAGGTTACCGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACTCTGCACTCTGGTTACTCTCATTAGTATTCAAGGTTACCGAGC  934

seq1  CTTTGATATCAAATAATAGATACCCAAACACAAAGGAAAACCTATTTGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATATCAAATAATAGATACCCAAACACAAAGGAAAACCTATTTGTC  984

seq1  ATAGAAATGTAAAACCCAGTGTTGATATCAATTTCAAACACTCTAGATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATGTAAAACCCAGTGTTGATATCAATTTCAAACACTCTAGATTC  1034

seq1  AAAGCCTCAAATCTTCTCTCATCAATACGTGAAACCTCCCTTCTTCCTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCAAATCTTCTCTCATCAATACGTGAAACCTCCCTTCTTCCTTT  1084

seq1  GTACTGAATTC  1111
      |||||||||||
seq2  GTACTGAATTC  1095


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