BAC Information

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BAC

Clone NameB6Ng01-261E02
Chromosome6 (Build37)
Map Location 98,100,560 - 98,101,654
singlet/doubletsinglet
Overlap genenone
Upstream geneTmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b, LOC641241, LOC100043692, Mitf
Downstream geneGm765, LOC666019, LOC665963, LOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261E02.bB6Ng01-261E02.g
ACCGA065971GA065972
length1,096333
definitionB6Ng01-261E02.b B6Ng01-261E02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttttgtagtgttgaactactatcatttctttgacttcctctat
acttctacaccaaggagaagacttaaatttgtcccatgttttcttaacca
atactgtactctgctcatccgcagtaagtatactggaacactgaatgtct
gtcatgtttttgtccttagccatgcaagccttcttctcacgatagttcaa
atgcctttcaatgaggcaactcatagaacttgcaattacttggctcacaa
tagtttcttgtttttcacttttctattcttcctgcatcctgattcctccc
tccctggagcctatctcctggtgattatttagcgaggtcttttgagaaaa
tcacatttccttcacctttgctactgaatatgtcagctggatacagaatt
ttagcttgatcctcacatctcttgacaccctacagatgctccattgtctt
ctgacacctggtgtcactccatttaacctttaatgctctacagttcattg
atgacatttctcggcactgattaactcttgcttaggagtctctgtaattc
ttcagcctgaaggaacatgtctggtattagatagtttaacttatcaacta
taatatatattttctcctgtttgttctggttctccacccccacacccctt
tagaaaaatctaggaaatttttatgctttcatccctgtctgtcaagttca
ctttagagggacacaaaaaagtaatctctatcattaggtattaaagcatt
gtagcactgcaggagtatatgttggtgggagccttaaaactgatccttag
atgaggtggtgatatatgtctatgccagatgtagtggtttgaataggttt
gctcccctccccccatagattcatagactaatttctggcccacagggagt
gacattatttagagttatgccctttgtgagaagtaggggtgggccttgtg
ggaagaaatgtgtcactgtagggataaggcttttaagggtttccatgtgc
tcaagccttcccccaatgcggaagagacagtctccttcctgctttgagtc
agactctcgctctctcagcaccatgtcagctggatgctgcaatgct

ctatgtgtatgcatgagtgggcctctgattcttgtgccttctcttggact
cattcccttctgttggtttgtcctgtccaacttcaatataacagttgtgg
ctttatctgattatgtttagttttgttatattttataactttctcttgga
agcctgttcttttctaatgagagatgaaagagacagaaagggggttcatc
tgggtgggagggggtgcaactggggagagtatagggaggggaagccataa
tcagaatgtattttttttatgtgagtaaatctatttaaaaaaataacaga
aaaaaattaaaaaatctcatctctctctattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98100560_98101654
seq2: B6Ng01-261E02.b_46_1141 (reverse)

seq1  AGCATGGCAGCATCCAGCTGACATGGTGCTGGAGAAGGAGCCGAGAGTCT  50
      ||||| |||||||||||||||||||||||| ||||  ||| |||||||| 
seq2  AGCATTGCAGCATCCAGCTGACATGGTGCT-GAGA--GAG-CGAGAGTC-  45

seq1  TGACTCAAAGGCAGGAAGGAGACTGTCTCTTCCGCATTGGGGGAA-GCTT  99
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  TGACTCAAA-GCAGGAAGGAGACTGTCTCTTCCGCATTGGGGGAAGGCTT  94

seq1  GAGCACATGG-AACCCTT-AAAGCC-TATCCCTACAGTGACACATTTCTT  146
      |||||||||| ||||||| |||||| ||||||||||||||||||||||||
seq2  GAGCACATGGAAACCCTTAAAAGCCTTATCCCTACAGTGACACATTTCTT  144

seq1  CCAACAAGG-CCACCCCTAC-TCTCAC-AAGGGCATAACTCCTAATAATG  193
      || |||||| |||||||||| |||||| |||||||||||||  |||||||
seq2  CCCACAAGGCCCACCCCTACTTCTCACAAAGGGCATAACTCTAAATAATG  194

