BAC Information

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BAC

Clone NameB6Ng01-267J13
Chromosome6 (Build37)
Map Location 38,682,041 - 38,827,999
singlet/doubletdoublet
Overlap geneHipk2
Upstream geneLOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180
Downstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267J13.bB6Ng01-267J13.g
ACCGA070677GA070678
length587418
definitionB6Ng01-267J13.b B6Ng01-267J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,682,041 - 38,682,632)(38,827,584 - 38,827,999)
sequence
atttgtttttctccttagccttcttcacgcaaagagaggcagaagttagc
aatggcttcagactgaagctgtctagaaggagttgtacctttagaggttg
taaggactaagggttaaaggagcaggtgggctctgagtaaatgttcacat
atgtttggccacatacactttaatatttgggggggggtgcttgtgggagt
agggaactacttttaacttgttagaaactaaaaggaaagtgtcccatgta
aaagaacacaaatgtaaagagaatttcaagtggagttaacatcaaatttc
ataaaaatgtcaagccctctttttctttttatttttttgtggtgctgcag
aaatcaaacaaacccagagcctttcgtacactaggcacttccactactga
gctatgtctctagtcctactttgctttttatacttagattttgtgctgga
ttttggtttaagacaacacatttatttgaaaattattaccaattcctatg
gcataccttttttagattttgagctgcatatttaactgtgtgtgcatttt
catcagtccctgtagtgcctcctggaagtatggaggg
gaattctttaaccattttaagacaccacttgtgggaatgtgacattttgg
gcaaaggccttctatgagcaaggttggcagaggaccacaggtaaaccagt
cgggctggagaggcagtgatttgttgaaatcatgtcctaggagaggtaag
ttggaacctgtctgtcttgactaaaagccaaggaactaagagacttagca
ctagatgaaggtgagtctttagaagatagaagtaggagcatggagtggcc
agaaccactccatttgagagagcagcagtatttaggagcaaccggccatg
aacaaatctagggaaaccagttaaggattacaaggggatagaaagggaca
agtgaagattgtgaaggaagatcgtaggggcctaaatatctaaagttaag
gtccaatactttgtatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38682041_38682632
seq2: B6Ng01-267J13.b_47_639

seq1  GAATTCATTTGTTTTTCTCCTTAGCCTTCTTCACGCAAAGAGAGGCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTTTTTCTCCTTAGCCTTCTTCACGCAAAGAGAGGCAGAA  50

seq1  GTTAGCAATGGCTTCAGACTGAAGCTGTCTAGAAGGAGTTGTACCTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAATGGCTTCAGACTGAAGCTGTCTAGAAGGAGTTGTACCTTTAG  100

seq1  AGGTTGTAAGGACTAAGGGTTAAAGGAGCAGGTGGGCTCTGAGTAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTAAGGACTAAGGGTTAAAGGAGCAGGTGGGCTCTGAGTAAATGT  150

seq1  TCACATATGTTTGGCCACATACACTTTAATATTTGGGGGGGGGTGCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATGTTTGGCCACATACACTTTAATATTTGGGGGGGGGTGCTTGT  200

seq1  GGGAGTAGGGAACTACTTTTAACTTGTTAGAAACTAAAAGGAAAGTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTAGGGAACTACTTTTAACTTGTTAGAAACTAAAAGGAAAGTGTCC  250

seq1  CATGTAAAAGAACACAAATGTAAAGAGAATTTCAAGTGGAGTTAACATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAAAGAACACAAATGTAAAGAGAATTTCAAGTGGAGTTAACATCA  300

seq1  AATTTCATAAAAATGTCAAGCCCTCTTTTTCTTTTTATTTTTTTGTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATAAAAATGTCAAGCCCTCTTTTTCTTTTTATTTTTTTGTGGTG  350

seq1  CTGCAGAAATCAAACAAACCCAGAGCCTTTCGTACACTAGGCACTTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAAATCAAACAAACCCAGAGCCTTTCGTACACTAGGCACTTCCAC  400

seq1  TACTGAGCTATGTCTCTAGTCCTACTTTGCTTTTTATACTTAGATTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCTATGTCTCTAGTCCTACTTTGCTTTTTATACTTAGATTTTGT  450

seq1  GCTGGATTTTGGTTTAAGACAACACATTTATTTGAAAATTATTACCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTTTGGTTTAAGACAACACATTTATTTGAAAATTATTACCAATT  500

seq1  CCTATGGCATA-CTTTTTTAGATTTTGAGCTGCATATTTAACTGTGTGTG  549
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGCATACCTTTTTTAGATTTTGAGCTGCATATTTAACTGTGTGTG  550

seq1  CATTTTCAGCAGTCCCTGTAGTGCCTCCTGGAAGTATGGTGGG  592
      |||||||| |||||||||||||||||||||||||||||| |||
seq2  CATTTTCATCAGTCCCTGTAGTGCCTCCTGGAAGTATGGAGGG  593

seq1: chr6_38827584_38827999
seq2: B6Ng01-267J13.g_72_489 (reverse)

seq1  TGATACAAAGTATTGGACCTTAACTTTAGATCTTTAGGCCCCTACGATCT  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGATACAAAGTATTGGACCTTAACTTTAGATATTTAGGCCCCTACGATCT  50

seq1  TCCTTCACACTCTTCACTTGTCCCTTTCTATCCCCTTGTAATCCTTAACT  100
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACAATCTTCACTTGTCCCTTTCTATCCCCTTGTAATCCTTAACT  100

seq1  GGTTTCCCTAGATTTGTTCATGGCCGGTTGCTCCTAAATACTGCTGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCCTAGATTTGTTCATGGCCGGTTGCTCCTAAATACTGCTGCTCT  150

seq1  CTCAAATGGAGTGGTTCTGGCCACTCCATGCTCCTACTTCTATCTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATGGAGTGGTTCTGGCCACTCCATGCTCCTACTTCTATCTTCTAA  200

seq1  AGACTCACCTTCATCTAGTGCTAAGTCTCTTAGTTCCTTGGCTTTTAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCACCTTCATCTAGTGCTAAGTCTCTTAGTTCCTTGGCTTTTAGTC  250

seq1  AAGACAGACAGGTTCCAACTTACCTCTCCTAGGACATGATTTCAACAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGACAGGTTCCAACTTACCTCTCCTAGGACATGATTTCAACAAAT  300

seq1  CACTGCCTCTCCAGCCCGACTGGTTTACCTGTGGTCCTCTGCCAACCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTCTCCAGCCCGACTGGTTTACCTGTGGTCCTCTGCCAACCTTG  350

seq1  CTCAT-CTATGCCTTTGCCCAAAATGTCACATTCCCACAAGTGGTGTCTT  399
      |||||   | ||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGAAGGCCTTTGCCCAAAATGTCACATTCCCACAAGTGGTGTCTT  400

seq1  -CTCTCTTTAAAGAATTC  416
          |  |||||||||||
seq2  AAAATGGTTAAAGAATTC  418