BAC Information

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BAC

Clone NameB6Ng01-271B03
Chromosome6 (Build37)
Map Location 71,198,458 - 71,199,541
singlet/doubletsinglet
Overlap geneSmyd1
Upstream geneIgk, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1
Downstream geneKrcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271B03.bB6Ng01-271B03.g
ACCGA073249GA073250
length7761,081
definitionB6Ng01-271B03.b B6Ng01-271B03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ggaattcttcttgatagatttttttcctttgataagtgtgaaatgtcctt
ccttatcttttttggtaacttttggttgaaagtcgattttattcaatatt
agaatggctactccagcttgtttcttggaaccatttgcttggaaaattgt
tttccagccctttactctgaggtagtgtctgtctttgacactgaggtaca
tttcctgtatgtagcaaaatgttgggccctgtttatacatccagtctgtt
agtctatgtctttttattggggaattgagtccattgaggttaagagatat
taaggaaaagtaattgttgcttcctgttatttttgttgtatgaggtggaa
ttatgtttgtgtgtctatcttcttttaggtttgttaaaaaaaagatgact
ttgttgctttttctaggatgtagtttccttccttgtgttggagttttctg
tctattctcctttgtagggccagatttgtggaaagatactgtgtaaactt
ggttttgtcatggaatatcttattttctctatctatggtaattgagagtt
ttgctgggtgtagtagcctgggctggcatttgtgttctcttagggtctgt
ataacctcggtccaggatctttctggctttcatagtctctggtgatgtct
ggtgtaattctgataaatctgcccttatatgttacttgacctttttttcc
tttactgctttttaaatattttttctttgtttttgtgcattttggtgttt
tgattattacatgactggaggaaatt
gaattcacccacatctttatgtgtttatgtgccagctcagcctgaggtct
actgggaagcaaagtctctgtgttgtttatattgaagaaccacagagatg
gtttgaatgagatggcccccatggttttaggcatttaagtacttggtccc
cagttgatgatggtgtttgggaggcttaggaagcctggccttgctggagg
gagccatgtgactggaggcaggttttgagagcttaaagatgtgcttcatt
tggagttcattttgtggttcaaagtgcgatccctcagctgctgctccagt
ccccatgcctgcctgtagccatgctttcctggtgcaatggtggcggcctc
ttactcttctggactgaactttgtgcatgctagacaaacattttaccagt
tgagctacatctttagcccccaggctgagtttttaagcaaatttgagaca
caaaagcattggctcaaccttattggatccatagtattcttgcaggactg
ttcgttcacggtgcacagaccttgtctctgcatatatctgttatggctcc
ttattcccatataaggagctgtcacacagctgctgttctggtcctcttga
ctctgacagatgagagaactcaggacagggctgaagagtgagtagtgatt
tgcagactttcctccagggcagagagtatacttcagggtcctggcaaaga
ggtttcttccatgtattccaggagcagtggttgggagcaaagacttgtga
gaccagtgctgccaatgaggacagtgatcactggcactctaaagagcaga
ttaggagactaggagtgctggggaggtggctcagaggttaagagcattgc
tgctcttccagagttcaattctgacacctacacagtggctcacagtgtag
ctccagtaactccagttccagggactctgacccctgtgaacaacatgaac
acatatagtacctgcatagtgtacatgcaggcaacatccatacacattaa
aataaatatacaaaagtagagagtggctaaaaacattcacttcaggatgg
gtgaaggtttggtggaaaaatgggatggcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_71198458_71199541
seq2: B6Ng01-271B03.g_66_1146 (reverse)

seq1  TAGCCATTCCCATTTT--CACCAAA-CTTCA-CCATCCTCGAAGTG-ATG  45
      |||||| |||||||||  ||||||| ||||| ||||||| |||||| |||
seq2  TAGCCA-TCCCATTTTTCCACCAAACCTTCACCCATCCT-GAAGTGAATG  48

seq1  TTTTTAGCCACTCTTCTTAACTTTTTGTATATTTATTTT-ATGTGTATGG  94
      ||||||||||||| |||  || ||||||||||||||||| ||||||||||
seq2  TTTTTAGCCACTC-TCT--AC-TTTTGTATATTTATTTTAATGTGTATGG  94

seq1  ATGTTTTGCCTGCATGTACACTATGCAGGTACTATATGTGTTCATGGTGT  144
      |||  ||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATG--TTGCCTGCATGTACACTATGCAGGTACTATATGTGTTCATGTTGT  142

