BAC Information

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BAC

Clone NameB6Ng01-261E09
Chromosome6 (Build37)
Map Location 36,302,901 - 36,466,881
singlet/doubletdoublet
Overlap gene9330158H04Rik
Upstream geneMtpn, LOC100039312, LOC100039327
Downstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261E09.bB6Ng01-261E09.g
ACCGA065985GA065986
length1,2111,047
definitionB6Ng01-261E09.b B6Ng01-261E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,302,901 - 36,304,117)(36,465,847 - 36,466,881)
sequence
gaattcacatagtacataaaggaggcaagcttaggttgtcacttatgtaa
tgtgttatcaatgaaatcaaaagaaaatttgtcacatgaaatttttctca
cccatccaattagtaagaaccgggcaaattttactttatatctaggacaa
ctaatgtttactactgaacattattgagattactaaataaacatcatatc
cattctgaactccttaggagactacaggaagaattgagtgacctttagtt
attccccacacctcaaaaaagaaaagggaatattttaggtttcaagaaat
tcagaaaacagagaagcatcccattcccccttgctgtgttgcatgccaag
caggactttataatgcaaaccaacagagttaacagcccttctctatacat
tccctcatctctcaattcccagggtatgtgttttccatgcaaacagcact
gtttgaagcttttctttttcatctgtgtaactgcagtcttgctatctctc
cagaactcatttcattgtctttctttttgcaaatctaacgatgatgttcc
atctgctgtcactgaactggaatgtccccaaaatgtaaagcaagtcccac
agggtattgccttgaagaatcatttgcctgataaacagcaaatcacaaaa
tgggttttagctcctttcaattacaatgagggaaaatagatgaaagaaat
aaaaaggaaacagtctctgaaggcttatactttaagcaggtctgcgtttt
ctcaaccttcgcccatccaggaagggtcctgatgaataaggctttaaact
gccttattcatcatacctgaagttttcctgccttagagaacagtaaaaga
atttgagatctaaacagtgatgtttggatctcagtacataagatccctca
tacttctaaaaataaaccttttaaaccacttggtccatcaagccgacttg
ggtggaatttgctcacagtacatagaaatgggatcacttaataaagggta
tatattgagggcctatgccatgccagagcctagagtggtaacactgggta
aataaaggtgtactagaaatgaacacccaatttcagagagcggacaactt
taataaataactgttaaagaatattcacaagccgccaaaataacctgggg
ctggggaagcctttaaacatgaatcagagtctatgcatggattggttcta
catctgagagg

gaattcaacagcactctgaggagcatgagggctgtaggcttacgttttgc
ctgggttttctccttttggagaaagtgcaactcctttatagtaaaatgca
tgggcctagagctacagcatgagacatgtattacactgagaaccccgatc
aaacatccaatcagaggcaaccccgtgaaacaaaagagaaaatggaccac
gggccacagagctgcctgtgatttcacagctgtatctgtgtctttctctc
tgtttttaagaagcaggaactgtgtagctggctttttaaattttgttctt
gtggtgttcattcccccagcccctgaagttggcaggctgctagtttaata
gcactaaattagttaattcattgctgtgaattaaaaatgcgaatcaaatt
tgcagaggaattgaggcttgttataaccctgatagaaaattctggaatga
aagctgctgctctcaagaagctgagcaaaaccaaacagtgtcccctatag
ggagaattttccagggtgtatatgccttccattgggagatgaggagagca
tgtgccaccatgttactttgggttgtagctgaaggacacacctgatggga
ggtaagagggagctgcatttgtgagtagtgtgaaatgtttatgttgccct
ggaggaccatggcaactaggatgagaataaatgggatcaggagttgtgcc
cagagtaagtaattcacacacaagtgaaattccctccgagtatatggaaa
attcaggcagcacagtttgaaaataactggatagagattaagacactcag
tttacttaggagtatatttattatgggtctgtctcagtgtacatggccca
tgaagggaaaaaaaaaaaaaaaaaacctttaccatcaatgtaatacattg
ctcttttctagaataaaaaaaaaaaaaggtgcttttctatgggaaaatgc
aaatgagtagattttggttttataggcatggccttatgggttactattca
tttgggaggcacagaaagtgtacagcagatagggtatcatcctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36302901_36304117
seq2: B6Ng01-261E09.b_45_1255

seq1  GAATTCACATAGTACATAAAGGAGGCAAGCTTAGGTTGTCACTTATGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAGTACATAAAGGAGGCAAGCTTAGGTTGTCACTTATGTAA  50

seq1  TGTGTTATCAATGAAATCAAAAGAAAATTTGTCACATGAAATTTTTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATCAATGAAATCAAAAGAAAATTTGTCACATGAAATTTTTCTCA  100

seq1  CCCATCCAATTAGTAAGAACCGGGCAAATTTTACTTTATATCTAGGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCAATTAGTAAGAACCGGGCAAATTTTACTTTATATCTAGGACAA  150

seq1  CTAATGTTTACTACTGAACATTATTGAGATTACTAAATAAACATCATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTTACTACTGAACATTATTGAGATTACTAAATAAACATCATATC  200

