BAC Information

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BAC

Clone NameB6Ng01-268J10
Chromosome6 (Build37)
Map Location 135,932,313 - 136,070,315
singlet/doubletdoublet
Overlap geneGrin2b
Upstream geneApold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
Downstream geneEG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268J10.bB6Ng01-268J10.g
ACCGA071407GA071408
length1,130972
definitionB6Ng01-268J10.b B6Ng01-268J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,069,188 - 136,070,315)(135,932,313 - 135,933,261)
sequence
gaattctgttttagatggaatcgagataggcgtcattccaaactcagttc
ctttcaataaacaccaaatggctgttggatgataggctgtgttctagaat
aagcataatcacaaagattcccgagaggattttagagagtagaaaaccca
ataagggaagcagttgctacagcgtttaggtttgggaaatgctaggaagg
aatcagataaatgaatttgatctttgaatctgtgtgctgggtgatccccc
accgtgcattaagcagccgtttactgctgcttagtggggtggaaaacaga
caagagacatgctgctgcagatctgacagaaattaacacaatttgctgtt
agaaagttgctcaagtgaaataaaagagggaggagtcttttcaggtgatg
ttatctaggatgctctctaggaggaggtggcatttgtgtagatatctgat
ggattaaaaagtacatgccacaaggggatccgaagccctggggaatgctt
gaagacgggagcaagtttggtgtgttcaggggctttgagaatgtctttta
gggtttttctgctgcgaacagacaccatgaccaaggcaactcttataagg
gcaacatttaattgggactggcttacaggttcagagattcagtccattat
gatcaaggcaggagcatggcagcatccaggcaggcatgatgcaggcagag
ctcagagttttacatctttatctgaaggctgctagcagaatactggcttt
caggcagctaggataagggtcttataaagcccacacataaatgacatatc
tactccaagaaggtcatactcctactccaacagaccataccttctaatac
tgccactcccagtgctgagcatatataaaacatcacagagagggtcatgt
gacaagagtgcaacaagtcagggaaacaagacagagacttggggtagggg
acctaggctgggtagaaagcttgagttttgtgctaagtggatcagctaga
agcatatttctctacttagaaaacttactaagctgttgcttagtcttgta
tggggcaaagaaatagtcagttgctatttcataggtcaggttgagagtta
gattgggggcagtaatgaatggtaagggag
gaattctttttgtgtttttacttgacgagtaactagtagacatctacaca
tgcattaatagtatacaaattatgttttgaaatatgcatatgcatatatg
catcatagaatatttgggcatatgtatgtgcacacatgtatgcacagtgt
atgcaaatgtgttgtagggtatgtatgtacatgtacacatgtgtgtacag
gaaagaggtcaacctcagatgccattattcagacagccatccagtttgac
ttttgagaaagggtttgtcactggcctggaaactgctaagtaggctagac
tgcctgagcagtgagcgctgactgcatctacatcaccagtgtgtacatca
cgagagagtgtgcatcacaggtatgtgtgcctcacaggagtgtgtacatc
acaggagtatgtgtgtgcatagcaggagtgtgtgtacatcacaggagtgt
gtgtgtgcatcacaggagtgtgtttgtgtgcatcacaggagtgtgtacat
agcaagagtgtgtgtacatcacagaagtgtatgtgtgcatcacaggagtg
tgtgtgtgcatcacaggagtgtgcagcaatgctcagctttttcacgtgga
ttctcagaattagacccaggaccttacattttcaggaaaagtattttatc
aaatgagctacggtcccaccctcaagaccaattctcatcagatggctctt
ctgttgagtttgagtctttgcagtgtgaatattaactccttcacaaatct
atggcttgaaaatacatacgttctcccattcagaatgcaatcacttcttg
ttaactgtttccttttctgggaagactgtttcagttcagtgcaacccatt
tgcccatttaaaaaattttgtgatttgtgctctgaggatcatatttaaaa
gaatctttacacccagttgtggtgtggacccctatatctcagattttggg
gaacagaggcaggatagcaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_136069188_136070315
seq2: B6Ng01-268J10.b_44_1173 (reverse)

seq1  CTCCCT--ACATTCATATCTGCCCCCAATCTACCTCTC-ACCTGGACTAT  47
      ||||||   |||||||  |||||||||||||| ||||| |||||  ||||
seq2  CTCCCTTACCATTCATTACTGCCCCCAATCTAACTCTCAACCTGACCTAT  50

seq1  GAAATAGCCACTTGGCTATTTC-TTGCCCC-TAC-AGACT-AGCAACAGC  93
      |||||||| || || ||||||| ||||||| ||| ||||| |||||||||
seq2  GAAATAGCAAC-TGACTATTTCTTTGCCCCATACAAGACTAAGCAACAGC  99

