BAC Information

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BAC

Clone NameB6Ng01-270K03
Chromosome6 (Build37)
Map Location 43,107,938 - 43,234,033
singlet/doubletdoublet
Overlap geneOlfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5
Upstream geneTas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438
Downstream geneNobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270K03.bB6Ng01-270K03.g
ACCGA072923GA072924
length1,2101,115
definitionB6Ng01-270K03.b B6Ng01-270K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,232,823 - 43,234,033)(43,107,938 - 43,109,054)
sequence
gaattccacttgggtgccctgtgcgttgtgcaggagaaagagacggaaga
ggtttttgtgaggtccatgaagcttcatttcacacttctcccctcggatg
gaggagaacggagcatggtcaaataccaggaaccggctgcccctgcaaga
cagaagtcttttaagtctgagtctagagttttggaacttcacccaccctc
acccttggattccattcccctgccctagcttctacatataaaagtattca
tataaaagactgtatcatataaaagccatatgagggcttcaacttactct
gaatataatgtgtctcaaccaactatttactgcattcgtgatattcacta
ctttaaggcattgaagaggtaagaaccaatattaactttataaagtccta
atgaccagggtttcagctctgaaattagccaagtagctgtatcagctatt
atgctgggcacaacctaaagaagccacaaataaacgtattgaaaagacaa
catctcgtgctatagattactcatgtctataacacaggacaggtttggta
acactattcccacttctgtcctctaagttgactcatgactcagactgtga
gttgtctaattgaaaagggattccttggcagcaggtcatttgatgtccct
ctggtcctttcccactctttggtatgccctggactcccattccagccact
gactctcggggccgagacagcaacagacagtcattgaagagatgtaggtg
gactggacgagtggtcagtttccttctcagccctggggagacactgaact
caagggccgtcagctccccactcttcaccagccatcgagattgtgaaata
agtgggaaaatctacagagcaaaaagagagaggacgcagtgatgagtgtc
ctgttagtcctgcccaacttcccaatcaccaattccagatgttccctctt
gctctaaagcagtgggttctcaatcttcctaatgctgcaaccctttaatg
cagtccttatgtgtgggtgaccccccaaccataaaatactttgttgtcca
cttcatacctgtaaattactgtcatgaatcataatgtaaacaatcctgga
atatggcagaatcttatataaatcctccctaagagctgaaattaaacttt
ctcctgagagaacttgccagtgctgacaaatacgatggaatggctcacag
catccctttg
gaattcttcattttaataatattggtccttatatacatttttaacacttt
caatcctcctgcttactgaatctgactccaaaatgtttcaggacagaatc
agaccattatgtgtcccttagtcccttctaaataattgacttcatttgct
gtacattatgaagaatttcaaggcaagcagtgatataaactagtagaaat
gattaaagagaagtaggaagagatgagttcattaattgggagtgcaggct
gagctgtaggctgtctagtttgtaagaatgaattggagaaataaaccact
tagaggagaaaccctggaaacaaaaaaatcccaaacactgatttagatct
tcaaaggagcctaaaatgactggttcatgacctagaacactgtgaaaagc
catatgtcaatcatcccacaggtagtgacgtatactaattggatgtggtc
aagaaagtaagctgaggcagtctctggatggtcctttcttccctctcagc
tctgaactttgtctctgtaactccttccatgggtattttgttccccattc
caagaaggaacaaagtatccactcgttggtcttccttcttcttgagtttc
atgtgttttgcaaattgtatcttgggtagtttaagtttctgggctaatat
cagctcatcagtgagtgcatatcatgtgtgttcttttgtgattgggttgt
aaatgaagaaagtatctaataaaaaaaagaaagaaaaagaaactaagctg
gtaaagatcccttcctcatcttcccatccagaatgacagcaggttcaccc
aaaggctatgcatcctttgaggctaagactgcagtggtgggagagattat
agttcacagaaataatcatgtaactaaataaatgtgcatgtttccaaata
aagatcaataacaggcaaatcaatcaatactgccttagatcagtagcagg
aaaatcaatacccagattttcatctaacacagtggttcttcaacattcct
aatgttcgactctttaatacagttcctcatgtggtggtgacctccaaaca
taaaattacttgttgctactcatactgtaatatgctatgggttacaaaat
atatgtaaatataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_43232823_43234033
seq2: B6Ng01-270K03.b_44_1253 (reverse)