seq1  TCACAGGGGTCAGAGTCCCTGGAACTGGAGTTACTGGAGCTACACTGTGA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGGTCAGAGTCCCTGGAACTGGAGTTACTGGAGCTACACTGTGA  192

seq1  GCCACTGTGTAGGTGTCAGAAATTGAACTCTGGAAGAGCAGCAATGCTCT  244
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCACTGTGTAGGTGTCAG-AATTGAACTCTGGAAGAGCAGCAATGCTCT  241

seq1  TAACCTCTGAGCCACCTCCCCAGCACTCCTAGTCTCCTAATCTGCTCTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTGAGCCACCTCCCCAGCACTCCTAGTCTCCTAATCTGCTCTTT  291

seq1  AGAGTGCCAGTGATCACTGTCCTCATTGGCAGCACTGGTCTCACAAGTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCCAGTGATCACTGTCCTCATTGGCAGCACTGGTCTCACAAGTCT  341

seq1  TTGCTCCCAACCACTGCTCCTGGAATACATGGAAGAAACCTCTTTGCCAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCCAACCACTGCTCCTGGAATACATGGAAGAAACCTCTTTGCCAG  391

seq1  GACCCTGAAGTATACTCTCTGCCCTGGAGGAAAGTCTGCAAATCACTACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGAAGTATACTCTCTGCCCTGGAGGAAAGTCTGCAAATCACTACT  441

seq1  CACTCTTCAGCCCTGTCCTGAGTTCTCTCATCTGTCAGAGTCAAGAGGAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTCAGCCCTGTCCTGAGTTCTCTCATCTGTCAGAGTCAAGAGGAC  491

seq1  CAGAACAGCAGCTGTGTGACAGCTCCTTATATGGGAATAAGGAGCCATAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGCAGCTGTGTGACAGCTCCTTATATGGGAATAAGGAGCCATAA  541

seq1  CAGATATATGCAGAGACAAGGTCTGTGCACCGTGAACGAACAGTCCTGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATGCAGAGACAAGGTCTGTGCACCGTGAACGAACAGTCCTGCA  591

seq1  AGAATACTATGGATCCAATAAGGTTGAGCCAATGCTTTTGTGTCTCAAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACTATGGATCCAATAAGGTTGAGCCAATGCTTTTGTGTCTCAAAT  641

seq1  TTGCTTAAAAACTCAGCCTGGGGGCTAAAGATGTAGCTCAACTGGTAAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAAAAACTCAGCCTGGGGGCTAAAGATGTAGCTCAACTGGTAAAA  691

seq1  TGTTTGTCTAGCATGCACAAAGTTCAGTCCAGAAGAGTAAGAGGCCGCCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTAGCATGCACAAAGTTCAGTCCAGAAGAGTAAGAGGCCGCCA  741

seq1  CCATTGCACCAGGAAAGCATGGCTACAGGCAGGCATGGGGACTGGAGCAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCACCAGGAAAGCATGGCTACAGGCAGGCATGGGGACTGGAGCAG  791

seq1  CAGCTGAGGGATCGCACTTTGAACCACAAAATGAACTCCAAATGAAGCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGGGATCGCACTTTGAACCACAAAATGAACTCCAAATGAAGCAC  841

seq1  ATCTTTAAGCTCTCAAAACCTGCCTCCAGTCACATGGCTCCCTCCAGCAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAGCTCTCAAAACCTGCCTCCAGTCACATGGCTCCCTCCAGCAA  891

seq1  GGCCAGGCTTCCTAAGCCTCCCAAACACCATCATCAACTGGGGACCAAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCTTCCTAAGCCTCCCAAACACCATCATCAACTGGGGACCAAGT  941

seq1  ACTTAAATGCCTAAAACCATGGGGGCCATCTCATTCAAACCATCTCTGTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATGCCTAAAACCATGGGGGCCATCTCATTCAAACCATCTCTGTG  991

seq1  GTTCTTCAATATAAACAACACAGAGACTTTGCTTCCCAGTAGACCTCAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAATATAAACAACACAGAGACTTTGCTTCCCAGTAGACCTCAGG  1041

seq1  CTGAGCTGGCACATAAACACATAAAGATGTGGGTGAATTC  1084
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGGCACATAAACACATAAAGATGTGGGTGAATTC  1081