BAC Information

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BAC

Clone NameB6Ng01-274O13
Chromosome6 (Build37)
Map Location 111,597,408 - 111,745,351
singlet/doubletdoublet
Overlap genenone
Upstream geneGrm7
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274O13.bB6Ng01-274O13.g
ACCGA076088GA076089
length1,1311,152
definitionB6Ng01-274O13.b B6Ng01-274O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,597,408 - 111,598,532)(111,744,199 - 111,745,351)
sequence
ttaaggcatactcagattttgtcattcaaggcaacctccttaaagctggc
atcagtccattctaacaaggtgacttgcagtgtatcatccaagagattaa
gttattgagtcaggacagagatgggtacatgattagagatgtaggccatg
tggtatcagccaacctctagggagaagaaagggactagaaatggagttca
atttcatggctgatgatttaatccattatgcttgcataatgaactcccaa
taaaacctgtggttctgaaagcatgttagagagcttccatgcttagcctt
atactgctgagaccatcaaggtgacagaagggtagagcatctttgtggat
attgaggaccaggaagctgttgggcccctacctcctcttctggctgctgt
catctccatcattttcctgcaataaaatagatggtaaattgctttgctgt
gttttctgagtcataataatgaaggctgagatgtgaggggacagctgact
ctcccaaatatgtagtcagctgaccatagtcatgggaaacctcaatttac
agctggaatgtttctaaagggaagtttctgaggactggacttcctctcca
acataactgagagtattttcagaaatcattacagaagaaaaagaaggagg
aggaggatattgcatgagggttggaaagatgacacattggttaagagaac
atatttttgttttttgccgaaaagctgagtatggatctcagaaccactca
caccccgtttttcatcattgtatgcaactccatctccagggtctccaaca
ccctcctatgaactccaggccttgtgcaatatacttataatgccctcaac
atacacagagatacatataattaaatataatgtcttataaagaaaagaga
aattattgaataaaagaacacataaaggtccgaagattttgaacccaatt
ctagaggcaaagaatgtaatgaacaggagtaaagaatttaataagtatca
ataaaataataatgagaactggaaaagatggctcagtgattgagagcact
gggctgctctttctagaggggtgcaagttctattcccagcatccaccgag
aatgttcacaaaagcctatactccaagtgtg

gaattccactgcaaggaagcctttcttcctttatattcttggagaactga
aagcaaaagcatcaggcaactcaggggtttttgaaatgagaaagtgtgtt
agcattgaagaaaacaaatggacaagctctccacagacatcaactgtcct
tggtgtggtgtgcctttcacttgtaatccaaaaagataaaagaattcctt
gcccagaggaccaaggaaagccagggcactcaggataaaaggactccctc
ttgcccacattagccttttgagtttaaacttctattttgttgaaggtcgt
caaagaaagagtattgcaaactagaatcttagagtaaaatcatctgaaga
atcgtatcttggatatcccgagcttttgggataatatccacctatcagtg
agtacataccatatgtgttcttttgtgattgggttacctctctcaggata
tttcctcgttccatccattgtctaagaatttcatgaagtcattgttttta
atagttcagtaatactccattctgtaaatgtaccacattttctgtatcca
ttcttgtgttgaaggacatgtgggttctttccagcttctgactattataa
ataaggctgctattaacatagtagagcatgtgttcttgttaaacatttga
gcatcttttgggtatatgcccaagagtggtatagctgggtccttgggtag
tactatgtccaattttctgaggaactgccaaactgatttccagagtgttt
gtactagctttcaatcccaccaacaattgaggagtgattctctttctccc
catctttctcagcatctgctgtcacctgagttttttatcttagccatctt
gactggtgtgaggtggaatctcaggatcattttgatttgcatttctctga
tgactaaggatattgaacatttcttctatttttcttttttaagatactgg
ttgctgtgtagcatgattttatttcctcttctcagtaagcctgagtagca
gtattattcctttatacacaaagggcatggagagcagtagtctttcaaca
gctttgggtggagaataagagttgtagccttgcaatatgtcattagcctt
ggaccacgtgtaacatcaagagtgctgttcactaattgaatagtcaagat
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_111597408_111598532
seq2: B6Ng01-274O13.b_55_1185

seq1  TTAAGGCATACTCAGATTTTGTCATTCAAGGCAACCTCCTTAAAGCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCATACTCAGATTTTGTCATTCAAGGCAACCTCCTTAAAGCTGGC  50

seq1  ATCAGTCCATTCTAACAAGGTGACTTGCAGTGTATCATCCAAGAGATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCCATTCTAACAAGGTGACTTGCAGTGTATCATCCAAGAGATTAA  100

seq1  GTTATTGAGTCAGGACAGAGATGGGTACATGATTAGAGATGTAGGCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGAGTCAGGACAGAGATGGGTACATGATTAGAGATGTAGGCCATG  150

seq1  TGGTATCAGCCAACCTCTAGGGAGAAGAAAGGGACTAGAAATGGAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCAGCCAACCTCTAGGGAGAAGAAAGGGACTAGAAATGGAGTTCA  200