seq1  CAAAGGATGGCTGTGAG-CATCCACTTCTGTATTTGTCAGGCACTGGCAG  49
      ||||||   |||||||| ||| | | || |||||||||| ||||||||| 
seq2  CAAAGGGATGCTGTGAGCCATTC-CATC-GTATTTGTCA-GCACTGGCAA  47

seq1  AGTCTCTCAGGAGACAGTT--ATATCAGGCTTCCTTA-GGAGATTTTATA  96
        |||||||||||| ||||  || ||| |||  |||| ||||  ||||||
seq2  GTTCTCTCAGGAGAAAGTTTAATTTCA-GCT--CTTAGGGAGGATTTATA  94

seq1  TAAGATATCCTGCATAT--CAG--ATGTTTACATTATGATTCATGACAGT  142
      |||||| ||   |||||  |||   |||||||||||||||||||||||||
seq2  TAAGAT-TCTGCCATATTCCAGGATTGTTTACATTATGATTCATGACAGT  143

seq1  AAAATTACAGTTATGAAGT-GACAACAAAGTAATTTTATGGTTGGGGGGT  191
       || |||||| |||||||| ||||||||||| ||||||||||||||||||
seq2  -AATTTACAGGTATGAAGTGGACAACAAAGT-ATTTTATGGTTGGGGGGT  191

seq1  CACCACAACATAAGGAACTGCATTAAAGGGTTGCAGCATTAGGAAGATTG  241
      ||||   |||||||| ||||||||||||||||||||||||||||||||||
seq2  CACCCACACATAAGG-ACTGCATTAAAGGGTTGCAGCATTAGGAAGATTG  240

seq1  AGAA-CCACTGCTTTAGAGCAAGAGGGAACATCTGGAATTGGTGATTGGG  290
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCACTGCTTTAGAGCAAGAGGGAACATCTGGAATTGGTGATTGGG  290

seq1  AAGTTGGGCAGGACTAACAGGACACTCATCACCTGCGTCCTCTCTCTTTT  340
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGTTGGGCAGGACTAACAGGACACTCATCA-CTGCGTCCTCTCTCTTTT  339

seq1  TGCTCTGTAGATTTTCCCACTTATTTCACAATCTCGATGGCTGGTGAAGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTAGATTTTCCCACTTATTTCACAATCTCGATGGCTGGTGAAGA  389

seq1  GTGGGGAGCTGACGGCCCTTGAGTTCAGTGTCTCCCCAGGGCTGAGAAGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGCTGACGGCCCTTGAGTTCAGTGTCTCCCCAGGGCTGAGAAGG  439

seq1  AAACTGACCACTCGTCCAGTCCACCTACATCTCTTCAATGACTGTCTGTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACCACTCGTCCAGTCCACCTACATCTCTTCAATGACTGTCTGTT  489

seq1  GCTGTCTCGGCCCCGAGAGTCAGTGGCTGGAATGGGAGTCCAGGGCATAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCGGCCCCGAGAGTCAGTGGCTGGAATGGGAGTCCAGGGCATAC  539

seq1  CAAAGAGTGGGAAAGGACCAGAGGGACATCAAATGACCTGCTGCCAAGGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTGGGAAAGGACCAGAGGGACATCAAATGACCTGCTGCCAAGGA  589

seq1  ATCCCTTTTCAATTAGACAACTCACAGTCTGAGTCATGAGTCAACTTAGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTTCAATTAGACAACTCACAGTCTGAGTCATGAGTCAACTTAGA  639

