BAC Information

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BAC

Clone NameB6Ng01-270H10
Chromosome6 (Build37)
Map Location 121,167,586 - 121,312,346
singlet/doubletdoublet
Overlap geneTuba8, Usp18, Slc6a13, Slc6a12
Upstream geneB4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26
Downstream geneIqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270H10.bB6Ng01-270H10.g
ACCGA072795GA072796
length1,103166
definitionB6Ng01-270H10.b B6Ng01-270H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,167,586 - 121,168,700)(121,312,181 - 121,312,346)
sequence
gaattccatgctgctctcttatgctcatctgtagagtgggaagaaaagtg
gctgggcagacagtgtaaagagggccactcgatgcctgtgccagcttctg
ctggggtatcaccctgaggttacctagttatgatgtgagaggtggatttt
ggcttggtttttagaggtttcagtgtgtgcgtggttgtctctggtggtcc
ttggcctgaggtgaaggggcacatggtagaagcaagtgataaaccacgta
cttgatggctaaggagcgaaagagaaactgagggagggactggggttcca
cagtcccatgagggcatgcccctgagaacccaatcacatactgctgggct
ccacctcttaggctcccctacttcttaatagtgccagagtctgtgggtca
ggcctttaaacaggggcacctatggaagatattccaggtccaaacaaact
ataggaccctctcatgaaccaggttccccatggagtcctgaggatgttca
tagaccacagggttccaagacatttcctgtaagttgtaatctcacttaca
tctgaactctaccctttgtcccgctttggtctgaacttccggtgctgcat
ctagcgcactgcagccccagtgcgagcttgctgcgcaagattccaaacag
gaaaacagagatcaagcccagaaccttgtgtgtggtaggcaagctctctt
tatgtaactatgaaacttttgcttgcccacactgtgagcaaaagcgctct
ctgggatgttgctctgtggtggagtcagaaggacacctcgagtggggaac
aaatgaggttttctcaagatgtctttttttttttttttttttggttttta
ctttggtaaagatatttattcatttaataaaaaaaattgaggagggcatc
aacccagaaacatgggcatcacatgttggcggttgcagctcccttctctc
tctgctcgtcttctcatgcttaatattattattttactttattttttgtt
tcctgcaaaagtccctcatcttcccggaaggctagatgtttcagagaaag
tcaactgactgcaacagcagcactcaataggctgtggcggtagttggcat
aca
acctccctgcaaaaaagccacgtgtaacaataacagcagggaagctgttt
tgaaggcatgagggctgcccatggagccttcagtgttcaacaacgccgcc
agcacaagtggcttggctgtaggaaatgcagtgaagaaatctgaggatgg
gtatggggtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_121167586_121168700
seq2: B6Ng01-270H10.b_42_1144

seq1  GAATTCCATGCTGCTCTCTTATGCTCATCTGTAGAGTGGGAAGAAAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCTGCTCTCTTATGCTCATCTGTAGAGTGGGAAGAAAAGTG  50

seq1  GCTGGGCAGACAGTGTAAAGAGGGCCACTCGATGCCTGTGCCAGCTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCAGACAGTGTAAAGAGGGCCACTCGATGCCTGTGCCAGCTTCTG  100

seq1  CTGGGGTATCACCCTGAGGTTACCTAGTTATGATGTGAGAGGTGGATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTATCACCCTGAGGTTACCTAGTTATGATGTGAGAGGTGGATTTT  150

seq1  GGCTTGGTTTTTAGAGGTTTCAGTGTGTGCGTGGTTGTCTCTGGTGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGTTTTTAGAGGTTTCAGTGTGTGCGTGGTTGTCTCTGGTGGTCC  200

seq1  TTGGCCTGAGGTGAAGGGGCACATGGTAGAAGCAAGTGATAAACCACGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTGAGGTGAAGGGGCACATGGTAGAAGCAAGTGATAAACCACGTA  250

seq1  CTTGATGGCTAAGGAGCGAAAGAGAAACTGAGGGAGGGACTGGGGTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGGCTAAGGAGCGAAAGAGAAACTGAGGGAGGGACTGGGGTTCCA  300

seq1  CAGTCCCATGAGGGCATGCCCCTGAGAACCCAATCACATACTGCTGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCATGAGGGCATGCCCCTGAGAACCCAATCACATACTGCTGGGCT  350

seq1  CCACCTCTTAGGCTCCCCTACTTCTTAATAGTGCCAGAGTCTGTGGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTTAGGCTCCCCTACTTCTTAATAGTGCCAGAGTCTGTGGGTCA  400