seq1  ATTTCATGGCTGATGATTTAATCCATTATGCTTGCATAATGAACTCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGGCTGATGATTTAATCCATTATGCTTGCATAATGAACTCCCAA  250

seq1  TAAAACCTGTGGTTCTGAAAGCATGTTAGAGAGCTTCCATGCTTAGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTGTGGTTCTGAAAGCATGTTAGAGAGCTTCCATGCTTAGCCTT  300

seq1  ATACTGCTGAGACCATCAAGGTGACAGAAGGGTAGAGCATCTTTGTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCTGAGACCATCAAGGTGACAGAAGGGTAGAGCATCTTTGTGGAT  350

seq1  ATTGAGGACCAGGAAGCTGTTGGGCCCCTACCTCCTCTTCTGGCTGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGACCAGGAAGCTGTTGGGCCCCTACCTCCTCTTCTGGCTGCTGT  400

seq1  CATCTCCATCATTTTCCTGCAATAAAATAGATGGTAAATTGCTTTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCATCATTTTCCTGCAATAAAATAGATGGTAAATTGCTTTGCTGT  450

seq1  GTTTTCTGAGTCATAATAATGAAGGCTGAGATGTGAGGGGACAGCTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGAGTCATAATAATGAAGGCTGAGATGTGAGGGGACAGCTGACT  500

seq1  CTCCCAAATATGTAGTCAGCTGACCATAGTCATGGGAAACCTCAATTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAATATGTAGTCAGCTGACCATAGTCATGGGAAACCTCAATTTAC  550

seq1  AGCTGGAATGTTTCTAAAGGGAAGTTTCTGAGGACTGGACTTCCTCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAATGTTTCTAAAGGGAAGTTTCTGAGGACTGGACTTCCTCTCCA  600

seq1  ACATAACTGAGAGTATTTTCAGAAATCATTACAGAAGAAAAAGAAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACTGAGAGTATTTTCAGAAATCATTACAGAAGAAAAAGAAGGAGG  650

seq1  AGGAGGATATTGCATGAGGGTTGGAAAGATGACACATTGGTTAAGAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATATTGCATGAGGGTTGGAAAGATGACACATTGGTTAAGAGAAC  700

seq1  ATATTTTTGTTTTTTGCCGAAAAGCTGAGTATGGATCTCAGAACCACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGTTTTTTGCCGAAAAGCTGAGTATGGATCTCAGAACCACTCA  750

seq1  CACCCCGTTTTTCATCATTGTATGCAACTCCATCTCCAGGGTCTCCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCGTTTTTCATCATTGTATGCAACTCCATCTCCAGGGTCTCCAACA  800

seq1  CCCTCCTATGAACTCCAGGCCTTGTGCAATATACTTATAATGCCCTCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTATGAACTCCAGGCCTTGTGCAATATACTTATAATGCCCTCAAC  850

seq1  ATACACAGAGATACATATAATTAAATATAATGTCTTATAAAGAAAAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGAGATACATATAATTAAATATAATGTCTTATAAAGAAAAGAGA  900

seq1  AATTATTGAATAAAAGAACACATAAAGGTCCGAAGATTTTGAACCCAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGAATAAAAGAACACATAAAGGTCCGAAGATTTTGAACCCAATT  950

seq1  CTAGAGGCAAAGAATGTAATGAACAGGAGTAAAG-ATTTAATAAGGTATC  999
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  CTAGAGGCAAAGAATGTAATGAACAGGAGTAAAGAATTTAATAA-GTATC  999

seq1  AATAAAATAATAATGAGAACTGG-AGAGATGGCTCAGTGATTGAGAGCAC  1048
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  AATAAAATAATAATGAGAACTGGAAAAGATGGCTCAGTGATTGAGAGCAC  1049

seq1  T-GGCTGCTC-TTCTAGA-GGGTGCAAGTTCTATTCCCAGCATCCACCGA  1095
      | |||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  TGGGCTGCTCTTTCTAGAGGGGTGCAAGTTCTATTCCCAGCATCCACCGA  1099

seq1  G-ATGTTCACATA--GCTATAACTCCAAGTGTG  1125
      | ||||||||| |   |||| ||||||||||||
seq2  GAATGTTCACAAAAGCCTAT-ACTCCAAGTGTG  1131


seq1: chr6_111744199_111745351
seq2: B6Ng01-274O13.g_65_1216 (reverse)

seq1  AGATCTTGACTA-TCATTTAGTG-ACAGCCCACTTGATGTTCCACGTGGT  48
      |||||||||||| ||| |||||| ||||| | ||||||||| ||||||||
seq2  AGATCTTGACTATTCAATTAGTGAACAGCACTCTTGATGTTACACGTGGT  50

seq1  CCAAAGCTAATGACATATT-CCAGGCTACAACCTTCTTTATTCTCCACC-  96
      |||| |||||||||||||| | ||||||||||  || |||||||||||| 
seq2  CCAAGGCTAATGACATATTGCAAGGCTACAAC--TC-TTATTCTCCACCC  97

