BAC Information

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BAC

Clone NameB6Ng01-278L16
Chromosome6 (Build37)10 (Build37)
Map Location 130,081,756 - 130,082,48622,251,291 - 22,251,736
singlet/doubletsingletsinglet
Overlap geneLOC100038894
Upstream geneClec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8
Downstream geneEG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278L16.bB6Ng01-278L16.g
ACCGA078897GA078898
length1,0551,162
definitionB6Ng01-278L16.b B6Ng01-278L16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(130,081,756 - 130,082,486)(22,251,291 - 22,251,736)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatctgatt
ttctggagtccaccttcttcagttctttatatatattagatcttagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggcct
ttttgtcttattgacagtgtcctttgcctgacagaagctttgcaatttta
tgaggtcccatttgtcaactctcaatcttacagctcaagcccttgctgtt
ctattcaggaattttttccctgtgcccatatattctctggttttatgtgg
agttccttgatccacttaggtttgaccttattacaaggaaataggaatga
attaattcccattcttctacatgataactgccagctgtgccagcaccatt
tgtataaaatgctgtcttttttccaccggatagttttagctcccttatca
aaaatcaagtgaccataggtgtgtgggttcatttctgggtcttcaattca
gttccattggtctacctgtatgtggatatacaagtaccatgcagttttta
tcacaattgctctgtattacagctttagttcaggcatggtgattccacca
gaggttcttatatccttgagaagagtttttgctatcctaggttttttgtt
attccaggtgaatttgcagatcactctttctaatttgttgaagaattgag
ttggaattttgatggggattgcattgaatctgtagcatccttctggccac
atagccatttttactagaatgatcctgccaacccatgagaatgggagatc
ccatgctcgtaattttttaatttagtgctggaaatctcttatgcttctat
ttttaatactttctttgttttaattcatgctaattgcatctaattatgta
ttagaaatgccgttagaacacatttccactggtaaagtcttcctttacac
tagtcaagcttttttttttaatctttttttttaatttttaaactccacag
tttttttattaggttttttcctcgttacattttcatgctatctccaagtt
gtccc
gaattctctgtttagttgaggtgtagaagatacaacagaagaaattgatt
ctttagtcaaagaaaatgctaaatataaaaaattcatgacacaaaacaac
caggaaatctgggataccttgaaaatatctatcctagaattaataggaat
agaggaagttaaagagcccaattctaaattcacaaatattttcaacaaaa
tcatagaagcaaacattccaaacctaaagaaagagatgccaataaacata
gaaggttttagaaccccaattagactgggccagaaaagaaaatcctccca
tcatataataatcaaaatacaaaatctccagaggaaagaaagaatattaa
aagcaacaaggtaaaaatggtagctaacatacaaaggcataacgaccaga
attttacccaacttctccatagactcaaaaagtgaaaatagtctgggcag
atttcttccaacttatgacaaaccgtaattgacaatgtagcctattgtac
ccagtaaaactctcaatcaccatagatgtagaaaagaaaatattttaaga
caaatccaaattcaaacgatatctatccacaaatccagctatatagaaaa
tacaagaaggaaaaattcaacctaacatgataaataatggtatacaggaa
aacacagtagataagtaaattcataccagcaaaaatgaggaaatcacaca
gaagcacacacacacacacacacacacacacacacacacacacacaaaga
gagagagagagagagagagagagagagagagagagagagagaacatttaa
atttaaacacattcatattttaaaatataattactcaattaattaggcat
aaagtcggttcaagtgtcacatgtaaaatacactaaatactggcaaatat
ctccatatatcctcagtactgtcacttctgcatccttcccggagcatgga
tcttaatgcacagtgttttaacagagcaatgttcatctttaataaaatct
tcttggaagaacagggcattaatttccaaacgaacactttggcaaattct
tatgaagtacttcagaatcacatttgacttaattcatagaagtaattaag
aaagtcttcatgatcttataaacttttaagtcttggaacagagaatattt
gttccaagatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_130081756_130082486
seq2: B6Ng01-278L16.b_367_1096

seq1  CCTTATTACAAGGAAATAGGAATGAATTAATTCCCATTCTTCTACATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTACAAGGAAATAGGAATGAATTAATTCCCATTCTTCTACATGAT  50

seq1  AACTGCCAGCTGTGCCAGCACCATTTGTATAAAATGCTGTCTTTTTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCAGCTGTGCCAGCACCATTTGTATAAAATGCTGTCTTTTTTCCA  100

seq1  CCGGATAGTTTTAGCTCCCTTATCAAAAATCAAGTGACCATAGGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATAGTTTTAGCTCCCTTATCAAAAATCAAGTGACCATAGGTGTGTG  150

seq1  GGTTCATTTCTGGGTCTTCAATTCAGTTCCATTGGTCTACCTGTATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTTCTGGGTCTTCAATTCAGTTCCATTGGTCTACCTGTATGTGG  200

seq1  ATATACAAGTACCATGCAGTTTTTATCACAATTGCTCTGTATTACAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAAGTACCATGCAGTTTTTATCACAATTGCTCTGTATTACAGCTT  250

