gaattcactagccaaaataaacccttcctacatcaaatatctttttgggg
ccttatttcatagtaaggaaaagttagctaacatattgagactagttatt
cttataattgataatagtaaacttttggtactttgaaaaatgctatgtat
aggtcatactttggacaagtgctttgaatacattgtaattatttgagata
tatgatcttgtattgaagactagttaactgataataaagctaattttgga
ctcatttataatttattcaacaaatgactaaaatgatgtcttacacgtgt
tcgcgaccggccagaaaagacgcaacaaaccggaatcttctgcggcaaag
ctttattgcttacatcttcaggagcaagagagcaagatcaagagcaagag
caagagcaagagagcaagagcaagagcaagagagcaagagagagaatggc
aaaaccccgtcccttttaaggagaattatcctccgcctaggacgtgtcgc
tccctgattggctgcagcccatcggccgagttgtcgtcacggggaaggca
gagcacatggagtggagaactacccttggcacatgcgcagattatttgtt
taccacttagaacacaggatgtcagcgccatcttgtaacagcgaatgtga
gggcggctccccacaatgatggaagcagagctttcatccatgtgcttaat
agtgaaatccttgatgatatcatagaagtctacttacacgtacatagaga
tatatttctctccttcaaatttactgatgtatataagttcatctgttaat
ttaatgatatttacaagagataataacagcctttcttcctcccatactta
aaaatcatacatacttgtactggctagttttgtgtcaacttgacacagct
gggagttaccacagagaaaggagcttcagttgaggaaatgcccccatgag
atccagctgtagggcattttctcaattagtgatcaagggggaaaggcccc
ttgttggggtgggaccatctctgggactggcagtcttgggttcttattaa
gaagagcagctgagcaagcccagggggaggcaagctagtaagaaacatcc
ctccatggcctctggcaatcagctctgctccttgaccttgcttgattcag
tctgaacttcttggtgatgaacagcaa

cctgtctttgttgagtctttgtgtggtttaggtatcagggtggctgtggt
ttcatataatgagttttccagtgctccttctgttctattttgtgtaatag
tttgactacttttagttgaaagtctattttattagtattagaatggccac
ctcagcttgtttcttgggtctgtttgcttggctcacctttttcaaacctt
ttattctgagtagtgttgctgaagtgtgtttcatccattcagtagatata
tggatcctgattatgaatccacactgttatggatataacccaatgccaat
ttattgacaaactgaatccattgatattaagagatattactgaccaatga
ttattagttctttttttttaatgttagtatgtgtgcctgtatttgtctgt
ttgtgtgtgtgtgtgtgtgagagagagagagagagagt

seq1: chr8_5784371_5785541
seq2: B6Ng01-261B23.b_42_1218

seq1  GAATTCACTAGCCAAAATAAACCCTTCCTACATCAAATATCTTTTTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGCCAAAATAAACCCTTCCTACATCAAATATCTTTTTGGGG  50

seq1  CCTTATTTCATAGTAAGGAAAAGTTAGCTAACATATTGAGACTAGTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTCATAGTAAGGAAAAGTTAGCTAACATATTGAGACTAGTTATT  100

seq1  CTTATAATTGATAATAGTAAACTTTTGGTACTTTGAAAAATGCTATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAATTGATAATAGTAAACTTTTGGTACTTTGAAAAATGCTATGTAT  150

seq1  AGGTCATACTTTGGACAAGTGCTTTGAATACATTGTAATTATTTGAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATACTTTGGACAAGTGCTTTGAATACATTGTAATTATTTGAGATA  200

seq1  TATGATCTTGTATTGAAGACTAGTTAACTGATAATAAAGCTAATTTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCTTGTATTGAAGACTAGTTAACTGATAATAAAGCTAATTTTGGA  250

seq1  CTCATTTATAATTTATTCAACAAATGACTAAAATGATGTCTTACACGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTATAATTTATTCAACAAATGACTAAAATGATGTCTTACACGTGT  300

seq1  TCGCGACCGGCCAGAAAAGACGCAACAAACCGGAATCTTCTGCGGCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGACCGGCCAGAAAAGACGCAACAAACCGGAATCTTCTGCGGCAAAG  350

seq1  CTTTATTGCTTACATCTTCAGGAGCAAGAGAGCAAGATCAAGAGCAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGCTTACATCTTCAGGAGCAAGAGAGCAAGATCAAGAGCAAGAG  400

seq1  CAAGAGCAAGAGAGCAAGAGCAAGAGCAAGAGAGCAAGAGAGAGAATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAAGAGAGCAAGAGCAAGAGCAAGAGAGCAAGAGAGAGAATGGC  450

seq1  AAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTGTCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTGTCGC  500

seq1  TCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCA  550

seq1  GAGCACATGGAGTGGAGAACTACCCTTGGCACATGCGCAGATTATTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACATGGAGTGGAGAACTACCCTTGGCACATGCGCAGATTATTTGTT  600

