BAC Information

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BAC

Clone NameB6Ng01-268J23
Chromosome6 (Build37)
Map Location 107,534,838 - 107,671,015
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1, Lrrn1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268J23.bB6Ng01-268J23.g
ACCGA071433GA071434
length1,1761,131
definitionB6Ng01-268J23.b B6Ng01-268J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,534,838 - 107,536,006)(107,669,897 - 107,671,015)
sequence
gaattcatggtgtcatgtgaagagaaacctgtcctaaggttgtcatcaca
aaccatgtctagaagattacattatcgctgaaatgcccaaaagacgttag
aaaaaccagaaatgaatgttctagagggattgaagattgctttgcacaat
actcaatgttatgggttggggtcaagaaaagtggtgatgtagcaaggcct
tcagaaataatgcacaagacatcagtttcttgatgacaaaactctgctct
gggaacaggcatccttggcttcccaatggatatatagacagagagaaggt
gacataacgtcagggtcgttttacttgttttataatgacagggtagcctc
atggaggtaaacaggacaatgttttaaacgacttacactagttacatttt
caactttttcataattaaacacaaaaggttttaagaacagtagaccattc
tcaataattctcaggtactttatgtaggttctacataggttctgttgaaa
agtctgtctatctcttctctagaaaaataatgtatggacatagtatttct
ttgtttttaaacactcctggatatttcctaaaacaaagaatattcttaca
tcaccacaacagaatttacaaaatcaagacaatatgaatcaaatgttatc
taatcaatggctgctatttagatttttcagattatcatagcaatattctt
tacataataacgaaaagtccaagactatatgtttcacttagtttttatgc
ctgtttgcttcttcttttactctcctttacactggactggctgtggttcc
ttccttgcattttatagcactgacactttgtgaagagaataagctggtgg
tttaatggaatgccttggaatttgggttttgttagatctttttccatgat
tagatcctgcagcactttggcaggaattacatcacagggtccacactctc
agaggtcatttcagaaagctcctacaacaaacgtgccctgttgcacagcc
tgtaatttgcgtagctatcttgtttctctgcataaagtcatcctttgctc
tgttagtcacctgactggagaattgctctgaagagttagcatccacctga
acgaactcttgccttgaatctttgctgtttttcccccaccataatgaatt
gctcaaatccaaactgaagttataaa

gaattcctggtcctctggctcttgaaatctttctgccctatcttccatag
aaaataagctcatgaagtttctgaacttgcttcttgcaaagagaatcaga
aggaataaggtcttttgggcttaaatttttgttgttgcttgtttgtttgt
ttgtttgtttgtttgtttgtttttaatttgtgggcttctttacagaaaga
attttgtaatctgcctgcactccaattctgtcatgtctttgataaagact
tgttttagtatgaatctagactttcctgggtctggaagggagacatcaga
gttcactttctaagtgttttctttcctctgcatttctccctggacacatg
cataggtttgagtgacttcttttgggttgcaggaaattctgtgtcttggt
gtagagttaaaatctctaccaatgatccatatgtggagtttctatatata
ttttcatgatagctacctacctacctgcccacctacttttctttctctct
ttctctctttttccctttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttctttctttcttcctttctttctttgtctct
ctctttcttgggatgatctcgctttatttatatgtagtataaatacaaca
ttcacatacaacacacacacacacacacacacacacacacacacacagcc
atttgcctagcataaatgtcattatctcacaaaattaccctcacagtttt
ttttttctgatcttttgtagcattttgactactctttatatcactgataa
ttttctttgtactgcaattttctgtgtctgtcgtatctttccttagtcag
gtctaaacattgagggcaaagtagaaaatgattgtgactgttcttttata
ccctccaatacccaaggcattacttaatactcagtaggtacttattattc
aggtagatagataaactaatctgatctttagttggaaagcttctaatgtc
aggtgatagggaaaaaaaaggtgatctaccttttcagaacagttttaata
aatcagacttgtctgcatctcatattcagaaacagtgctgaaatttcatg
gaattaagaagccagccagccttccaccgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107534838_107536006
seq2: B6Ng01-268J23.b_46_1221

seq1  GAATTCATGGTGTCATGTGAAGAGAAACCTGTCCTAAGGTTGTCATCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTGTCATGTGAAGAGAAACCTGTCCTAAGGTTGTCATCACA  50

seq1  AACCATGTCTAGAAGATTACATTATCGCTGAAATGCCCAAAAGACGTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGTCTAGAAGATTACATTATCGCTGAAATGCCCAAAAGACGTTAG  100

seq1  AAAAACCAGAAATGAATGTTCTAGAGGGATTGAAGATTGCTTTGCACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAGAAATGAATGTTCTAGAGGGATTGAAGATTGCTTTGCACAAT  150

seq1  ACTCAATGTTATGGGTTGGGGTCAAGAAAAGTGGTGATGTAGCAAGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATGTTATGGGTTGGGGTCAAGAAAAGTGGTGATGTAGCAAGGCCT  200

