BAC Information

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BAC

Clone NameB6Ng01-279H15
Chromosome6 (Build37)
Map Location 145,635,497 - 145,772,080
singlet/doubletdoublet
Overlap geneRassf8
Upstream gene4933425H06Rik, EG665149, Bcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b
Downstream geneBhlhb3, Sspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279H15.bB6Ng01-279H15.g
ACCGA079449GA079450
length9121,165
definitionB6Ng01-279H15.b B6Ng01-279H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,771,174 - 145,772,080)(145,635,497 - 145,636,647)
sequence
gaattctgaagtgagtctattgagaaataaaaactcacccacctccaact
tgagtgtctgtgtctaacattcatgtcagatatgcaagcaggaaaaggca
gagatcagatctttgaatatgctgattcctgaccctggctgtgaggcaag
gccacagggtcataggccaagcaggaccttctgtggataggcagattgct
tgcaccaatgagatgacaaagcgtcagagtgggaggggtgtgggtgagaa
ggggccaggcctcagtccgctgctggcaggcctctccttacatccccacc
actgtgctgttgccaggagactgaagaaggggccaggccacatggagtgc
agtgcggaatgtgtgagaatgtgcaacctgtggtctcatgagtccacgtg
atctgacatgggcgaggactcactttctcttttgcagaggacaggacgca
cccacagatctgtcttttaatacaacttatctctctccaaggcacatata
tgtacccgtgcccaaaacagggacgagaaaagcaacatgaagccctccct
gttcacctggcaacttaaaaccacctgtaactccagttccaggggatcta
acacatgttcctctctagcctctgttggcatcaggcacacacatggtgta
tatacatacatgcaggcacaaaattcatacacataaaattaaatatatat
caaatatacattatataaaatacacaaatatatattatataaatagaaat
atataatctataaaaataaatatattaatatatttttaaaaggctgtctt
atttcacttagtaacaagtgctcctttcgtgcatctttgtcatcctaaaa
tattctcaagaagatgctacagtatgccaccagcccacttagcatcagag
aggtcccatgga
gaattccacaggacactagtgaaagagagtatatagggagagtggaaacc
ctgagagactcccagctgaccgtgctccaggcccaggttcagctgggagt
ccagttgctgggagtgggttcctcactggtgctgggcaggtcatttccta
ggaatctcatgcccattgtctcaagtccactccaccaaactgcaggttga
cttctccagaaagcagaagctaatctaagattgctgtgcacgcatgctac
agagagtctgtgggggtttgagaaaattgtgcagggacctcctaggcttg
gcgttgccgctaaagctagtgggcgtggcctctaaggctagcaggcgtgg
cctctaaggctagtgggtgagcggctttctactgagcatctcactggtcc
tcttcctttgttttgtttgctttgttttgttttaaatcttccaattcctt
ccaaagacactgtaacctaacttcaaagtcttcctttgaagttagaaatt
ttgtagcttgggcaaggttaccactctctcatctttgtatgtcctagcat
tgaatgaacattttcctagcaagcacttatgggagagagttccttctgtc
ttaaaattgtagttttatctaagttagatacctctgccttcctatgacct
tttaaaaattattttctatagtttctgtgcatcaatttcaactgcctccc
tgtgttcttcgtacattctgattattgtctttttcttttctctcctccct
ccctccctcctctgcctcttctctctctctctgtctctctgtctctctgt
ctctgtctctctctctctcacacacatgtttttccccccatgttcttcta
tcactatgtacaaagagatatccttacagtgacggtttcacacacacaca
cacatatcattcggctttgttctttttctcctcggtgtcccctctttccc
tttcctttccagaaaaaaataccaccccctctctcaaaatatggtaacca
atgcaagaccatttttctacttcacagaattcatttgacttgaattcatc
aacagttgagtagctgcacacaagtacgcagctttagctccagcaagaag
ccaagtggcctaaggcagaaggcacagaacgaacaacaacagcctgtaaa
aggacgcatactaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_145771174_145772080
seq2: B6Ng01-279H15.b_46_955 (reverse)

seq1  CATGGGAACCTCTCTGATG-TGAGTGGGCT-GTGGAATACTGTAGCATCT  48
      |||||| |||||||||||| | |||||||| |||| ||||||||||||||
seq2  CATGGG-ACCTCTCTGATGCTAAGTGGGCTGGTGGCATACTGTAGCATCT  49

seq1  TCTTGAGAATATTTTAGGGTGGCAAGGTTGCACGTAAGG-GCACTTGTTA  97
      |||||||||||||||||| || ||| | |||||| |||| ||||||||||
seq2  TCTTGAGAATATTTTAGGATGACAAAGATGCACGAAAGGAGCACTTGTTA  99