seq1  -AAGCTGTTTAAAGACTACTTGCTCTCCATG-CCTTTGTGTATAAAGGAA  144
       |||||||| ||||||||| ||||||||||| ||||||||||||||||||
seq2  AAAGCTGTTGAAAGACTAC-TGCTCTCCATGCCCTTTGTGTATAAAGGAA  146

seq1  T-ATACTGCCTACCTCAGGCTTACTGAGAAGAGGAAATAAAATCATGCTA  193
      | |||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  TAATACTG-CTA-CTCAGGCTTACTGAGAAGAGGAAATAAAATCATGCTA  194

seq1  CACAGCAACCAGTATCTTAAAAAAAGAAAAATAGAAAGAAATGTTCAATA  243
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  CACAGCAACCAGTATCTT-AAAAAAGAAAAATAG-AAGAAATGTTCAATA  242

seq1  TCCTTAGTCATCAGAGAAATGCAAATCAAAATGATCCTGAGATTCCACCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGTCATCAGAGAAATGCAAATCAAAATGATCCTGAGATTCCACCT  292

seq1  CACACCAGTCAAGATGGCTAAGATAAAAAACTCAGGTGACAGCAGATGCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGTCAAGATGGCTAAGATAAAAAACTCAGGTGACAGCAGATGCT  342

seq1  GAGAAAGATGGGGAGAAAGAGAATCACTCCTCAATTGTTGGTGGGATTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGATGGGGAGAAAGAGAATCACTCCTCAATTGTTGGTGGGATTGA  392

seq1  AAGCTAGTACAAACACTCTGGAAATCAGTTTGGCAGTTCCTCAGAAAATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGTACAAACACTCTGGAAATCAGTTTGGCAGTTCCTCAGAAAATT  442

seq1  GGACATAGTACTACCCAAGGACCCAGCTATACCACTCTTGGGCATATACC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAGTACTACCCAAGGACCCAGCTATACCACTCTTGGGCATATACC  492

seq1  CAAAAGATGCTCAAATGTTTAACAAGAACACATGCTCTACTATGTTAATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATGCTCAAATGTTTAACAAGAACACATGCTCTACTATGTTAATA  542

seq1  GCAGCCTTATTTATAATAGTCAGAAGCTGGAAAGAACCCACATGTCCTTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTATTTATAATAGTCAGAAGCTGGAAAGAACCCACATGTCCTTC  592

seq1  AACACAAGAATGGATACAGAAAATGTGGTACATTTACAGAATGGAGTATT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGAATGGATACAGAAAATGTGGTACATTTACAGAATGGAGTATT  642

seq1  ACTGAACTATTAAAAACAATGACTTCATGAAATTCTTAGACAATGGATGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTATTAAAAACAATGACTTCATGAAATTCTTAGACAATGGATGG  692

seq1  AACGAGGAAATATCCTGAGAGAGGTAACCCAATCACAAAAGAACACATAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGGAAATATCCTGAGAGAGGTAACCCAATCACAAAAGAACACATAT  742

seq1  GGTATGTACTCACTGATAGGTGGATATTATCCCAAAAGCTCGGGATATCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTACTCACTGATAGGTGGATATTATCCCAAAAGCTCGGGATATCC  792

seq1  AAGATACGATTCTTCAGATGATTTTACTCTAAGATTCTAGTTTGCAATAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACGATTCTTCAGATGATTTTACTCTAAGATTCTAGTTTGCAATAC  842

seq1  TCTTTCTTTGACGACCTTCAACAAAATAGAAGTTTAAACTCAAAAGGCTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTGACGACCTTCAACAAAATAGAAGTTTAAACTCAAAAGGCTA  892

seq1  ATGTGGGCAAGAGGGAGTCCTTTTATCCTGAGTGCCCTGGCTTTCCTTGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGCAAGAGGGAGTCCTTTTATCCTGAGTGCCCTGGCTTTCCTTGG  942

seq1  TCCTCTGGGCAAGGAATTCTTTTATCTTTTTGGATTACAAGTGAAAGGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGGCAAGGAATTCTTTTATCTTTTTGGATTACAAGTGAAAGGCA  992

seq1  CACCACACCAAGGACAGTTGATGTCTGTGGAGAGCTTGTCCATTTGTTTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACCAAGGACAGTTGATGTCTGTGGAGAGCTTGTCCATTTGTTTT  1042

seq1  CTTCAATGCTAACACACTTTCTCATTTCAAAAACCCCTGAGTTGCCTGAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGCTAACACACTTTCTCATTTCAAAAACCCCTGAGTTGCCTGAT  1092

seq1  GCTTTTGCTTTCAGTTCTCCAAGAATATAAAGGAAGAAAGGCTTCCTTGC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCTTTCAGTTCTCCAAGAATATAAAGGAAGAAAGGCTTCCTTGC  1142

seq1  AGTGGAATTC  1153
      ||||||||||
seq2  AGTGGAATTC  1152


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