seq1  TCAGAAATAATGCACAAGACATCAGTTTCTTGATGACAAAACTCTGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATAATGCACAAGACATCAGTTTCTTGATGACAAAACTCTGCTCT  250

seq1  GGGAACAGGCATCCTTGGCTTCCCAATGGATATATAGACAGAGAGAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGGCATCCTTGGCTTCCCAATGGATATATAGACAGAGAGAAGGT  300

seq1  GACATAACGTCAGGGTCGTTTTACTTGTTTTATAATGACAGGGTAGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAACGTCAGGGTCGTTTTACTTGTTTTATAATGACAGGGTAGCCTC  350

seq1  ATGGAGGTAAACAGGACAATGTTTTAAACGACTTACACTAGTTACATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTAAACAGGACAATGTTTTAAACGACTTACACTAGTTACATTTT  400

seq1  CAACTTTTTCATAATTAAACACAAAAGGTTTTAAGAACAGTAGACCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTTCATAATTAAACACAAAAGGTTTTAAGAACAGTAGACCATTC  450

seq1  TCAATAATTCTCAGGTACTTTATGTAGGTTCTACATAGGTTCTGTTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAATTCTCAGGTACTTTATGTAGGTTCTACATAGGTTCTGTTGAAA  500

seq1  AGTCTGTCTATCTCTTCTCTAGAAAAATAATGTATGGACATAGTATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCTATCTCTTCTCTAGAAAAATAATGTATGGACATAGTATTTCT  550

seq1  TTGTTTTTAAACACTCCTGGATATTTCCTAAAACAAAGAATATTCTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTAAACACTCCTGGATATTTCCTAAAACAAAGAATATTCTTACA  600

seq1  TCACCACAACAGAATTTACAAAATCAAGACAATATGAATCAAATGTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACAACAGAATTTACAAAATCAAGACAATATGAATCAAATGTTATC  650

seq1  TAATCAATGGCTGCTATTTAGATTTTTCAGATTATCATAGCAATATTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAATGGCTGCTATTTAGATTTTTCAGATTATCATAGCAATATTCTT  700

seq1  TACATAATAACGAAAAGTCCAAGACTATATGTTTCACTTAGTTTTTATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATAACGAAAAGTCCAAGACTATATGTTTCACTTAGTTTTTATGC  750

seq1  CTGTTTGCTTCTTCTTTTACTCTCCTTTACACTGGACTGGCTGTGGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCTTCTTCTTTTACTCTCCTTTACACTGGACTGGCTGTGGTTCC  800

seq1  TTCCTTGCATTTTATAGCACTGACACTTTGTGAAGAGAATAAGCTGGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCATTTTATAGCACTGACACTTTGTGAAGAGAATAAGCTGGTGG  850

seq1  TTTAATGGAATGCCTTGGAATTTGGGTTTTGTTAGATCTTTTTCCATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGAATGCCTTGGAATTTGGGTTTTGTTAGATCTTTTTCCATGAT  900

seq1  TAGATCCTGCAGCACTTTGGCAGGAATTACATCACAGGGTCCACACTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCTGCAGCACTTTGGCAGGAATTACATCACAGGGTCCACACTCTC  950

seq1  AGAGGTCATTTCAGAAGGCTCCTACAACAAACGTGCCCTGTTGCACAGCC  1000
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  AGAGGTCATTTCAGAAAGCTCCTACAACAAACGTGCCCTGTTGCACAG-C  999

seq1  CTGTAATTTGCGTAGCTATCTTGTTTCTCTGCATAAAGTCATCCTTTGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGTAATTTGCGTAGCTATCTTGTTTCTCTGCATAAAGTCATCCTTTGC-  1048

seq1  TCTG-TAGTCACCTGACTGGAGAA-TGCTCTG-AGAG-TAGCATCCA-CT  1095
      |||| ||||||||||||||||||| ||||||| |||| ||||||||| ||
seq2  TCTGTTAGTCACCTGACTGGAGAATTGCTCTGAAGAGTTAGCATCCACCT  1098

seq1  G-ACG-ACTCTTGCC-TGAATCTTTTGCTGTTTTTTCCCCA-CATAATGA  1141
      | ||| ||||||||| |||||| |||||||||||| ||||| ||||||||
seq2  GAACGAACTCTTGCCTTGAATC-TTTGCTGTTTTTCCCCCACCATAATGA  1147

seq1  TTTGCTTCATAT-CAAACTGAA-TTATAAA  1169
       |||| ||| || ||||||||| |||||||
seq2  ATTGC-TCAAATCCAAACTGAAGTTATAAA  1176


seq1: chr6_107669897_107671015
seq2: B6Ng01-268J23.g_68_1198 (reverse)

seq1  ATCGGTGGAAGCCT-GCTGGC-TCTAAATTCCATGAA--TTCAGCACTGT  46
      ||||||||||| || |||||| ||| |||||||||||  |||||||||||
seq2  ATCGGTGGAAGGCTGGCTGGCTTCTTAATTCCATGAAATTTCAGCACTGT  50