seq1  CTAAGTGAAATAAGACAGCCTTTT-AAAATATATTTATATATTTATTTTT  146
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  CTAAGTGAAATAAGACAGCCTTTTAAAAATATATTAATATATTTATTTTT  149

seq1  ATAGATTATATATTTTTATTTATATAATATATATTTGTGTATTTTATATA  196
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATAGATTATATATTTCTATTTATATAATATATATTTGTGTATTTTATATA  199

seq1  ATGTATATTTGATATATATTTAATTTTATGTGTATGAATTTTGTGCCTGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATTTGATATATATTTAATTTTATGTGTATGAATTTTGTGCCTGC  249

seq1  ATGTATGTATATACACCATGTGTGTGCCTGATGCCAACAGAGGCTAGAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATATACACCATGTGTGTGCCTGATGCCAACAGAGGCTAGAGA  299

seq1  GGAACATGTGTTAGATCCCCTGGAACTGGAGTTACAGGTGGTTTTAAGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGTGTTAGATCCCCTGGAACTGGAGTTACAGGTGGTTTTAAGTT  349

seq1  GCCAGGTGAACAGGGAGGGCTTCATGTTGCTTTTCTCGTCCCTGTTTTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTGAACAGGGAGGGCTTCATGTTGCTTTTCTCGTCCCTGTTTTGG  399

seq1  GCACGGGTACATATATGTGCCTTGGAGAGAGATAAGTTGTATTAAAAGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGGTACATATATGTGCCTTGGAGAGAGATAAGTTGTATTAAAAGAC  449

seq1  AGATCTGTGGGTGCGTCCTGTCCTCTGCAAAAGAGAAAGTGAGTCCTCGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTGGGTGCGTCCTGTCCTCTGCAAAAGAGAAAGTGAGTCCTCGC  499

seq1  CCATGTCAGATCACGTGGACTCATGAGACCACAGGTTGCACATTCTCACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCAGATCACGTGGACTCATGAGACCACAGGTTGCACATTCTCACA  549

seq1  CATTCCGCACTGCACTCCATGTGGCCTGGCCCCTTCTTCAGTCTCCTGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCGCACTGCACTCCATGTGGCCTGGCCCCTTCTTCAGTCTCCTGGC  599

seq1  AACAGCACAGTGGTGGGGATGTAAGGAGAGGCCTGCCAGCAGCGGACTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACAGTGGTGGGGATGTAAGGAGAGGCCTGCCAGCAGCGGACTGA  649

seq1  GGCCTGGCCCCTTCTCACCCACACCCCTCCCACTCTGACGCTTTGTCATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCCCCTTCTCACCCACACCCCTCCCACTCTGACGCTTTGTCATC  699

seq1  TCATTGGTGCAAGCAATCTGCCTATCCACAGAAGGTCCTGCTTGGCCTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGTGCAAGCAATCTGCCTATCCACAGAAGGTCCTGCTTGGCCTAT  749

seq1  GACCCTGTGGCCTTGCCTCACAGCCAGGGTCAGGAATCAGCATATTCAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTGGCCTTGCCTCACAGCCAGGGTCAGGAATCAGCATATTCAAA  799

seq1  GATCTGATCTCTGCCTTTTCCTGCTTGCATATCTGACATGAATGTTAGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATCTCTGCCTTTTCCTGCTTGCATATCTGACATGAATGTTAGAC  849

seq1  ACAGACACTCAAGTTGGAGGTGGGTGAGTTTTTATTTCTCAATAGACTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACTCAAGTTGGAGGTGGGTGAGTTTTTATTTCTCAATAGACTCA  899

seq1  CTTCAGAATTC  907
      |||||||||||
seq2  CTTCAGAATTC  910

seq1: chr6_145635497_145636647
seq2: B6Ng01-279H15.g_67_1231

seq1  GAATTCCACAGGACACTAGTGAAAGAGAGTATATAGGGAGAGTGGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGACACTAGTGAAAGAGAGTATATAGGGAGAGTGGAAACC  50

seq1  CTGAGAGACTCCCAGCTGACCGTGCTCCAGGCCCAGGTTCAGCTGGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGACTCCCAGCTGACCGTGCTCCAGGCCCAGGTTCAGCTGGGAGT  100

seq1  CCAGTTGCTGGGAGTGGGTTCCTCACTGGTGCTGGGCAGGTCATTTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGCTGGGAGTGGGTTCCTCACTGGTGCTGGGCAGGTCATTTCCTA  150

seq1  GGAATCTCATGCCCATTGTCTCAAGTCCACTCCACCAAACTGCAGGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTCATGCCCATTGTCTCAAGTCCACTCCACCAAACTGCAGGTTGA  200

seq1  CTTCTCCAGAAAGCAGAAGCTAATCTAAGATTGCTGTGCACGCATGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCAGAAAGCAGAAGCTAATCTAAGATTGCTGTGCACGCATGCTAC  250