seq1  TTAGTTAGTTTTTCTAAGTAGGAGAATATGCTTCTAGGCTTGATCCCACT  143
      ||||| || ||||||||||||   |||||||||||||   |||| |||||
seq2  TTAGTAAG-TTTTCTAAGTAGAGAAATATGCTTCTAG--CTGAT-CCACT  145

seq1  TAGCACAAAACTCCAAGCTTTCTA-CCAGCCTAGGTCCCCCTACCCCAAG  192
      |||||||||||| ||||||||||| ||||||||||| |||||||||||||
seq2  TAGCACAAAACT-CAAGCTTTCTACCCAGCCTAGGT-CCCCTACCCCAAG  193

seq1  TCTCTGTCTTG-TTCCCTGACTTGTTGCACTCTTGTCACATGACCCTCTC  241
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTTGTTTCCCTGACTTGTTGCACTCTTGTCACATGACCCTCTC  243

seq1  TGTGATGTTTTATATATGCTCAGCACTGGGAGTGGCAGTATTAGAAGGTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTTTTATATATGCTCAGCACTGGGAGTGGCAGTATTAGAAGGTA  293

seq1  TGGTCTGTTGGAGTAGGAGTATGACCTTCTTGGAGTAGATATGTCATTTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTTGGAGTAGGAGTATGACCTTCTTGGAGTAGATATGTCATTTA  343

seq1  TGTGTGGGCTTTATAAGACCCTTATCCTAGCTGCCTGAAAGCCAGTATTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGCTTTATAAGACCCTTATCCTAGCTGCCTGAAAGCCAGTATTC  393

seq1  TGCTAGCAGCCTTCAGATAAAGATGTAAAACTCTGAGCTCTGCCTGCATC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCAGCCTTCAGATAAAGATGTAAAACTCTGAGCTCTGCCTGCATC  443

seq1  ATGCCTGCCTGGATGCTGCCATGCTCCTGCCTTGATCATAATGGACTGAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCCTGGATGCTGCCATGCTCCTGCCTTGATCATAATGGACTGAA  493

seq1  TCTCTGAACCTGTAAGCCAGTCCCAATTAAATGTTGCCCTTATAAGAGTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAACCTGTAAGCCAGTCCCAATTAAATGTTGCCCTTATAAGAGTT  543

seq1  GCCTTGGTCATGGTGTCTGTTCGCAGCAGAAAAACCCTAAAAGACATTCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTCATGGTGTCTGTTCGCAGCAGAAAAACCCTAAAAGACATTCT  593

seq1  CAAAGCCCCTGAACACACCAAACTTGCTCCCGTCTTCAAGCATTCCCCAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCCTGAACACACCAAACTTGCTCCCGTCTTCAAGCATTCCCCAG  643

seq1  GGCTTCGGATCCCCTTGTGGCATGTACTTTTTAATCCATCAGATATCTAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCGGATCCCCTTGTGGCATGTACTTTTTAATCCATCAGATATCTAC  693

seq1  ACAAATGCCACCTCCTCCTAGAGAGCATCCTAGATAACATCACCTGAAAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCCACCTCCTCCTAGAGAGCATCCTAGATAACATCACCTGAAAA  743

seq1  GACTCCTCCCTCTTTTATTTCACTTGAGCAACTTTCTAACAGCAAATTGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCCCTCTTTTATTTCACTTGAGCAACTTTCTAACAGCAAATTGT  793

seq1  GTTAATTTCTGTCAGATCTGCAGCAGCATGTCTCTTGTCTGTTTTCCACC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTCTGTCAGATCTGCAGCAGCATGTCTCTTGTCTGTTTTCCACC  843

seq1  CCACTAAGCAGCAGTAAACGGCTGCTTAATGCACGGTGGGGGATCACCCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGCAGCAGTAAACGGCTGCTTAATGCACGGTGGGGGATCACCCA  893

seq1  GCACACAGATTCAAAGATCAAATTCATTTATCTGATTCCTTCCTAGCATT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGATTCAAAGATCAAATTCATTTATCTGATTCCTTCCTAGCATT  943

seq1  TCCCAAACCTAAACGCTGTAGCAACTGCTTCCCTTATTGGGTTTTCTACT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACCTAAACGCTGTAGCAACTGCTTCCCTTATTGGGTTTTCTACT  993

seq1  CTCTAAAATCCTCTCGGGAATCTTTGTGATTATGCTTATTCTAGAACACA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAATCCTCTCGGGAATCTTTGTGATTATGCTTATTCTAGAACACA  1043