seq1  TTCTGATTATGAGATGCAGAC-AGTCTGA-TTATTAAAACTG-TCTGAAA  93
      |||||| |||||||||||||| ||||||| |||||||||||| |||||||
seq2  TTCTGAATATGAGATGCAGACAAGTCTGATTTATTAAAACTGTTCTGAAA  100

seq1  A-GTAGATTCACC--TTTTTTCCCTATCACCCTGACA-TAG-AGCTTTCC  138
      | ||||| |||||  |||||||||||||| ||||||| ||| ||||||||
seq2  AGGTAGA-TCACCTTTTTTTTCCCTATCA-CCTGACATTAGAAGCTTTCC  148

seq1  AACTAAAGATCAGATTAGTTTATCTATCTACCTGAATAATAAGTACCTAC  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGATCAGATTAGTTTATCTATCTACCTGAATAATAAGTACCTAC  198

seq1  TGAGTATTAAGTAATGCCTTGGGTATTGGAGGGTTATAAAGAACAGTCAC  238
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  TGAGTATTAAGTAATGCCTTGGGTATTGGAGGGTATAAAAGAACAGTCAC  248

seq1  AATCA-TTTCTACTTTGCCCTCAATGTTTAGACCTGACT-AGGAAAGATA  286
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATCATTTTCTACTTTGCCCTCAATGTTTAGACCTGACTAAGGAAAGATA  298

seq1  CGACAGACACAGAAAATTGCAGTACAAAGAAAATTATCAGTGATATAAAG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGACACAGAAAATTGCAGTACAAAGAAAATTATCAGTGATATAAAG  348

seq1  AGTAGTCAAAATGCTACAAAAGATCAGAAAAAAAAAACTGTGAGGGTAAT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCAAAATGCTACAAAAGATCAGAAAAAAAAAACTGTGAGGGTAAT  398

seq1  TTTGTGAGATAATGACATTTATGCTAGGCAAATGGCTGTGTGTGTGTGTG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGATAATGACATTTATGCTAGGCAAATGGCTGTGTGTGTGTGTG  448

seq1  TGTGTGTGTGTGTGTGTGTGTGTTGTATGTGAATGTTGTATTTATACTAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTTGTATGTGAATGTTGTATTTATACTAC  498

seq1  ATATAAATAAAGCGAGATCATCCCAAGAAAGAGAGAGACAAAGAAAGAAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAAAGCGAGATCATCCCAAGAAAGAGAGAGACAAAGAAAGAAA  548

seq1  GGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  598

seq1  AAGAAAGAAAGAAAGAAAGGGAAAAAGAGAGAAAGAGAGAAAGAAAAGTA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGGGAAAAAGAGAGAAAGAGAGAAAGAAAAGTA  648

seq1  GGTGGGCAGGTAGGTAGGTAGCTATCATGAAAATATATATAGAAACTCCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCAGGTAGGTAGGTAGCTATCATGAAAATATATATAGAAACTCCA  698

seq1  CATATGGATCATTGGTAGAGATTTTAACTCTACACCAAGACACAGAATTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGATCATTGGTAGAGATTTTAACTCTACACCAAGACACAGAATTT  748

seq1  CCTGCAACCCAAAAGAAGTCACTCAAACCTATGCATGTGTCCAGGGAGAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAACCCAAAAGAAGTCACTCAAACCTATGCATGTGTCCAGGGAGAA  798

seq1  ATGCAGAGGAAAGAAAACACTTAGAAAGTGAACTCTGATGTCTCCCTTCC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGGAAAGAAAACACTTAGAAAGTGAACTCTGATGTCTCCCTTCC  848

seq1  AGACCCAGGAAAGTCTAGATTCATACTAAAACAAGTCTTTATCAAAGACA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGGAAAGTCTAGATTCATACTAAAACAAGTCTTTATCAAAGACA  898

seq1  TGACAGAATTGGAGTGCAGGCAGATTACAAAATTCTTTCTGTAAAGAAGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAATTGGAGTGCAGGCAGATTACAAAATTCTTTCTGTAAAGAAGC  948

seq1  CCACAAATTAAAAACAAACAAACAAACAAACAAACAAACAAACAAGCAAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATTAAAAACAAACAAACAAACAAACAAACAAACAAACAAGCAAC  998

seq1  AACAAAAATTTAAGCCCAAAAGACCTTATTCCTTCTGATTCTCTTTGCAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATTTAAGCCCAAAAGACCTTATTCCTTCTGATTCTCTTTGCAA  1048

seq1  GAAGCAAGTTCAGAAACTTCATGAGCTTATTTTCTATGGAAGATAGGGCA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGTTCAGAAACTTCATGAGCTTATTTTCTATGGAAGATAGGGCA  1098

seq1  GAAAGATTTCAAGAGCCAGAGGACCAGGAATTC  1119
      |||||||||||||||||||||||||||||||||
seq2  GAAAGATTTCAAGAGCCAGAGGACCAGGAATTC  1131


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