BAC Information

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BAC

Clone NameB6Ng01-274C13
Chromosome6 (Build37)2 (Build37)
Map Location 146,473,671 - 146,474,762166,356,153 - 166,356,822
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn, Itpr2
Downstream gene4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274C13.bB6Ng01-274C13.g
ACCGA075537GA075538
length1,139938
definitionB6Ng01-274C13.b B6Ng01-274C13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,473,671 - 146,474,762)(166,356,153 - 166,356,822)
sequence
gaattctgtaaagccattgattcatttacacagcataaatttataaaagt
tcttctttatgttgatctgcagggagtctgctcagttgtatgagttaatg
cccaggaatccttagggtatataagagtgacaggaaagactacaagaaga
catcctaagataaagtctcttgggaccttgcctctcagcactcacccata
ttaagccatgcaaaaaggtgagcgactttcttggaggtcacctgttagcc
ttagcctttcctggacggctcctgacaaataaggaaagatttgttttaat
tgtgagtggcactgtcccctgagcagggctcctggggtgtatggagtgag
tggagagaactagctgagctaaccagcttgcatgtattcattgctctctg
tctctgattgcaaatgtgacatgagctacaatttccctaataagatagac
tgtgacctggaactgaagcagaaatgcacactttcctcttaagtcctttt
agtaagaacatttttcacagcaacaaaggaaaagaaactgagacggtgaa
cataggcatacatgacagaataaggggatgtggcttcttttctgctgaat
cagcatgtgttgctagtgtcttgatttccactggtttccttgaatatctc
cagggagcagttccttcctctcgcaagttttctcaatacattagctctca
aaatgatttctaactggctgttgtggctggcacatacctataatcccagc
actagggaggcagagtcaagaagcctgccagcagaccagtgggaggttga
gcagacaaagctataccatcaagcctgatgacctggatgttgggatccac
ttggggggatgggagaacagactaccataagttgtcctctaacctctgca
tgctcacaatcactcatgcacacacacccccatagagtaaataaataaat
aaatgtaattttttaaaaaagatttccacagttcaaggccagcctagaca
taatatagtgagttttgagaacaccccaggctacagaacaagaacccttg
tctcaaaagaacaaagcgaatgtgctggtatcaatatacagagccaccaa
gacactgttcagaagtgtgaaattgtgggctcagccaaa
gaattcatgcagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cggtcccgagttttcttgtattttttcgtcccggattttttctcgtcccg
gaatttctcgtcccgggtttcggcaccaattcttaatagcgttctcacgc
ccggccaggaagaacacaacagaccagaatcttctgcggcaaaactttat
tgcttaaatcttcaggagctaggagcgcaaacccccagccccaaaagcga
aagccccttcaattcttacatctttaggagccagagctccggcgtgccaa
agcgcagagcgcgctctattgtttacatctttaggcagcgagagagcgca
gggcgcgcagagccagagagatgccagcgagagagagtggcggaaacccc
gtcccctttttaggagagttatatttcgcctaggacgcatcactccctga
ttggctgcagcccatggccgagctgacgttcacgggaaaggcagagtaca
agtagtcgtaaaatacccttggcacatgcgcagattatttgtttaccact
tagaacacaggatgtcagcgccatcttatgacggcaaatgtgggggcggc
tcccaacataggacaaaaaggacgaagacactgtcacagctaggatggat
acctggagtggaacagaaaggaagcctgtgtggagagtcatcctgttcag
ccaattgctggttgtaattctcatgttttgatggtttctgcttcattgca
cagtcttctaactacctgggacttgaagaccttccctcctttccagagct
atcattgaactaaaggaggtaaggtatgaatgacttcacttcacaggcat
gaatataagttcctttttcagttctggggctaagattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_146473671_146474762
seq2: B6Ng01-274C13.b_86_1179

seq1  AAAGTTCTTCTTTATGTTGATCTGCAGGGAGTCTGCTCAGTTGTATGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTTCTTTATGTTGATCTGCAGGGAGTCTGCTCAGTTGTATGAGT  50

seq1  TAATGCCCAGGAATCCTTAGGGTATATAAGAGTGACAGGAAAGACTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCCAGGAATCCTTAGGGTATATAAGAGTGACAGGAAAGACTACAA  100