seq1  GGACAGAAGTGGGAATAGTGTTACCAAACCTGTCCTGTGTTATAGACATG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAGTGGGAATAGTGTTACCAAACCTGTCCTGTGTTATAGACATG  689

seq1  AGTAATCTATAGCACGAGATGTTGTCTTTTCAATACGTTTATTTGTGGCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCTATAGCACGAGATGTTGTCTTTTCAATACGTTTATTTGTGGCT  739

seq1  TCTTTAGGTTGTGCCCAGCATAATAGCTGATACAGCTACTTGGCTAATTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGTTGTGCCCAGCATAATAGCTGATACAGCTACTTGGCTAATTT  789

seq1  CAGAGCTGAAACCCTGGTCATTAGGACTTTATAAAGTTAATATTGGTTCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGAAACCCTGGTCATTAGGACTTTATAAAGTTAATATTGGTTCT  839

seq1  TACCTCTTCAATGCCTTAAAGTAGTGAATATCACGAATGCAGTAAATAGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTTCAATGCCTTAAAGTAGTGAATATCACGAATGCAGTAAATAGT  889

seq1  TGGTTGAGACACATTATATTCAGAGTAAGTTGAAGCCCTCATATGGCTTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGACACATTATATTCAGAGTAAGTTGAAGCCCTCATATGGCTTT  939

seq1  TATATGATACAGTCTTTTATATGAATACTTTTATATGTAGAAGCTAGGGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATACAGTCTTTTATATGAATACTTTTATATGTAGAAGCTAGGGC  989

seq1  AGGGGAATGGAATCCAAGGGTGAGGGTGGGTGAAGTTCCAAAACTCTAGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATGGAATCCAAGGGTGAGGGTGGGTGAAGTTCCAAAACTCTAGA  1039

seq1  CTCAGACTTAAAAGACTTCTGTCTTGCAGGGGCAGCCGGTTCCTGGTATT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACTTAAAAGACTTCTGTCTTGCAGGGGCAGCCGGTTCCTGGTATT  1089

seq1  TGACCATGCTCCGTTCTCCTCCATCCGAGGGGAGAAGTGTGAAATGAAGC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGCTCCGTTCTCCTCCATCCGAGGGGAGAAGTGTGAAATGAAGC  1139

seq1  TTCATGGACCTCACAAAAACCTCTTCCGTCTCTTTCTCCTGCACAACGCA  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGACCTCACAAAAACCTCTTCCGTCTCTTTCTCCTGCACAACGCA  1189

seq1  CAGGGCACCCAAGTGGAATTC  1211
      |||||||||||||||||||||
seq2  CAGGGCACCCAAGTGGAATTC  1210

seq1: chr6_43107938_43109054
seq2: B6Ng01-270K03.g_65_1179

seq1  GAATTCTTCATTTTAATAATATTGGTCCTTATATACATTTTTAACACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTTTAATAATATTGGTCCTTATATACATTTTTAACACTTT  50

seq1  CAATCCTCCTGCTTACTGAATCTGACTCCAAAATGTTTCAGGACAGAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCCTGCTTACTGAATCTGACTCCAAAATGTTTCAGGACAGAATC  100

seq1  AGACCATTATGTGTCCCTTAGTCCCTTCTAAATAATTGACTTCATTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATTATGTGTCCCTTAGTCCCTTCTAAATAATTGACTTCATTTGCT  150

seq1  GTACATTATGAAGAATTTCAAGGCAAGCAGTGATATAAACTAGTAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTATGAAGAATTTCAAGGCAAGCAGTGATATAAACTAGTAGAAAT  200

seq1  GATTAAAGAGAAGTAGGAAGAGATGAGTTCATTAATTGGGAGTGCAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGAGAAGTAGGAAGAGATGAGTTCATTAATTGGGAGTGCAGGCT  250

seq1  GAGCTGTAGGCTGTCTAGTTTGTAAGAATGAATTGGAGAAATAAACCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTAGGCTGTCTAGTTTGTAAGAATGAATTGGAGAAATAAACCACT  300

