BAC Information

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BAC

Clone NameB6Ng01-261H24
Chromosome6 (Build37)
Map Location 96,193,718 - 96,380,517
singlet/doubletdoublet
Overlap geneC630007B19Rik
Upstream geneLOC435912, Suclg2, LOC665886, LOC545867, LOC100043685, 1700123L14Rik
Downstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261H24.bB6Ng01-261H24.g
ACCGA066155GA066156
length1,161315
definitionB6Ng01-261H24.b B6Ng01-261H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,379,355 - 96,380,517)(96,193,718 - 96,194,032)
sequence
gaattcttttatttaattctttcttcccaatcagccatctcctttaatat
tccacataaagttaatgacatcccaactgataggtgcttcgtttgacttt
tctttctttctttcttttttctatcttacaagtaaccaacgaagacgaag
atgcatatttgaaatatcccagcttgatctatattactaccagttatgga
gcaaaacagtaatgacacagcttagatctgtgaatatttaattacaaatg
gggaggttatccaatttttatcaaatatactttctgggactgaattgtac
acatagcaccatctcctcaaactgataaaatatagtcaaagataataaat
gcatatgacaatgcgtttatcaaaacactttagaaacatttattcagtaa
ttatgttgtcttctttgcttcagatattagatatctggaccaagatgagc
ctaaaggacaaagttcaagtactcatatacttcaagtactccttctccag
cacatacgtctattgagactggctatgtatgtgtcagacactggaatcga
cagggaatcgctaggacctaaaatggctttgggtttgtacagaccaatca
ataaatacccgaagaaaataagactctaaggaatgcattcaaactgcctc
ggagaagccacaatattttcaacattgctttttattgtctggaaggaaat
attaaagaaaaagcagagtgaaaaagcccagaccactcagtcagactctt
aacaggcaggacattaagaaaaatctaaacagcattagaagcgcattcaa
tgtaagattgatatctacagcaacatgaaacagtactgggtgtggattgt
ttgtttctgtttcctttccagctgaagataaatttggagatacttaaggc
aagtgaatttgccaagccattgttttattgaaccactctggtcatttctc
aggaagaagcttcgtgctggtgggggtgaccctcctttcgtgccctccag
ggtactgtcagcttgtcaacgtcacgttgcaggcatggcatgcatattta
aactaactcatttcacaggagcattaggacagttatgcaatgaatagtct
tcactcgccttagataagtggaattccctcatttattacaactgggaagg
tagaacctttt

ttcctcattgagatagctgtttaggtatctcatctgtgcttaataaggat
gcatagacatcttccttcttattccttaaggtagttggagtccactttcg
gttatctgtcaccaaaagagatgtgttcagtaaatgtgattccaactcag
gtattttctacctgggtcactgtgccctttgccgtgatgtaactctacag
agtccctgtagaacctgaggtttccaaggttctgaaataataaccagatc
ttactgacatattatggagagagagagagagagagagagagagagtgaga
gtgagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_96379355_96380517
seq2: B6Ng01-261H24.b_41_1201 (reverse)

seq1  AAAAGTTTCTAACCTTTCCAGTTGTAATTAAATGAGGGA--TTCACTAAT  48
      ||||| |||| ||||| |||||||||| |||||||||||  | |||| ||
seq2  AAAAGGTTCT-ACCTTCCCAGTTGTAA-TAAATGAGGGAATTCCACTTAT  48

seq1  CTAAGGCGAGTGAAGACTATTTCATTGCATAACTGTCCTAATGCTCCTGT  98
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTAAGGCGAGTGAAGACTA-TTCATTGCATAACTGTCCTAATGCTCCTGT  97

seq1  GGAAATGGGTTAGTTTAAATATGCATGCCATGGCCTGCAACGTGACGTTG  148
       |||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  -GAAATGAGTTAGTTTAAATATGCATGCCAT-GCCTGCAACGTGACGTTG  145

seq1  ACAAGCTGACAGTACCCTGGAGGGCACGGAAGGAGGGTCA-CCCCACCAG  197
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  ACAAGCTGACAGTACCCTGGAGGGCACGAAAGGAGGGTCACCCCCACCAG  195

seq1  CACGAAGCTCTTCCCTGAGAAATGACCAGAGTGGTTCAATAAAACAATGG  247
      |||||||||  | |||||||||||||||||||||||||||||||||||||
seq2  CACGAAGCTTCTTCCTGAGAAATGACCAGAGTGGTTCAATAAAACAATGG  245

seq1  CTTGGCAAATTCACTTGCCTTAAGTATCTCCAAATTTATCTTCAGCTGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAAATTCACTTGCCTTAAGTATCTCCAAATTTATCTTCAGCTGGA  295

seq1  AAGGAAACAGAAACAAACAATCCACACCCAGTACTGTTTCATGTTGCTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAGAAACAAACAATCCACACCCAGTACTGTTTCATGTTGCTGT  345