seq1  GGCCTTTAAACAGGGGCACCTATGGAAGATATTCCAGGTCCAAACAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTAAACAGGGGCACCTATGGAAGATATTCCAGGTCCAAACAAACT  450

seq1  ATAGGACCCTCTCATGAACCAGGTTCCCCATGGAGTCCTGAGGATGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGACCCTCTCATGAACCAGGTTCCCCATGGAGTCCTGAGGATGTTCA  500

seq1  TAGACCACAGGGTTCCAAGACATTTCCTGTAAGTTGTAATCTCACTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCACAGGGTTCCAAGACATTTCCTGTAAGTTGTAATCTCACTTACA  550

seq1  TCTGAACTCTACCCTTTGTCCCGCTTTGGTCTGAACTTCCGGTGCTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTCTACCCTTTGTCCCGCTTTGGTCTGAACTTCCGGTGCTGCAT  600

seq1  CTAGCGCACTGCAGCCCCAGTGCGAGCTTGCTGCGCAAGATTCCAAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGCACTGCAGCCCCAGTGCGAGCTTGCTGCGCAAGATTCCAAACAG  650

seq1  GAAAACAGAGATCAAGCCCAGAACCTTGTGTGTGGTAGGCAAGCTCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGAGATCAAGCCCAGAACCTTGTGTGTGGTAGGCAAGCTCTCTT  700

seq1  TATGTAACTATGAAACTTTTGCTTGCCCACACTGTGAGCAAAAGCGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACTATGAAACTTTTGCTTGCCCACACTGTGAGCAAAAGCGCTCT  750

seq1  CTGGGATGTTGCTCTGTGGTGGAGTCAGAAGGACACCTCGAGTGGGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGTTGCTCTGTGGTGGAGTCAGAAGGACACCTCGAGTGGGGAAC  800

seq1  AAATGAGGTTTTCTCAAGATGTCTTTTTTTTTTTTTTTTTTTGGTTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGTTTTCTCAAGATGTCTTTTTTTTTTTTTTTTTTTGGTTTTTA  850

seq1  C-TTGGTAAAGATATTTATTCA-TTAAT-AAAAAAATTGAGGAGGGCATC  897
      | |||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  CTTTGGTAAAGATATTTATTCATTTAATAAAAAAAATTGAGGAGGGCATC  900

seq1  AAACCAGAAACAT-GGCATCACATGTTGGCGGTTGCAGCTCCCTTCTCTC  946
      || |||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  AACCCAGAAACATGGGCATCACATGTTGGCGGTTGCAGCTCCCTTCTCT-  949

seq1  CTCTGCTCGTCTTCTCATGCTTTATTATTATTATTTTTACTTTTATTTTT  996
      |||||||||||||||||||| ||| |||||||| |||||| |||||||||
seq2  CTCTGCTCGTCTTCTCATGC-TTAATATTATTA-TTTTAC-TTTATTTTT  996

seq1  TGTTTTCCTGCAAAAGCCCTCCATCCTCCCCGGAAAGGCCTAGAATGTTC  1046
      || ||||||||||||| ||  ||| || |||||||  | |||| ||||| 
seq2  TG-TTTCCTGCAAAAGTCCCTCAT-CTTCCCGGAA--GGCTAG-ATGTTT  1041

seq1  CAGAAGGAAAGTCAACTGACTGGAAACCAGGCAGCACCCTCAATAAGCTG  1096
      ||||  |||||||||||||||| ||  || ||||||  ||||||| ||||
seq2  CAGA--GAAAGTCAACTGACTGCAA--CA-GCAGCA--CTCAATAGGCTG  1084

seq1  TGGCGGTAGTTGGCATACA  1115
      |||||||||||||||||||
seq2  TGGCGGTAGTTGGCATACA  1103

seq1: chr6_121312181_121312346
seq2: B6Ng01-270H10.g_72_237 (reverse)

seq1  CCCCCCCACCCCATACCCATCCTCAGATTTCTTCACTGCATTTCCTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCACCCCATACCCATCCTCAGATTTCTTCACTGCATTTCCTACAG  50

seq1  CCAAGCCACTTGTGCTGGCGGCGTTGTTGAACACTGAAGGCTCCATGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCACTTGTGCTGGCGGCGTTGTTGAACACTGAAGGCTCCATGGGC  100

seq1  AGCCCTCATGCCTTCAAAACAGCTTCCCTGCTGTTATTGTTACACGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCATGCCTTCAAAACAGCTTCCCTGCTGTTATTGTTACACGTGGC  150

seq1  TTTTTTGCAGGGAGGT  166
      ||||||||||||||||
seq2  TTTTTTGCAGGGAGGT  166