seq1  TACCACTTAGAACACAGGATGTCAGCGCCATCTTGTAACAGCGAATGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTAGAACACAGGATGTCAGCGCCATCTTGTAACAGCGAATGTGA  650

seq1  GGGCGGCTCCCCACAATGATGGAAGCAGAGCTTTCATCCATGTGCTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGCTCCCCACAATGATGGAAGCAGAGCTTTCATCCATGTGCTTAAT  700

seq1  AGTGAAATCCTTGATGATATCATAGAAGTCTACTTACACGTACATAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATCCTTGATGATATCATAGAAGTCTACTTACACGTACATAGAGA  750

seq1  TATATTTCTCTCCTTCAAATTTACTGATGTATATAAGTTCATCTGTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCTCTCCTTCAAATTTACTGATGTATATAAGTTCATCTGTTAAT  800

seq1  TTAATGATATTTACAAGAGATAATAACAGCCTTTCTTCCTCCCATACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATATTTACAAGAGATAATAACAGCCTTTCTTCCTCCCATACTTA  850

seq1  AAAATCATACATACTTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATACATACTTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCT  900

seq1  -GGAGTTACCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCCCCATGAG  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTACCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCCCCATGAG  950

seq1  ATCCAGCTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCC  999
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCTGTAGGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCC  1000

seq1  TTGT--GGGTGGGACCATCTCT-GGACTGGCAGTCTTGGGTTCT--ATAA  1044
      ||||  |||||||||||||||| |||||||||||||||||||||   |||
seq2  TTGTTGGGGTGGGACCATCTCTGGGACTGGCAGTCTTGGGTTCTTATTAA  1050

seq1  G-AGAGCAGGCTGAGCAAGCC--AGGGGAGGCAAGCTAGTAAGAAACATC  1091
      | |||||| ||||||||||||   ||||||||||||||||||||||||||
seq2  GAAGAGCA-GCTGAGCAAGCCCAGGGGGAGGCAAGCTAGTAAGAAACATC  1099

seq1  CCTCCATGGCCTCTG--CATCAGCTCCTGCTTCCTGACC-TGCTTGAGTT  1138
      |||||||||||||||   ||||||| ||||| | ||||| |||||||  |
seq2  CCTCCATGGCCTCTGGCAATCAGCT-CTGCTCCTTGACCTTGCTTGA--T  1146

seq1  CCAGTCCTGACTTCCTTTGGTGATGAACAGCAA  1171
       |||||   |||||  |||||||||||||||||
seq2  TCAGTCTGAACTTC--TTGGTGATGAACAGCAA  1177

seq1: chr6_109712742_109713197
seq2: B6Ng01-261B23.g_300_511 (reverse)

seq1  ACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCACTCACACACACAC  50
                   |||||||||||||||||||   ||| |||||||||| 
seq2  ------------ACTCTCTCTCTCTCTCTCTCACACACACACACACACAA  38

seq1  ACACACAATCTGTAGGAATCCATTGTTGCTAACCCTATGTTGTGAATGAG  100
      ||| ||||  |  ||| |  ||    | |||||  ||       ||  | 
seq2  ACAGACAA-ATACAGGCACACA----TACTAACATTA-------AAAAA-  75

seq1  TTTAAAGATGCCTAAGACCAGCTTTGACAGAAGAGGGTAAACTGAGGCAG  150
         |||||   |||| |  | | |||      |   ||||  |     | 
seq2  ---AAAGA--ACTAATA--ATCATTG------GTCAGTAATATCTCTTA-  111

seq1  ACATCCAT---TTCAGTGTCAGTGCTTAGAGCTGCTGGC--TGGCAAGGA  195
      | ||| ||   |||||| |  ||   || |     ||||  |||     |
seq2  ATATCAATGGATTCAGTTT--GTCAATAAA----TTGGCATTGGGTTATA  155

seq1  TCCAGATACCTACAGGGGCTACTGCCAA--AGGCAGCCAGTGATC-AAGG  242
      |||| |     |||| |   | |   ||  ||| | |||   ||| |  |
seq2  TCCATA-----ACAGTGTGGATTCATAATCAGG-ATCCATATATCTACTG  199

seq1  AAGTTATTCAGCAGGATTTTGTTTTTGTTCTTTTGTTTTGGAAAAAAAAA  292
      ||   ||  | ||                                     
seq2  AATGGATGAAACA-------------------------------------  212

seq1  GGTTATTTTACTGGGGCTGGCACTCTCTGTGGCCAGCAGAAAAACTATGA  342
                                                        
seq2  --------------------------------------------------  212

seq1  ACTCTTTTAAAAAATTTGGAGCTGGAGAGAAGAGAAGGAAAAAGAAAAGT  392
                                                        
seq2  --------------------------------------------------  212

seq1  CACATGTACACACACACAAACAAACACACACACACATACACACACACACT  442
                                                        
seq2  --------------------------------------------------  212

seq1  GAATGGATGAAACA  456
                    
seq2  --------------  212