seq1  CATTCTGAACTCCTTAGGAGACTACAGGAAGAATTGAGTGACCTTTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGAACTCCTTAGGAGACTACAGGAAGAATTGAGTGACCTTTAGTT  250

seq1  ATTCCCCACACCTCAAAAAAGAAAAGGGAATATTTTAGGTTTCAAGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCACACCTCAAAAAAGAAAAGGGAATATTTTAGGTTTCAAGAAAT  300

seq1  TCAGAAAACAGAGAAGCATCCCATTCCCCCTTGCTGTGTTGCATGCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAACAGAGAAGCATCCCATTCCCCCTTGCTGTGTTGCATGCCAAG  350

seq1  CAGGACTTTATAATGCAAACCAACAGAGTTAACAGCCCTTCTCTATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTTATAATGCAAACCAACAGAGTTAACAGCCCTTCTCTATACAT  400

seq1  TCCCTCATCTCTCAATTCCCAGGGTATGTGTTTTCCATGCAAACAGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATCTCTCAATTCCCAGGGTATGTGTTTTCCATGCAAACAGCACT  450

seq1  GTTTGAAGCTTTTCTTTTTCATCTGTGTAACTGCAGTCTTGCTATCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGCTTTTCTTTTTCATCTGTGTAACTGCAGTCTTGCTATCTCTC  500

seq1  CAGAACTCATTTCATTGTCTTTCTTTTTGCAAATCTAACGATGATGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCATTTCATTGTCTTTCTTTTTGCAAATCTAACGATGATGTTCC  550

seq1  ATCTGCTGTCACTGAACTGGAATGTCCCCAAAATGTAAAGCAAGTCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGTCACTGAACTGGAATGTCCCCAAAATGTAAAGCAAGTCCCAC  600

seq1  AGGGTATTGCCTTGAAGAATCATTTGCCTGATAAACAGCAAATCACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATTGCCTTGAAGAATCATTTGCCTGATAAACAGCAAATCACAAAA  650

seq1  TGGGTTTTAGCTCCTTTCAATTACAATGAGGGAAAATAGATGAAAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTAGCTCCTTTCAATTACAATGAGGGAAAATAGATGAAAGAAAT  700

seq1  AAAAAGGAAACAGTCTCTGAAGGCTTATACTTTAAGCAGGTCTGCGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAACAGTCTCTGAAGGCTTATACTTTAAGCAGGTCTGCGTTTT  750

seq1  CTCAACCTTCGCCCATCCAGGAAGGGTCCTGATGAATAAGGCTTTAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCTTCGCCCATCCAGGAAGGGTCCTGATGAATAAGGCTTTAAACT  800

seq1  GCCTTATTCATCATACCTGAAGTTTTCCTGCCTTAGAGAACAGTAAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATTCATCATACCTGAAGTTTTCCTGCCTTAGAGAACAGTAAAAGA  850

seq1  ATTTGAGATCTAAACAGTGATGTTTGGATCTCAGTACATAAGATCCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGATCTAAACAGTGATGTTTGGATCTCAGTACATAAGATCCCTCA  900

seq1  TACTTCTAAAAATAAACCTTTTAAACCACTTGGTCCATCAAGCCGACTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTAAAAATAAACCTTTTAAACCACTTGGTCCATCAAGCCGACTTG  950

seq1  GGTGGAATTTGCTCACAGTACATAAGAAATGGGATCACTTAATAAAGGGT  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGTGGAATTTGCTCACAGTACAT-AGAAATGGGATCACTTAATAAAGGGT  999

seq1  ATATATTGAGGGCCTATGCCATGCCAGAGCCTAGAGTGGTAAACACTGGG  1050
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATATTGAGGGCCTATGCCATGCCAGAGCCTAGAGTGGT-AACACTGGG  1048

seq1  TAAATAAAGGTGTAACTAGAAATGAACAACCCAATTTCAGAAGAGCAGAC  1100
      ||||||||||||| ||||||||||||| |||||||||||| ||||| |||
seq2  TAAATAAAGGTGT-ACTAGAAATGAAC-ACCCAATTTCAG-AGAGCGGAC  1095

seq1  AAACTTTAATAAATAACTG-TAAAGAATAATTCAC-AGCCGCAAAAATAA  1148
       |||||||||||||||||| |||||||| |||||| |||||| |||||||
seq2  -AACTTTAATAAATAACTGTTAAAGAAT-ATTCACAAGCCGCCAAAATAA  1143

seq1  -CTGGGGCT-GGGAAGCTTTAAACCATGGTATCCAAGAGTCTATGCATCA  1196
       |||||||| ||||||| || || ||| | |||  |||||||||||||  
seq2  CCTGGGGCTGGGGAAGCCTTTAAACAT-GAATC--AGAGTCTATGCAT--  1188

seq1  GAAATTTGTTCTA---CTGAGAGG  1217
         ||| ||||||   ||||||||
seq2  -GGATTGGTTCTACATCTGAGAGG  1211


seq1: chr6_36465847_36466881
seq2: B6Ng01-261E09.g_67_1113 (reverse)

