BAC Information

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BAC

Clone NameB6Ng01-275L10
Chromosome6 (Build37)
Map Location 86,458,261 - 86,614,750
singlet/doubletdoublet
Overlap genePcbp1, Asprv1, Mxd1
Upstream geneEgr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik
Downstream gene2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275L10.bB6Ng01-275L10.g
ACCGA076677GA076678
length725290
definitionB6Ng01-275L10.b B6Ng01-275L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,614,030 - 86,614,750)(86,458,261 - 86,458,548)
sequence
gaattcccaaccagagccagttagagcccttttccaaaactgggcttcct
cacccacgcctcgtcatgaagaagctgctttcagatgtagaaggaatcag
gttgacttccatggttatagagaactgtttgtgaagtccaaggcaaggcc
tggtcctcaggggcagccatgagcactaatggttgatttccaacccagca
tgcctttcatctgggccttgccagtcacctttatagctgttccctcattg
atccattcttcttttctagattattggcaattatttgtattcccattttt
aacagaggggttagcccagggcgaggtagtacaattatttcatctacagt
accagagaggacaaagctggcctttttttttatcatctcaactcctgctc
ttgccagcctgctgctgccttcctgttggatttgtaaggccctgctttcc
tcgctgcgctgaggcagcggcctctttgtggaggttgtgcatgaggcatt
tcactcagggagctggggtaggggaggggttttttaccagttaaaatagg
aggttgtaaccaaacagcatcatgtgtttagtgtatgctgcccctaggac
gtaggatgggggtatggtgccacccacatgactttacagataacctaaag
gttgtttttgaaactcctgtgcacatcacactgtaccattgtgttttgta
atttaaccctcttcctctttacaaa
ctcctgcctcagcttccatagttctgggattacagggaccacgcccagtc
agagaaacccgtttactgggaactcacttctaaacatagtttcttttgtt
ttgtttttctctatgtagcctggctgtcctggaactcactctgcagacca
ggctggccttgaactcataaatatgcctgcctctgcctcccaaatctgtg
attaaaggcgtgcaccaccaccacccggtctttttttttttaaagaatta
ttttattttatgtatgtgagcacactgaatctgtcttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_86614030_86614750
seq2: B6Ng01-275L10.b_46_770 (reverse)

seq1  TTTGTAAAGAGGAAGAGGG-TCACTTACAAAACACACTGGTACAGTGTGA  49
      ||||||||||||||||||| | | |||||||||||| |||||||||||||
seq2  TTTGTAAAGAGGAAGAGGGTTAAATTACAAAACACAATGGTACAGTGTGA  50

seq1  TGTGCACTGGAGTTTCATAA--CACCTTTAGGTTATCTGTAAAGTCATGT  97
      ||||||| ||||||||| ||   |||||||||||||||||||||||||||
seq2  TGTGCACAGGAGTTTCAAAAACAACCTTTAGGTTATCTGTAAAGTCATGT  100

seq1  GGGTGGCACCATACCCCCATCCTACGTCCTAGGGGCAGCATACACT-AAC  146
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGTGGCACCATACCCCCATCCTACGTCCTAGGGGCAGCATACACTAAAC  150

seq1  ACATGATGCTGTTTGGTTACAACCTCCTATTTTAACTGGTAAAAAACCCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGCTGTTTGGTTACAACCTCCTATTTTAACTGGTAAAAAACCCC  200

seq1  TCCCCTACCCCAGCTCCCTGAGTGAAATGCCTCATGCACAACCTCCACAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACCCCAGCTCCCTGAGTGAAATGCCTCATGCACAACCTCCACAA  250

seq1  AGAGGCCGCTGCCTCAGCGCAGCGAGGAAAGCAGGGCCTTACAAATCCAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCGCTGCCTCAGCGCAGCGAGGAAAGCAGGGCCTTACAAATCCAA  300

seq1  CAGGAAGGCAGCAGCAGGCTGGCAAGAGCAGGAGTTGAGATGATAAAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGCAGCAGCAGGCTGGCAAGAGCAGGAGTTGAGATGATAAAAAA  350

seq1  AAAGGCCAGCTTTGTCCTCTCTGGTACTGTAGATGAAATAATTGTACTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAGCTTTGTCCTCTCTGGTACTGTAGATGAAATAATTGTACTAC  400

seq1  CTCGCCCTGGGCTAACCCCTCTGTTAAAAATGGGAATACAAATAATTGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCCTGGGCTAACCCCTCTGTTAAAAATGGGAATACAAATAATTGCC  450

seq1  AATAATCTAGAAAAGAAGAATGGATCAATGAGGGAACAGCTATAAAGGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCTAGAAAAGAAGAATGGATCAATGAGGGAACAGCTATAAAGGTG  500

seq1  ACTGGCAAGGCCCAGATGAAAGGCATGCTGGGTTGGAAATCAACCATTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAAGGCCCAGATGAAAGGCATGCTGGGTTGGAAATCAACCATTAG  550

seq1  TGCTCATGGCTGCCCCTGAGGACCAGGCCTTGCCTTGGACTTCACAAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGGCTGCCCCTGAGGACCAGGCCTTGCCTTGGACTTCACAAACA  600

seq1  GTTCTCTATAACCATGGAAGTCAACCTGATTCCTTCTACATCTGAAAGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTATAACCATGGAAGTCAACCTGATTCCTTCTACATCTGAAAGCA  650

seq1  GCTTCTTCATGACGAGGCGTGGGTGAGGAAGCCCAGTTTTGGAAAAGGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCATGACGAGGCGTGGGTGAGGAAGCCCAGTTTTGGAAAAGGGC  700

seq1  TCTAACTGGCTCTGGTTGGGAATTC  721
      |||||||||||||||||||||||||
seq2  TCTAACTGGCTCTGGTTGGGAATTC  725

seq1: chr6_86458261_86458548
seq2: B6Ng01-275L10.g_72_360

seq1  CTCCTGCCTCAGCTTCCATAGTTCTGGGATTACAGGGACCACGCCCAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTCAGCTTCCATAGTTCTGGGATTACAGGGACCACGCCCAGTC  50

seq1  AGAGAAACCCGTTTACTGGGAACTCACTTCTAAACATAGTTTCTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCGTTTACTGGGAACTCACTTCTAAACATAGTTTCTTTTGTT  100

seq1  TTGTTTTTCTCTATGTAGCCTGGCTGTCCTGGAACTCACTCTGCAGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTCTATGTAGCCTGGCTGTCCTGGAACTCACTCTGCAGACCA  150

seq1  GGCTGGCCTTGAACTCAGAAATATGCCTGCCTCTGCCTCCCAAATCTGTG  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTTGAACTCATAAATATGCCTGCCTCTGCCTCCCAAATCTGTG  200

seq1  ATTAAAGGCGTGCACCACCACCACCCGGCCTTTTTTTTTTTAAAGAATTA  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTAAAGGCGTGCACCACCACCACCCGGTCTTTTTTTTTTTAAAGAATTA  250

seq1  -TTTATTTTATGTATGTGAGCACACTGTAGCTGTCTTCA  288
       |||||||||||||||||||||||||| | |||||||||
seq2  TTTTATTTTATGTATGTGAGCACACTGAATCTGTCTTCA  289