seq1  GAAGACATCCTAAGATAAAGTCTCTTGGGACCTTGCCTCTCAGCACTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATCCTAAGATAAAGTCTCTTGGGACCTTGCCTCTCAGCACTCAC  150

seq1  CCATATTAAGCCATGCAAAAAGGTGAGCGACTTTCTTGGAGGTCACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTAAGCCATGCAAAAAGGTGAGCGACTTTCTTGGAGGTCACCTGT  200

seq1  TAGCCTTAGCCTTTCCTGGACGGCTCCTGACAAATAAGGAAAGATTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTAGCCTTTCCTGGACGGCTCCTGACAAATAAGGAAAGATTTGTT  250

seq1  TTAATTGTGAGTGGCACTGTCCCCTGAGCAGGGCTCCTGGGGTGTATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTGAGTGGCACTGTCCCCTGAGCAGGGCTCCTGGGGTGTATGGA  300

seq1  GTGAGTGGAGAGAACTAGCTGAGCTAACCAGCTTGCATGTATTCATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGGAGAGAACTAGCTGAGCTAACCAGCTTGCATGTATTCATTGCT  350

seq1  CTCTGTCTCTGATTGCAAATGTGACATGAGCTACAATTTCCCTAATAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTGATTGCAAATGTGACATGAGCTACAATTTCCCTAATAAGA  400

seq1  TAGACTGTGACCTGGAACTGAAGCAGAAATGCACACTTTCCTCTTAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTGACCTGGAACTGAAGCAGAAATGCACACTTTCCTCTTAAGTC  450

seq1  CTTTTAGTAAGAACATTTTTCACAGCAACAAAGGAAAAGAAACTGAGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTAAGAACATTTTTCACAGCAACAAAGGAAAAGAAACTGAGACG  500

seq1  GTGAACATAGGCATACATGACAGAATAAGGGGATGTGGCTTCTTTTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATAGGCATACATGACAGAATAAGGGGATGTGGCTTCTTTTCTGC  550

seq1  TGAATCAGCATGTGTTGCTAGTGTCTTGATTTCCACTGGTTTCCTTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGCATGTGTTGCTAGTGTCTTGATTTCCACTGGTTTCCTTGAAT  600

seq1  ATCTCCAGGGAGCAGTTCCTTCCTCTCGCAAGTTTTCTCAATACATTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGGGAGCAGTTCCTTCCTCTCGCAAGTTTTCTCAATACATTAGC  650

seq1  TCTCAAAATGATTTCTAACTGGCTGTTGTGGCTGGCACATACCTATAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAATGATTTCTAACTGGCTGTTGTGGCTGGCACATACCTATAATC  700

seq1  CCAGCACTAGGGAGGCAGAGTCAAGAAGCCTGCCAGCAGACCAGTGGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTAGGGAGGCAGAGTCAAGAAGCCTGCCAGCAGACCAGTGGGAG  750

seq1  GTTGAGCAGACAAAGCTATACCATCAAGCCTGATGACCTGGATGTTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCAGACAAAGCTATACCATCAAGCCTGATGACCTGGATGTTGGGA  800

seq1  TCCACTTGGGGGGATGGGAGAACAGACTACCATAAGTTGTCCTCTAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTGGGGGGATGGGAGAACAGACTACCATAAGTTGTCCTCTAACCT  850

seq1  CTGCATGCTCACAATCACTCATGCACACACACCCCCATAGAGTAAATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCTCACAATCACTCATGCACACACACCCCCATAGAGTAAATAAA  900

seq1  TAAATAAATGTAATTTTTTAAAAAAGATTTCCACAGGTTCAAGGCCAGCC  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAATAAATGTAATTTTTTAAAAAAGATTTCCACA-GTTCAAGGCCAGCC  949

seq1  TAGACAT-ATATAGTGAG-TTTGAGAACACCCAGGGCTACAGAACAAGA-  997
      ||||||| |||||||||| |||||||||||||  ||||||||||||||| 
seq2  TAGACATAATATAGTGAGTTTTGAGAACACCCCAGGCTACAGAACAAGAA  999