seq1  AGAGA-GATGATA-CCTATCTGCTGTACA-TTTCTGTGCCT--CAAATG-  44
      ||||| ||||||| ||||||||||||||| |||||||||||  |||||| 
seq2  AGAGAGGATGATACCCTATCTGCTGTACACTTTCTGTGCCTCCCAAATGA  50

seq1  ATAGTAACCATTAAAGCCATGCCTATAAAA-CAAAATCTACTCATTTGCA  93
      |||||||||  ||| ||||||||||||||| |||||||||||||||||||
seq2  ATAGTAACCCATAAGGCCATGCCTATAAAACCAAAATCTACTCATTTGCA  100

seq1  TTTT-CCATAGAAAAGCAC--TTTTTTTTTTTTATTCTAG-AAAGAGCAA  139
      |||| ||||||||||||||  ||||||||||||||||||| |||||||||
seq2  TTTTCCCATAGAAAAGCACCTTTTTTTTTTTTTATTCTAGAAAAGAGCAA  150

seq1  TGTATTACATTGATGGGTAAGGTTTTTTTTTTTTTTTTTT-CCTTCATGG  188
      ||||||||||||||||  |||||||||||||||||||||| |||||||||
seq2  TGTATTACATTGATGGTAAAGGTTTTTTTTTTTTTTTTTTCCCTTCATGG  200

seq1  GCCATGTACACTGAGACAGACCCATAATAAATATACTCCTAAGTAAACTG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTACACTGAGACAGACCCATAATAAATATACTCCTAAGTAAACTG  250

seq1  AGTGTCTTAATCTCTATCCAGTTATTTTCAAACTGTGCTGCCTGAATTTT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTAATCTCTATCCAGTTATTTTCAAACTGTGCTGCCTGAATTTT  300

seq1  CCATATACTCGGAGGGAATTTCACTTGTGTGTGAATTACTTACTCTGGGC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATACTCGGAGGGAATTTCACTTGTGTGTGAATTACTTACTCTGGGC  350

seq1  ACAACTCCTGATCCCATTTATTCTCATCCTAGTTGCCATGGTCCTCCAGG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCCTGATCCCATTTATTCTCATCCTAGTTGCCATGGTCCTCCAGG  400

seq1  GCAACATAAACATTTCACACTACTCACAAATGCAGCTCCCTCTTACCTCC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATAAACATTTCACACTACTCACAAATGCAGCTCCCTCTTACCTCC  450

seq1  CATCAGGTGTGTCCTTCAGCTACAACCCAAAGTAACATGGTGGCACATGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGTGTGTCCTTCAGCTACAACCCAAAGTAACATGGTGGCACATGC  500

seq1  TCTCCTCATCTCCCAATGGAAGGCATATACACCCTGGAAAATTCTCCCTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCATCTCCCAATGGAAGGCATATACACCCTGGAAAATTCTCCCTA  550

seq1  TAGGGGACACTGTTTGGTTTTGCTCAGCTTCTTGAGAGCAGCAGCTTTCA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGACACTGTTTGGTTTTGCTCAGCTTCTTGAGAGCAGCAGCTTTCA  600

seq1  TTCCAGAATTTTCTATCAGGGTTATAACAAGCCTCAATTCCTCTGCAAAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAATTTTCTATCAGGGTTATAACAAGCCTCAATTCCTCTGCAAAT  650

seq1  TTGATTCGCATTTTTAATTCACAGCAATGAATTAACTAATTTAGTGCTAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCGCATTTTTAATTCACAGCAATGAATTAACTAATTTAGTGCTAT  700

seq1  TAAACTAGCAGCCTGCCAACTTCAGGGGCTGGGGGAATGAACACCACAAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGCAGCCTGCCAACTTCAGGGGCTGGGGGAATGAACACCACAAG  750

seq1  AACAAAATTTAAAAAGCCAGCTACACAGTTCCTGCTTCTTAAAAACAGAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATTTAAAAAGCCAGCTACACAGTTCCTGCTTCTTAAAAACAGAG  800

seq1  AGAAAGACACAGATACAGCTGTGAAATCACAGGCAGCTCTGTGGCCCGTG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACACAGATACAGCTGTGAAATCACAGGCAGCTCTGTGGCCCGTG  850

seq1  GTCCATTTTCTCTTTTGTTTCACGGGGTTGCCTCTGATTGGATGTTTGAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTTCTCTTTTGTTTCACGGGGTTGCCTCTGATTGGATGTTTGAT  900

seq1  CGGGGTTCTCAGTGTAATACATGTCTCATGCTGTAGCTCTAGGCCCATGC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTTCTCAGTGTAATACATGTCTCATGCTGTAGCTCTAGGCCCATGC  950

seq1  ATTTTACTATAAAGGAGTTGCACTTTCTCCAAAAGGAGAAAACCCAGGCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTATAAAGGAGTTGCACTTTCTCCAAAAGGAGAAAACCCAGGCA  1000

seq1  AAACGTAAGCCTACAGCCCTCATGCTCCTCAGAGTGCTGTTGAATTC  1035
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTAAGCCTACAGCCCTCATGCTCCTCAGAGTGCTGTTGAATTC  1047


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