BAC Information

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BAC

Clone NameB6Ng01-267K19
Chromosome6 (Build37)
Map Location 45,803,185 - 45,804,340
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267K19.bB6Ng01-267K19.g
ACCGA070733GA070734
length1,1561,206
definitionB6Ng01-267K19.b B6Ng01-267K19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttccacagagatgatgctttcatgaataagagaacctaggaag
atcttactagacacaataaaataccagcctgcatggtcatcaaaggttca
cctgtgtaaaatatcaggtaccagaagtctgacttgggattcggattcta
atcttgagaacatactttcaaaaatgatttaaaacaggaattatttattt
agtcctcatatataaaataccatgtttactttttacaaacgtatctatgt
tgcaatagatgtctaattaaacttaaaagctgctaattcattaagtatgt
attaaagaatgaaagcacttgttaatctttaaagacttctgaatgaatgt
aaaataagtaaattttcaaatagccctaggttgagtaggaaaataattaa
ggaaaaaacacaaaacaaacaaacaaacaaaaaccagttaattgactgaa
ccaaaagaaaaaggagtataagaagtataataataagggataaaagcatc
actcccaaaattctggtacttgtcctaagaaacatttacatgagatgcac
accccatagtcctgaaagtcttactgcttttctacattcagggaaaccca
gaaagtttatctatcccaacttattgatttgcatgtcattagcaaaatgt
gtagacctccttgttcttctgccctccaggatatctggctgagtttaggt
tgtacttacaacatctggaccttaaatccctttccacaactgcttctctt
tccatttctctggcttttacgtatgccatgtgctctttctacactggcag
tcctcttcttaaaaagactaaggtcactgtctcttgtaggcagctaccct
cttcctggttgggtgccctattccagaggaatttgagtcccacaacatgg
ctgctctggcaagtgaccatatccaaagaccttctaggtctgtatgaccc
agctgaaatgtagacaggcaacttttctttcatcccactggttggaatgc
acatctttaatctcctctggctagaatacagacatgccctttagtacata
ggtttattcccaaacaatgacatctactgaagggcagaccaaatgatgaa
tcaaggaagactttacagaatgagttcggagttaggtatatgccactttc
acaaaa
gaattctcacctgcaggaataccaaatggctgagaaacacctaaagaaat
gttcaacatcattaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagacagaatggctaagatcaaaaactcaggtgacag
caaatgctggtgaggatgtggagaaagagaacatttctccattgctggtg
ggattgcaagctggaacaaccactctggaaatcagtttggcagttcctca
gaaaattggacatagtaatactggaagatccagcaataccactcctgggc
atatacccagaagatgctccaacttttaataaggacacatgctacattat
gttcataaaagccttatttaaaatagccagaagctggaaaaaacccagat
gtcaacagaggaatgaatacagaaaatgtggcacatttacacaatggagt
actaggcagctattaaaaacaatgaatttatgaaattcttagacaaatgg
atggatcaggatgatctcatcctgagtggggtagcccaatcacaaaagag
cacacatgatacgcacttactgataagtggatatcagccaagaacctcag
aatacccaagatacaatttgcaaaacacatgaaactcaagaagaagacca
aagtatgggtacttcgatccttctttaaagggggaacaaaatacacatgg
aaggagttacagaaacaaagtttggagcagagactgaagggatgaccatc
cagagactgccccacttggggatccatcccataaccaaccaccaaactca
gacactattgcagatgccaacaagattttgctgacaggaggctgatatag
ctgtctcctgagaggctctaccagtgcctggcaaatacagaattggatcc
tcacagtcatccactgggatacagcacagggtccctaatgaaggagctag
agaaagtacccagggagatgaaggggttggcagccccataggaggaacac
atatgaactacccagtacactcagagctcctgggactaaaccacaatcaa
agaaacacatgggtgggattcatggctatagctgcatattgtagcagaga
atgccctgttgacatccagtgggaaggagagtccatggtccatgaaggtc
tatgactctaattaggggaattgccacaggctcctaggaagatgatagga
gtcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_45803185_45804340
seq2: B6Ng01-267K19.b_44_1199

seq1  GAATTCTTTCCACAGAGATGATGCTTTCATGAATAAGAGAACCTAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCACAGAGATGATGCTTTCATGAATAAGAGAACCTAGGAAG  50

seq1  ATCTTACTAGACACAATAAAATACCAGCCTGCATGGTCATCAAAGGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTAGACACAATAAAATACCAGCCTGCATGGTCATCAAAGGTTCA  100

seq1  CCTGTGTAAAATATCAGGTACCAGAAGTCTGACTTGGGATTCGGATTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTAAAATATCAGGTACCAGAAGTCTGACTTGGGATTCGGATTCTA  150