seq1  TCACTCCCTGTGGGCCAGAAATTAGTCTATGAATCTATGGGGGGAGGGGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCCTGTGGGCCAGAAATTAGTCTATGAATCTATGGGGGGAGGGGA  244

seq1  GCAAACCTATTCAAACCACTACATCTGGCATAGACATATATCACCACCTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCTATTCAAACCACTACATCTGGCATAGACATATATCACCACCTC  294

seq1  ATCTAAGGATCAGTTTTAAGGCTCCCACCAACATATACTCCTGCAGTGCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGGATCAGTTTTAAGGCTCCCACCAACATATACTCCTGCAGTGCT  344

seq1  ACAATGCTTTAATACCTAATGATAGAGATTACTTTTTTGTGTCCCTCTAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTTTAATACCTAATGATAGAGATTACTTTTTTGTGTCCCTCTAA  394

seq1  AGTGAACTTGACAGACAGGGATGAAAGCATAAAAATTTCCTAGATTTTTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTTGACAGACAGGGATGAAAGCATAAAAATTTCCTAGATTTTTC  444

seq1  TAAAGGGGTGTGGGGGTGGAGAACCAGAACAAACAGGAGAAAATATATAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGGTGTGGGGGTGGAGAACCAGAACAAACAGGAGAAAATATATAT  494

seq1  TATAGTTGATAAGTTAAACTATCTAATACCAGACATGTTCCTTCAGGCTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTGATAAGTTAAACTATCTAATACCAGACATGTTCCTTCAGGCTG  544

seq1  AAGAATTACAGAGACTCCTAAGCAAGAGTTAATCAGTGCCGAGAAATGTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTACAGAGACTCCTAAGCAAGAGTTAATCAGTGCCGAGAAATGTC  594

seq1  ATCAATGAACTGTAGAGCATTAAAGGTTAAATGGAGTGACACCAGGTGTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGAACTGTAGAGCATTAAAGGTTAAATGGAGTGACACCAGGTGTC  644

seq1  AGAAGACAATGGAGCATCTGTAGGGTGTCAAGAGATGTGAGGATCAAGCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAATGGAGCATCTGTAGGGTGTCAAGAGATGTGAGGATCAAGCT  694

seq1  AAAATTCTGTATCCAGCTGACATATTCAGTAGCAAAGGTGAAGGAAATGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTGTATCCAGCTGACATATTCAGTAGCAAAGGTGAAGGAAATGT  744

seq1  GATTTTCTCAAAAGACCTCGCTAAATAATCACCAGGAGATAGGCTCCAGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTCAAAAGACCTCGCTAAATAATCACCAGGAGATAGGCTCCAGG  794

seq1  GAGGGAGGAATCAGGATGCAGGAAGAATAGAAAAGTGAAAAACAAGAAAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGAATCAGGATGCAGGAAGAATAGAAAAGTGAAAAACAAGAAAC  844

seq1  TATTGTGAGCCAAGTAATTGCAAGTTCTATGAGTTGCCTCATTGAAAGGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGAGCCAAGTAATTGCAAGTTCTATGAGTTGCCTCATTGAAAGGC  894

seq1  ATTTGAACTATCGTGAGAAGAAGGCTTGCATGGCTAAGGACAAAAACATG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTATCGTGAGAAGAAGGCTTGCATGGCTAAGGACAAAAACATG  944

seq1  ACAGACATTCAGTGTTCCAGTATACTTACTGCGGATGAGCAGAGTACAGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATTCAGTGTTCCAGTATACTTACTGCGGATGAGCAGAGTACAGT  994

seq1  ATTGGTTAAGAAAACATGGGACAAATTTAAGTCTTCTCCTTGGTGTAGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTAAGAAAACATGGGACAAATTTAAGTCTTCTCCTTGGTGTAGAA  1044

seq1  GTATAGAGGAAGTCAAAGAAATGATAGTAGTTCAACACTACAAAAGGAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAGGAAGTCAAAGAAATGATAGTAGTTCAACACTACAAAAGGAAT  1094

seq1  TC  1095
      ||
seq2  TC  1096


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