seq1  -CCTTGTCTC-AGAGAACAAAAGCAAAATGTGCTGGGTATCAATA-CCAG  1044
       ||||||||| | ||||| |||||  |||||||| ||||||||||  |||
seq2  CCCTTGTCTCAAAAGAAC-AAAGC-GAATGTGCT-GGTATCAATATACAG  1046

seq1  GAGCACCAGGACACTGGTCAGAAGTGTGAATTGTTGGCCTCAGCCAAA  1092
         ||||| ||||||| ||||||||||||| |  ||| ||||||||||
seq2  AGCCACCAAGACACTGTTCAGAAGTGTGAAATTGTGGGCTCAGCCAAA  1094

seq1: chr2_166356153_166356822
seq2: B6Ng01-274C13.g_66_723 (reverse)

seq1  TGTTGGGAGCCGCCCCCACATTTGCCGTCACAAGATGGCGCTGACATCCT  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTTGGGAGCCGCCCCCACATTTGCCGTCATAAGATGGCGCTGACATCCT  50

seq1  GTGTTCTAAGTGGTAAACAAATAATCTGCCCATGTGCCAAGGGTATTTTA  100
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATTTTA  100

seq1  TGACTACTTGTACTCTACCTTTCCCGTGACCGTCAGCTCGGCCATGGGCT  150
       ||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  CGACTACTTGTACTCTGCCTTTCCCGTGAACGTCAGCTCGGCCATGGGCT  150

seq1  GCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAATATAACGCTCCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  GCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAATATAACTCTCCT-AA  199

seq1  AAAGGGGAC-GGGTTTCCGCCATTCTCTCTCGCTGGCATCTCTCTGGCTC  249
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  AAAGGGGACGGGGTTTCCGCCACTCTCTCTCGCTGGCATCTCTCTGGCTC  249

seq1  TGCGCGCCCTGCGCTCGCTCGCTGCCTAAAGATGTAAACAATAGAGCACG  299
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  TGCGCGCCCTGCGCTCTCTCGCTGCCTAAAGATGTAAACAATAGAGCGCG  299

seq1  CTCTACGCTTTGGCGCGCCGGAGCTCTGGCTCCTAAAGAT---ATTATAG  346
      |||| ||||||||| |||||||||||||||||||||||||   |  || |
seq2  CTCTGCGCTTTGGCACGCCGGAGCTCTGGCTCCTAAAGATGTAAGAATTG  349

seq1  AAGGGGTTTTCGCTTTTGGGGTTGGGGTTTTTGCACTCCT-GCTCCTGAA  395
      |||||| |||||||||||||| |||||  ||||| ||||| |||||||||
seq2  AAGGGGCTTTCGCTTTTGGGGCTGGGG-GTTTGCGCTCCTAGCTCCTGAA  398

seq1  GATGTAAGCAATAAAGTTTTGCCGCAGAAGATTTTGGTTTGTTGCGTCTT  445
      ||| ||||||||||||||||||||||||||||| |||| ||||| ||  |
seq2  GATTTAAGCAATAAAGTTTTGCCGCAGAAGATTCTGGTCTGTTGTGTTCT  448

seq1  TCCTGGCCGGTCGCGTGAGAACGCGATTAAGAATTGGTGCCGAAACCCGG  495
      ||||||||||  |||||||||||| |||||||||||||||||||||||||
seq2  TCCTGGCCGG--GCGTGAGAACGCTATTAAGAATTGGTGCCGAAACCCGG  496

seq1  GAAGAGAAATTCCGGGACGAGAAAAAATCCGGGAAGAAAAAACCCGGGAG  545
      || ||||||||||||||||||||||||||||||| |||||||  |   ||
seq2  GACGAGAAATTCCGGGACGAGAAAAAATCCGGGACGAAAAAATAC--AAG  544

seq1  GAAACTCGGGACGGGAGTTTCACCGGCGCAGGGAAGATCCCTCATTCCAG  595
       |||||||||           ||||||||| |||||||||||||||||||
seq2  AAAACTCGGG-----------ACCGGCGCAAGGAAGATCCCTCATTCCAG  583

seq1  AACCAGAACTGCGGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACTGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAACTGCGGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACTGTT  633

seq1  AAGAAGGATTCAACTGCATGAATTC  670
      |||||||||||||||||||||||||
seq2  AAGAAGGATTCAACTGCATGAATTC  658