seq1  TAGAGGAGAAACCCTGGAAACAAAAAAATCCCAAACACTGATTTAGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGAAACCCTGGAAACAAAAAAATCCCAAACACTGATTTAGATCT  350

seq1  TCAAAGGAGCCTAAAATGACTGGTTCATGACCTAGAACACTGTGAAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAGCCTAAAATGACTGGTTCATGACCTAGAACACTGTGAAAAGC  400

seq1  CATATGTCAATCATCCCACAGGTAGTGACGTATACTAATTGGATGTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCAATCATCCCACAGGTAGTGACGTATACTAATTGGATGTGGTC  450

seq1  AAGAAAGTAAGCTGAGGCAGTCTCTGGATGGTCCTTTCTTCCCTCTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTAAGCTGAGGCAGTCTCTGGATGGTCCTTTCTTCCCTCTCAGC  500

seq1  TCTGAACTTTGTCTCTGTAACTCCTTCCATGGGTATTTTGTTCCCCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTTTGTCTCTGTAACTCCTTCCATGGGTATTTTGTTCCCCATTC  550

seq1  CAAGAAGGAACAAAGTATCCACTCGTTGGTCTTCCTTCTTCTTGAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGAACAAAGTATCCACTCGTTGGTCTTCCTTCTTCTTGAGTTTC  600

seq1  ATGTGTTTTGCAAATTGTATCTTGGGTAGTTTAAGTTTCTGGGCTAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTGCAAATTGTATCTTGGGTAGTTTAAGTTTCTGGGCTAATAT  650

seq1  CAGCTCATCAGTGAGTGCATATCATGTGTGTTCTTTTGTGATTGGGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATCAGTGAGTGCATATCATGTGTGTTCTTTTGTGATTGGGTTGT  700

seq1  AAATGAAGAAAGTATCTAATAAAAAAAAGAAAGAAAAAGAAACTAAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGAAAGTATCTAATAAAAAAAAGAAAGAAAAAGAAACTAAGCTG  750

seq1  GTAAAGATCCCTTCCTCATCTTCCCATCCAGAATGACAGCAGGTTCACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATCCCTTCCTCATCTTCCCATCCAGAATGACAGCAGGTTCACCC  800

seq1  -AAGGCTATGCATCCTTTGAGGCTAAGACTGCAGTGGTGGGAGAGATTAT  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTATGCATCCTTTGAGGCTAAGACTGCAGTGGTGGGAGAGATTAT  850

seq1  AGTTCACAGAAATAATCATGTAACTAAATAAATGTGCATGTTTCCAAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACAGAAATAATCATGTAACTAAATAAATGTGCATGTTTCCAAATA  900

seq1  AAGATCAATAACAGGCAAATCAATCAATACTGCCTTAGATCAGTAGCAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAATAACAGGCAAATCAATCAATACTGCCTTAGATCAGTAGCAGG  950

seq1  AAAATCAATACCCAGATTTTCATCTAACACAGTGGTTC-TCAACATTCCT  998
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAATCAATACCCAGATTTTCATCTAACACAGTGGTTCTTCAACATTCCT  1000

seq1  AATGTTCCGACTCTTTAATACAGTTCCTCATGTTGTGGTGACCTCCAAAC  1048
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  AATGTT-CGACTCTTTAATACAGTTCCTCATGTGGTGGTGACCTCCAAAC  1049

seq1  ATAAAATTACTTGTTGCTACTTCATAACTGTAATTATGCTAT-GGTTACA  1097
      |||||||||||||||||||| |||| ||||||| |||||||| |||||||
seq2  ATAAAATTACTTGTTGCTAC-TCAT-ACTGTAA-TATGCTATGGGTTACA  1096

seq1  AAATATAATGTAAATATACA  1117
      |||||| |||||||||||||
seq2  AAATAT-ATGTAAATATACA  1115