seq1  AGAGAGTCTGTGGGGGTTTGAGAAAATTGTGCAGGGACCTCCTAGGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCTGTGGGGGTTTGAGAAAATTGTGCAGGGACCTCCTAGGCTTG  300

seq1  GCGTTGCCGCTAAAGCTAGTGGGCGTGGCCTCTAAGGCTAGCAGGCGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGCCGCTAAAGCTAGTGGGCGTGGCCTCTAAGGCTAGCAGGCGTGG  350

seq1  CCTCTAAGGCTAGTGGGTGAGCGGCTTTCTACTGAGCATCTCACTGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAGGCTAGTGGGTGAGCGGCTTTCTACTGAGCATCTCACTGGTCC  400

seq1  TCTTCCTTTGTTTTGTTTGCTTTGTTTTGTTTTAAATCTTCCAATTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTGTTTTGTTTGCTTTGTTTTGTTTTAAATCTTCCAATTCCTT  450

seq1  CCAAAGACACTGTAACCTAACTTCAAAGTCTTCCTTTGAAGTTAGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGACACTGTAACCTAACTTCAAAGTCTTCCTTTGAAGTTAGAAATT  500

seq1  TTGTAGCTTGGGCAAGGTTACCACTCTCTCATCTTTGTATGTCCTAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTTGGGCAAGGTTACCACTCTCTCATCTTTGTATGTCCTAGCAT  550

seq1  TGAATGAACATTTTCCTAGCAAGCACTTATGGGAGAGAGTTCCTTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAACATTTTCCTAGCAAGCACTTATGGGAGAGAGTTCCTTCTGTC  600

seq1  TTAAAATTGTAGTTTTATCTAAGTTAGATACCTCTGCCTTCCTATGACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTGTAGTTTTATCTAAGTTAGATACCTCTGCCTTCCTATGACCT  650

seq1  TTTAAAAATTATTTTCTATAGTTTCTGTGCATCAATTTCAACTGCCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATTATTTTCTATAGTTTCTGTGCATCAATTTCAACTGCCTCCC  700

seq1  TGTGTTCTTCGTACATTCTGATTATTGTCTTTTTCTTTTCTCTCCTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTCGTACATTCTGATTATTGTCTTTTTCTTTTCTCTCCTCCCT  750

seq1  CCCTCCCTCCTCTGCCTCTTCTCTCTCTCTCTGTCTCTCTGTCTCTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTCCTCTGCCTCTTCTCTCTCTCTCTGTCTCTCTGTCTCTCTGT  800

seq1  CTCTGTCTCTCTCTCTCTCACACACATGTTTTTCCCCCCATGTTCTTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTCTCTCTCTCACACACATGTTTTTCCCCCCATGTTCTTCTA  850

seq1  TCACTATGTACAAAGAGATATCCTTACAGTGACGGTTTCACACACACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGTACAAAGAGATATCCTTACAGTGACGGTTTCACACACACACA  900

seq1  CACATATCATTCGGCTTTGTTC-TTTTCTCCTC-GTGTCCCCTCTTTCCC  948
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  CACATATCATTCGGCTTTGTTCTTTTTCTCCTCGGTGTCCCCTCTTTCCC  950

seq1  TT--CCTTCCAG--AAAAATACCACCCCC-CCCCCAAAATAT-GTAACC-  991
      ||  | ||||||  ||||||||||||||| | | |||||||| |||||| 
seq2  TTTCCTTTCCAGAAAAAAATACCACCCCCTCTCTCAAAATATGGTAACCA  1000

seq1  ATGCAAGACCA-TTTTCTACTTCACAG-ATTCATTTGACTTGATTCAATC  1039
      ||||||||||| ||||||||||||||| ||||||||||||||| |  || 
seq2  ATGCAAGACCATTTTTCTACTTCACAGAATTCATTTGACTTGAATTCAT-  1049

seq1  CAACAGTTGAGTAGCTGCACACAGTAAGGCAGGCTTAGCTCCAGCAAG-A  1088
      |||||||||||||||||||||||   | ||||  |||||||||||||| |
seq2  CAACAGTTGAGTAGCTGCACACAAGTACGCAGCTTTAGCTCCAGCAAGAA  1099

seq1  GGCAAGTGGC--TAGGCAG-AGGCACAGGACAGAGAACAACAGCCCTGTT  1135
      | ||||||||   |||||| |||||||| ||  | |||||||| ||||| 
seq2  GCCAAGTGGCCTAAGGCAGAAGGCACAGAACGAACAACAACAG-CCTGTA  1148

seq1  AGAGGACGC-TACTAGA  1151
      | ||||||| |||||||
seq2  AAAGGACGCATACTAGA  1165