seq1  TAGTTCAGGCATGGTGATTCCACCAGAGGTTCTTATATCCTTGAGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAGGCATGGTGATTCCACCAGAGGTTCTTATATCCTTGAGAAGAG  300

seq1  TTTTTGCTATCCTAGGTTTTTTGTTATTCCAGGTGAATTTGCAGATCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTATCCTAGGTTTTTTGTTATTCCAGGTGAATTTGCAGATCACT  350

seq1  CTTTCTAATTTGTTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAATTTGTTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATT  400

seq1  GAATCTGTAGCATCCTTCTGGCCACATAGCCATTTTTACTAGAATGATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTAGCATCCTTCTGGCCACATAGCCATTTTTACTAGAATGATCC  450

seq1  TGCCAACCCATGAGAATGGGAGATCCCATGCTCGTAATTTTTTAATTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACCCATGAGAATGGGAGATCCCATGCTCGTAATTTTTTAATTTAG  500

seq1  TGCTGGAAATCTCTTATGCTTCTATTTTTAATAC-TTCTTTGTTTTAATT  549
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGCTGGAAATCTCTTATGCTTCTATTTTTAATACTTTCTTTGTTTTAATT  550

seq1  CATGCTAATTGCATCTAATTATGTATTAGAAATGCCGTTAGAACACATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAATTGCATCTAATTATGTATTAGAAATGCCGTTAGAACACATTT  600

seq1  CCACTGGTAAAGTCTTCCTTTACACTAGTCAAGC-TTTTTTTTTAATCTT  648
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCACTGGTAAAGTCTTCCTTTACACTAGTCAAGCTTTTTTTTTTAATCTT  650

seq1  TTTTTTTTAATTTTTTAAACTCCACATTTTTTTTAATTAGGTATTTTCCT  698
      |||||||  | ||||||||||||||| ||||||| ||||||| |||||||
seq2  TTTTTTT--AATTTTTAAACTCCACAGTTTTTTT-ATTAGGTTTTTTCCT  697

seq1  CGTTTACATTTTCAATGCTATC-CCAAG-TGTCCC  731
      || |||||||||| |||||||| ||||| ||||||
seq2  CG-TTACATTTTC-ATGCTATCTCCAAGTTGTCCC  730

seq1: chr10_22251291_22251736
seq2: B6Ng01-278L16.g_813_1227

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA---T  47
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACATT  50

seq1  GAGAT-----CAGTGTCTTGGAGTTTGATTGCTGTGAAGAAACCCCATGA  92
       | ||     ||   || |  | ||| |      |  |   || | || |
seq2  TAAATTTAAACACATTCAT--ATTTTAA----AATATAATTACTCAATTA  94

seq1  CCAAGGC---AACTCTTATAAAGGACAACATTTAA-------TTGGGGCT  132
         ||||   || ||   | |||    |||| |||       |     ||
seq2  ATTAGGCATAAAGTCGGTTCAAGTGTCACATGTAAAATACACTAAATACT  144

seq1  GGCTGAGGTTCAGTCCAT-TATCATCA-TGGTGGGAAGCATGGCACATGC  180
      |||  |   |   ||||| |||| ||| |  ||  |    ||   | | |
seq2  GGCAAA---TATCTCCATATATCCTCAGTACTGTCACTTCTGCATCCTTC  191

seq1  AGGCAGACATTGTGCTGGAGTTGCTTAGAGTTTTATACCTTGATCCAAAG  230
        | || ||| |  ||  |  |||  || |||||| ||   || | |   
seq2  CCGGAG-CATGGATCTTAA--TGCACAGTGTTTTA-AC--AGAGCAATGT  235

seq1  GCAGCCAGGAGGAGACTCTCTTCTACATTGGGTG----GAGCTTGAGTAT  276
       || |    |  | |   |||||    ||||  |    | || | | | |
seq2  TCATCTTTAATAAAA---TCTTC----TTGGAAGAACAGGGCATTAATTT  278

seq1  CAGGAGACCAAC-CACACAGTGACACACT---------TCCTTC--AATA  314
      |      | |||  ||||  || || | |         | ||||  ||| 
seq2  C------CAAACGAACACTTTGGCAAATTCTTATGAAGTACTTCAGAATC  322

seq1  AGGCTACACCT-TTTCCAACAAGGCTACACCCCCTAAAAGTGTCACTTCC  363
      |   |  || |  |||  | |||  ||       ||| |  ||  |||  
seq2  ACATTTGACTTAATTCATAGAAG--TA-----ATTAAGAAAGT--CTT--  361

seq1  CATGGGCCAAGCATATTCAAACCACCACAACCACTAAGGCATTGTGCTAG  413
      ||||     | | |||            |||   |||| | |||     |
seq2  CATG-----ATCTTAT-----------AAACTTTTAAGTC-TTG-----G  389

seq1  ATCTACAGCTAAAGTGGATTTGTTCCAAGATGG  446
      |   ||||    ||   ||||||||||||||||
seq2  A---ACAG----AGAATATTTGTTCCAAGATGG  415