seq1  GCCTATCATCCAACAGCCATTTGGTGTTTATTGAAAGGAACTGAGTTTGG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCATCCAACAGCCATTTGGTGTTTATTGAAAGGAACTGAGTTTGG  1093

seq1  AATGACGCCTATCTCGATTCCATCTAAAACAGAATTC  1128
      |||||||||||||||||||||||||||||||||||||
seq2  AATGACGCCTATCTCGATTCCATCTAAAACAGAATTC  1130

seq1: chr6_135932313_135933261
seq2: B6Ng01-268J10.g_68_1012

seq1  GAATTCTTTTTGTGTTTTTACTTGACGAGTAACTAGTAGACATCTACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGTGTTTTTACTTGACGAGTAACTAGTAGACATCTACACA  50

seq1  TGCATTAATAGTATACAAATTATGTTTTGAAATATGCATATGCATATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAATAGTATACAAATTATGTTTTGAAATATGCATATGCATATATG  100

seq1  CATCATAGAATATTTGGGCATATGTATGTGCACACATGTATGCACAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAGAATATTTGGGCATATGTATGTGCACACATGTATGCACAGTGT  150

seq1  ATGCAAATGTGTTGTAGGGTATGTATGTACATGTACACATGTGTGTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGTGTTGTAGGGTATGTATGTACATGTACACATGTGTGTACAG  200

seq1  GAAAGAGGTCAACCTCAGATGCCATTATTCAGACAGCCATCCAGTTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGTCAACCTCAGATGCCATTATTCAGACAGCCATCCAGTTTGAC  250

seq1  TTTTGAGAAAGGGTTTGTCACTGGCCTGGAAACTGCTAAGTAGGCTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAAAGGGTTTGTCACTGGCCTGGAAACTGCTAAGTAGGCTAGAC  300

seq1  TGCCTGAGCAGTGAGCGCTGACTGCATCTACATCACCAGTGTGTACATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGCAGTGAGCGCTGACTGCATCTACATCACCAGTGTGTACATCA  350

seq1  CGAGAGAGTGTGCATCACAGGTATGTGTGCCTCACAGGAGTGTGTACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGAGTGTGCATCACAGGTATGTGTGCCTCACAGGAGTGTGTACATC  400

seq1  ACAGGAGTATGTGTGTGCATAGCAGGAGTGTGTGTACATCACAGGAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTATGTGTGTGCATAGCAGGAGTGTGTGTACATCACAGGAGTGT  450

seq1  GTGTGTGCATCACAGGAGTGTGTTTGTGTGCATCACAGGAGTGTGTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATCACAGGAGTGTGTTTGTGTGCATCACAGGAGTGTGTACAT  500

seq1  AGCAAGAGTGTGTGTACATCACAGAAGTGTATGTGTGCATCACAGGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGTGTGTGTACATCACAGAAGTGTATGTGTGCATCACAGGAGTG  550

seq1  TGTGTGTGCATCACAGGAGTGTGCAGCAATGCTCAGCTTTTTCACGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCATCACAGGAGTGTGCAGCAATGCTCAGCTTTTTCACGTGGA  600

seq1  TTCTCAGAATTAGACCCAGGACCTTACATTTTCAGGAAAAGTATTTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAATTAGACCCAGGACCTTACATTTTCAGGAAAAGTATTTTATC  650

seq1  AAATGAGCTACGGTCCCACCCTCAAGACCAATTCTCATCAGATGGCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCTACGGTCCCACCCTCAAGACCAATTCTCATCAGATGGCTCTT  700

seq1  CTGTTGAGTTTGAGTCTTTGCAGTGTGAATATTAACTCCTTCACAAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGTTTGAGTCTTTGCAGTGTGAATATTAACTCCTTCACAAATCT  750

seq1  ATGGCTTGAAAATACATACGTTCTCCCATTCAGAATGCAATCACTTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGAAAATACATACGTTCTCCCATTCAGAATGCAATCACTTCTTG  800

seq1  TTAACTGTTTCCTTTTCTGGGAAGACTGTTTCAGTTCAGTGCAACCCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTTTCCTTTTCTGGGAAGACTGTTTCAGTTCAGTGCAACCCATT  850

seq1  TGCCCATTTAAAAAATTTTGTGATTTGTGCTCTGAGGATCATATTTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCCCATTTAAAAAATTTTGTGATTTGTGCTCTGAGGATCATA-TTTAAA  899

seq1  AGAAATCTTTACACCCAGTTGTGGTGTTGGACCCCTATAATCTCAGATT  949
      || ||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  AG-AATCTTTACACCCAGTTGTGGTG-TGGACCCCTAT-ATCTCAGATT  945