BAC Information

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BAC

Clone NameB6Ng01-261G24
Chromosome2 (Build37)6 (Build37)
Map Location 68,297,552 - 68,298,25885,609,018 - 85,609,596
singlet/doubletsingletsinglet
Overlap geneStk39
Upstream geneCmya3, LOC621171, LOC227995, B3galt1
Downstream geneLOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261G24.bB6Ng01-261G24.g
ACCGA066107GA066108
length717849
definitionB6Ng01-261G24.b B6Ng01-261G24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,297,552 - 68,298,258)(85,609,018 - 85,609,596)
sequence
gaattcaaggacatcgtgcactacacagatagtggaaaggtgccttggct
acatgagaccctgctagaagaataggacatgaagctttctgataaaatcc
cgcatctttgatgacagcagcaggaagatgcccctattaaagcacctcac
cctctcttgaagcctggagtgtcgctttttaaacaagcagtgggtatgtg
ctttagcggaagtaaaggatctagccccatcctgctgtctgccccaaaca
cccctcttcttaggctcatgctaatgaccacagttggaagcctcacagaa
cacttgacccatttcagtctccacactacacaggaaatgtttccattaga
gttcttacttaaggccaggcactaggtttgactatccacaaacttgaaag
ggcattgctaagaaaaaagaaaggaaggaaaggaaaggaaaggaaaggaa
aggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaa
aggaaaggaaaggaaaatagagaaaagcattcactgtttctccagtcccg
gtcacttggagggacacataggggggacacacacactatttctaaaaggc
ctcacattgcaccctcatctctctacactgacatgaatcctttctcctca
caaggctgccagccccaaacaggagatagcaagcctgatatatatatgta
tgtgtgtgtgtgtgtgt
gaattctgtactaaacccatttttttttgtttccacttgattacaataat
ttgactatttcttgccatttaatcctcttgggtgaatttgcttccttttg
ttctagagcttctaggtatgctgtcaggttgctagtgtgtgctctctcta
gtttctttttgacagcactgagagctatgagttttcctcttaagaatgct
ttcattgtgacccataagtttgggtatgttgtggtttcattttcattaaa
ctctaaaactctaatctctttatttcttccttagccaagttaccattgag
tagagtgttgttcagcttccctgtgaatgttggctttctatttatgttgt
tattgaagatcagccttaatctgtggtgatctgataggatgcatgggaca
atttcaatatttttgtatctgttgaggcctgttttgtgaccaattatatg
gtcaattttggagaagttaccatgaggtgctaagaagaaggtatatcctt
ttgttttaggataaaatgttctgtcgatatgttaaatccatttgtttcat
aatgtttagtttctgtttccaggatctatccattgatgagagtggggtgt
tgaagtcacccactattattgtgtgaggtacaatgtgtgctttgagcttt
attaaagtttccttaatgaatgtggatgcccttggatgtggagcatagat
attcagaatttgagagttcctcttggaagattttacctttgatgagtatg
aagtacccctccttgtttttgatgactttgggttggaaagttgatttact
cgatattagaatgggctactccagcctgtttctttggaccatttgcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_68297552_68298258
seq2: B6Ng01-261G24.b_46_762

seq1  GAATTCAAGGACATCGTGCACTACACAGATAGTGGAAAGGTGCCTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACATCGTGCACTACACAGATAGTGGAAAGGTGCCTTGGCT  50

seq1  ACATGAGACCCTGCTAGAAGAATAGGACATGAAGCTTTCTGATAAAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGACCCTGCTAGAAGAATAGGACATGAAGCTTTCTGATAAAATCC  100

seq1  CGCATCTTTGATGACAGCAGCAGGAAGATGCCCCTATTAAAGCACCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATCTTTGATGACAGCAGCAGGAAGATGCCCCTATTAAAGCACCTCAC  150

seq1  CCTCTCTTGAAGCCTGGAGTGTCGCTTTTTAAACAAGCAGTGGGTATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTGAAGCCTGGAGTGTCGCTTTTTAAACAAGCAGTGGGTATGTG  200

seq1  CTTTAGCGGAAGTAAAGGATCTAGCCCCATCCTGCTGTCTGCCCCAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCGGAAGTAAAGGATCTAGCCCCATCCTGCTGTCTGCCCCAAACA  250

seq1  CCCCTCTTCTTAGGCTCATGCTAATGACCACAGTTGGAAGCCTCACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTCTTAGGCTCATGCTAATGACCACAGTTGGAAGCCTCACAGAA  300

seq1  CACTTGACCCATTTCAGTCTCCACACTACACAGGAAATGTTTCCATTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGACCCATTTCAGTCTCCACACTACACAGGAAATGTTTCCATTAGA  350