seq1  ATCTTGAGAACATACTTTCAAAAATGATTTAAAACAGGAATTATTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAGAACATACTTTCAAAAATGATTTAAAACAGGAATTATTTATTT  200

seq1  AGTCCTCATATATAAAATACCATGTTTACTTTTTACAAACGTATCTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCATATATAAAATACCATGTTTACTTTTTACAAACGTATCTATGT  250

seq1  TGCAATAGATGTCTAATTAAACTTAAAAGCTGCTAATTCATTAAGTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAGATGTCTAATTAAACTTAAAAGCTGCTAATTCATTAAGTATGT  300

seq1  ATTAAAGAATGAAAGCACTTGTTAATCTTTAAAGACTTCTGAATGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGAATGAAAGCACTTGTTAATCTTTAAAGACTTCTGAATGAATGT  350

seq1  AAAATAAGTAAATTTTCAAATAGCCCTAGGTTGAGTAGGAAAATAATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTAAATTTTCAAATAGCCCTAGGTTGAGTAGGAAAATAATTAA  400

seq1  GGAAAAAACACAAAACAAACAAACAAACAAAAACCAGTTAATTGACTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAACACAAAACAAACAAACAAACAAAAACCAGTTAATTGACTGAA  450

seq1  CCAAAAGAAAAAGGAGTATAAGAAGTATAATAATAAGGGATAAAAGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGAAAAAGGAGTATAAGAAGTATAATAATAAGGGATAAAAGCATC  500

seq1  ACTCCCAAAATTCTGGTACTTGTCCTAAGAAACATTTACATGAGATGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAAAATTCTGGTACTTGTCCTAAGAAACATTTACATGAGATGCAC  550

seq1  ACCCCATAGTCCTGAAAGTCTTACTGCTTTTCTACATTCAGGGAAACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATAGTCCTGAAAGTCTTACTGCTTTTCTACATTCAGGGAAACCCA  600

seq1  GAAAGTTTATCTATCCCAACTTATTGATTTGCATGTCATTAGCAAAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTATCTATCCCAACTTATTGATTTGCATGTCATTAGCAAAATGT  650

seq1  GTAGACCTCCTTGTTCTTCTGCCCTCCAGGATATCTGGCTGAGTTTAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCTCCTTGTTCTTCTGCCCTCCAGGATATCTGGCTGAGTTTAGGT  700

seq1  TGTACTTACAACATCTGGACCTTAAATCCCTTTCCACAACTGCTTCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTACAACATCTGGACCTTAAATCCCTTTCCACAACTGCTTCTCTT  750

seq1  TCCATTTCTCTGGCTTTTACGTATGCCATGTGCTCTTTCTACACTGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCTCTGGCTTTTACGTATGCCATGTGCTCTTTCTACACTGGCAG  800

seq1  TCCTCTTCTTAAAAAGACTAAGGTCACTGTCTCTTGTAGGCAGCTACCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTTAAAAAGACTAAGGTCACTGTCTCTTGTAGGCAGCTACCCT  850

seq1  CTTCCTGGTTGGGTGCCCTATTCCAGAGGAATTTGAGTCCCACAACATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGTTGGGTGCCCTATTCCAGAGGAATTTGAGTCCCACAACATGG  900

seq1  CTGCTCTGGCAAGTGACCATATCCAAAGACCTTCTAGGTCTGTATGACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGGCAAGTGACCATATCCAAAGACCTTCTAGGTCTGTATGACCC  950

seq1  AGCTGAAATGTAGACAGGCAACTTTTCTTTCATCCCACTGGTTGGAATGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAATGTAGACAGGCAACTTTTCTTTCATCCCACTGGTTGGAATGC  1000

seq1  ACATCTTTAATCT-CTCTGGCTAGAATACAGACATG-CCTTTAGTACATA  1048
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  ACATCTTTAATCTCCTCTGGCTAGAATACAGACATGCCCTTTAGTACATA  1050

seq1  GGTTTAATTCCAAACAATGACATCTAACTGAAGGGCAGACAAAATGATGA  1098
      |||||| | |||||||||||||||| |||||||||||||| |||||||||
seq2  GGTTTATTCCCAAACAATGACATCT-ACTGAAGGGCAGACCAAATGATGA  1099

seq1  ATCAAAGAAAGACTTTACAGAATGAG-TCGAAGTTA-GTATATGCCCAAC  1146
      ||| ||| |||||||||||||||||| ||| ||||| |||||||||  ||
seq2  ATC-AAGGAAGACTTTACAGAATGAGTTCGGAGTTAGGTATATGCC--AC  1146

seq1  TTTCACAAAA  1156
      ||||||||||
seq2  TTTCACAAAA  1156