seq1  AGATATCAATCTTACATTGAATGCGCTTCTAATGCTGTTTAGATTTTTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCAATCTTACATTGAATGCGCTTCTAATGCTGTTTAGATTTTTCT  395

seq1  TAATGTCCTGCCTGTTAAGAGTCTGACTGAGTGGTCTGGGCTTTTTCACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCCTGCCTGTTAAGAGTCTGACTGAGTGGTCTGGGCTTTTTCACT  445

seq1  CTGCTTTTTCTTTAATATTTCCTTCCAGACAATAAAAAGCAATGTTGAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTTCTTTAATATTTCCTTCCAGACAATAAAAAGCAATGTTGAAA  495

seq1  ATATTGTGGCTTCTCCGAGGCAGTTTGAATGCATTCCTTAGAGTCTTATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGGCTTCTCCGAGGCAGTTTGAATGCATTCCTTAGAGTCTTATT  545

seq1  TTCTTCGGGTATTTATTGATTGGTCTGTACAAACCCAAAGCCATTTTAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCGGGTATTTATTGATTGGTCTGTACAAACCCAAAGCCATTTTAGG  595

seq1  TCCTAGCGATTCCCTGTCGATTCCAGTGTCTGACACATACATAGCCAGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCGATTCCCTGTCGATTCCAGTGTCTGACACATACATAGCCAGTC  645

seq1  TCAATAGACGTATGTGCTGGAGAAGGAGTACTTGAAGTATATGAGTACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGACGTATGTGCTGGAGAAGGAGTACTTGAAGTATATGAGTACTT  695

seq1  GAACTTTGTCCTTTAGGCTCATCTTGGTCCAGATATCTAATATCTGAAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGTCCTTTAGGCTCATCTTGGTCCAGATATCTAATATCTGAAGC  745

seq1  AAAGAAGACAACATAATTACTGAATAAATGTTTCTAAAGTGTTTTGATAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGACAACATAATTACTGAATAAATGTTTCTAAAGTGTTTTGATAA  795

seq1  ACGCATTGTCATATGCATTTATTATCTTTGACTATATTTTATCAGTTTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATTGTCATATGCATTTATTATCTTTGACTATATTTTATCAGTTTGA  845

seq1  GGAGATGGTGCTATGTGTACAATTCAGTCCCAGAAAGTATATTTGATAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGTGCTATGTGTACAATTCAGTCCCAGAAAGTATATTTGATAAA  895

seq1  AATTGGATAACCTCCCCATTTGTAATTAAATATTCACAGATCTAAGCTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATAACCTCCCCATTTGTAATTAAATATTCACAGATCTAAGCTGT  945

seq1  GTCATTACTGTTTTGCTCCATAACTGGTAGTAATATAGATCAAGCTGGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTACTGTTTTGCTCCATAACTGGTAGTAATATAGATCAAGCTGGGA  995

seq1  TATTTCAAATATGCATCTTCGTCTTCGTTGGTTACTTGTAAGATAGAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAATATGCATCTTCGTCTTCGTTGGTTACTTGTAAGATAGAAAA  1045

seq1  AAGAAAGAAAGAAAGAAAAGTCAAACGAAGCACCTATCAGTTGGGATGTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAAGTCAAACGAAGCACCTATCAGTTGGGATGTC  1095

seq1  ATTAACTTTATGTGGAATATTAAAGGAGATGGCTGATTGGGAAGAAAGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTTTATGTGGAATATTAAAGGAGATGGCTGATTGGGAAGAAAGAA  1145

seq1  TTAAATAAAAGAATTC  1163
      ||||||||||||||||
seq2  TTAAATAAAAGAATTC  1161


seq1: chr6_96193718_96194032
seq2: B6Ng01-261H24.g_69_383

seq1  TTCCTCATTGAGATAGCTGTTTAGGTATCTCATCTGTGCTTAATAAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATTGAGATAGCTGTTTAGGTATCTCATCTGTGCTTAATAAGGAT  50

seq1  GCATAGACATCTTCCTTCTTATTCCTTAAGGTAGTTGGAGTCCACTTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGACATCTTCCTTCTTATTCCTTAAGGTAGTTGGAGTCCACTTTCG  100

seq1  GTTATCTGTCACCAAAAGAGATGTGTTCAGTAAATGTGATTCCAACTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTGTCACCAAAAGAGATGTGTTCAGTAAATGTGATTCCAACTCAG  150

seq1  GTATTTTCTACCTGGGTCACTGTGCCCTTTGCCGTGATGTAACTCTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCTACCTGGGTCACTGTGCCCTTTGCCGTGATGTAACTCTACAG  200

seq1  AGTCCCTGTAGAACCTGAGGTTTCCAAGGTTCTGAAATAATAACCAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGTAGAACCTGAGGTTTCCAAGGTTCTGAAATAATAACCAGATC  250

seq1  TTACTGACATATTATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGACATATTATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGA  300

seq1  GTGAGAGAGAGAGAG  315
      |||||||||||||||
seq2  GTGAGAGAGAGAGAG  315


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