seq1  GTTCTTACTTAAGGCCAGGCACTAGGTTTGACTATCCACAAACTTGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTACTTAAGGCCAGGCACTAGGTTTGACTATCCACAAACTTGAAAG  400

seq1  GGCATTGCTAAGAAAAAAGAAAGG----------AAGGAAAGGAAAGGAA  440
      ||||||||||||||||||||||||          ||||||||||||||||
seq2  GGCATTGCTAAGAAAAAAGAAAGGAAGGAAAGGAAAGGAAAGGAAAGGAA  450

seq1  AGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAA  500

seq1  AGGAAAGGAAAGGAAAATAGAGAAAAGCATTCACTGTTTCTCCAGTCCCG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGAAAGGAAAATAGAGAAAAGCATTCACTGTTTCTCCAGTCCCG  550

seq1  GTCACTTGGAGGGACACATAGGGGGGACACACACACTATTTCTAAAAGGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTGGAGGGACACATAGGGGGGACACACACACTATTTCTAAAAGGC  600

seq1  CTCACATTGCACCCTCATCTCTCTACACTGACATGAATCCTTTCTCCTCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTGCACCCTCATCTCTCTACACTGACATGAATCCTTTCTCCTCA  650

seq1  CAAGGCTGCCAGCCCCAAACAGGAGATAGCAAGCCTGATATATATATGTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGCCAGCCCCAAACAGGAGATAGCAAGCCTGATATATATATGTA  700

seq1  TGTGTGTGTGTGTGTGT  707
      |||||||||||||||||
seq2  TGTGTGTGTGTGTGTGT  717

seq1: chr6_85609018_85609596
seq2: B6Ng01-261G24.g_367_916 (reverse)

seq1  CAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAG-CCATTCTAATATCTA  49
      |||||||||||||  |||||||| |||||||||| ||||||||||||| |
seq2  CAAGCAAATGGTCCAAAGAAACAGGCTGGAGTAGCCCATTCTAATATCGA  50

seq1  ATAAAATCAAC-TTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCA  98
       | |||||||| ||||||||||||||||||||||   ||||||||||| |
seq2  GT-AAATCAACTTTCCAACCCAAAGTCATCAAAA---ACAAGGAGGGGTA  96

seq1  CTTCATACTCATCAAAGGTAAAATCCTTTAAGAGGAACTATC-AATTCTG  147
      ||||||||||||||||||||||||| |  |||||||||| || |||||||
seq2  CTTCATACTCATCAAAGGTAAAATCTTCCAAGAGGAACTCTCAAATTCTG  146

seq1  AATATCTATGCTCCAAATACAAGGGCAGCTACAATCATTAAAGAAACTTT  197
      ||||||||||||||| || |||||||| | ||| ||||||| ||||||||
seq2  AATATCTATGCTCCACATCCAAGGGCATCCACATTCATTAAGGAAACTTT  196

seq1  AGTAAAGCTCAAAGCACACATTGCACCTCACACAATAATAGTAGGAGACT  247
      | ||||||||||||||||||||| |||||||||||||||||| || ||||
seq2  AATAAAGCTCAAAGCACACATTGTACCTCACACAATAATAGTGGGTGACT  246

seq1  TCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAAC  297
      ||||||| ||||| ||| ||||||| ||||| ||||||||||||||||||
seq2  TCAACACCCCACTCTCATCAATGGATAGATCCTGGAAACAGAAACTAAAC  296

seq1  AGGGACACAGTGAAACTAACAGAAGTGATGAAACAAATGGACTTAACAGA  347
      |                        | |||||||||||||| |||||  |
seq2  A------------------------TTATGAAACAAATGGATTTAAC--A  320

seq1  TATCTACAGAACATTTTATCCTAAAAC-AAAGGATATACCTTCTTCTCAG  396
      |||| |||||||||||||||||||||| ||||||||||||||||||| ||
seq2  TATCGACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTTAG  370

seq1  CACCTCATGGTACCTTCTCTAAAATTGACCACATAATTGGTCACAAAACA  446
      |||||||||||| |||||| ||||||||||| ||||||||||||||||||
seq2  CACCTCATGGTAACTTCTCCAAAATTGACCATATAATTGGTCACAAAACA  420

seq1  AGCCTCAACATATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGA  496
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGA  470

seq1  TCACCATGGACTAAGGCTGATCTTCAATAACAAAATAAATAATAGAAAGC  546
      ||||||  || |||||||||||||||||||||| |||   ||||||||||
seq2  TCACCACAGATTAAGGCTGATCTTCAATAACAACATA---AATAGAAAGC  517

seq1  CAACATTCATGTGGAAACTGAACAACACTCTTC  579
      |||||||||   |||| |||||||||||||| |
seq2  CAACATTCACAGGGAAGCTGAACAACACTCTAC  550