BAC Information

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BAC

Clone NameB6Ng01-280N05
Chromosome6 (Build37)
Map Location 41,209,526 - 41,210,172
singlet/doubletsinglet
Overlap genenone
Upstream geneAgk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333
Downstream geneTry4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280N05.bB6Ng01-280N05.g
ACCGA080457GA080458
length1,141983
definitionB6Ng01-280N05.b B6Ng01-280N05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttagctctgtacttcatttttaatagggttatttggttc
tctagagtttaacatctcgagttctttgtatatattgaatattagccctc
gatcagatgtagggttggtaaggatcttttcccaatctcttggctgccat
ttttcctattgacagtgtccttagccttacagaagctttgcaattttatg
aagtcctgtttgtcaattcttgatattagagcataggctattggtgttct
cttgaggaaaatttcccctgtgcccatgtgcttgaggctcttccccactt
tcttttctattattttcagtatatctgattttatgtagaggtccttgatc
cacttggacttgagctttgtacaaggtgttaagaatggatccatttgcat
tctgagattccacctcacaccagtcagaatggctaagatcaaaaattcag
gtgatagcagatgctggcaagaatgaagagaaagaggaacactcctccat
tgctggtgggattgcaagcaggtacagtcactcaagaaatgagtttgttg
gttcttcagaaaattgggcctagtactacctgaggacgcagctataccac
tcctgagtatataaccagaagatgctccaacatgtaataaggacacaact
atgttcatagcagccttatttataatagccagaagctggaaagaactcag
atgtccttcagcagaggaatggataaagaaaatgtggtccatttacacaa
tggagtattactcagctattaaaaatgatgaactcataaagcgtttaggc
aaatcaacagaactagaaaatatcctgaatgaggtaacccaatcacaaaa
gaacacacatgatattcactcactgataagtggatattagcccagaagtt
cagaatagccaagaaacaattcacagaccacctgaagctcagaagaagga
agaccagtgtgataattctgtccttcttagaatggatcaaataccatgga
agagatacagagacaaatttggagcagaactgagaagtccctcagagact
gcccactggatccatccatatacagtcatcaaaccagacactaatgtgat
gcacatgctactgacgagagcctgaatatagctggtctctg
gaattcttcctatgagaacagcccctctctgaggtaaaaatgactagaaa
gacacttgatgaaatgtaaatttgatctgtaatgaaatattttcaggaat
ggaacaagctatagcaataaattaaatttgctcttagaagtggcattatc
tgatgaaaaccctagtttatctctttgcctttccttggactacttcctag
catagccttgccttcttttgcttgcttggaaatggggttgtgaaatgctt
ttctatggctggtgtaataaatcactgtaaaattaatatcataaaacact
aatcacaaagctaccatgtgtggagagccgtgagcaatcgccatcatgag
cctccgctgtgcctaactggtaaacaagtaatgtgcgcaggtgcaagagt
aaattcgtgccaagtcactgcccattccggggtgtagtagtggggtgatg
agtgagcagctaatcagaagttgacacgtcacacggaggggtatataagc
agcaccagtttccttgttcggggtcttccttcagatgaagcaataaagct
ttgccgtagaagaatccagttgtctgagtgaattcttgctggcgagatac
tagctcgggataaccatgtagaatactacagattagaaattaagtataat
tcttgttggatttatatcaagaggcaggaaggattatcttttgatttgag
tatccatgggataatctgtccccttacctttagagaccactgcctttctc
tggttgctcttatttatcttcaaagaaagcaacatcacactaaccatagt
cactgttaaagacatgaatgtttaggctgagtccagctatacaatccaaa
acaataatcttgttgtattgagttagctgaacacttaattacacctcaac
acttcattctctttttctatataaagtaatgtattcatagttactgagta
ataggaggtagatatttttggagccattatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_41209526_41210172
seq2: B6Ng01-280N05.g_67_713 (reverse)

seq1  ATACTTAATTTCTAATCTGTAGTATTCTACATGGTTATCCCGAGCTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAATTTCTAATCTGTAGTATTCTACATGGTTATCCCGAGCTAGTA  50

seq1  TCTCGCCAGCAAGAATTCACTCAGACAACTGGATTCTTCTACGGCAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCCAGCAAGAATTCACTCAGACAACTGGATTCTTCTACGGCAAAGC  100

seq1  TTTATTGCTTCATCTGAAGGAAGACCCCGAACAAGGAAACTGGTGCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCTTCATCTGAAGGAAGACCCCGAACAAGGAAACTGGTGCTGCT  150

seq1  TATATACCCCTCCGTGTGACGTGTCAACTTCTGATTAGCTGCTCACTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACCCCTCCGTGTGACGTGTCAACTTCTGATTAGCTGCTCACTCAT  200

seq1  CACCCCACTACTACACCCCGGAATGGGCAGTGACTTGGCACGAATTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACTACTACACCCCGGAATGGGCAGTGACTTGGCACGAATTTACT  250

seq1  CTTGCACCTGCGCACATTACTTGTTTACCAGTTAGGCACAGCGGAGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACCTGCGCACATTACTTGTTTACCAGTTAGGCACAGCGGAGGCTC  300

seq1  ATGATGGCGATTGCTCACGGCTCTCCACACATGGTAGCTTTGTGATTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGCGATTGCTCACGGCTCTCCACACATGGTAGCTTTGTGATTAGT  350

seq1  GTTTTATGATATTAATTTTACAGTGATTTATTACACCAGCCATAGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGATATTAATTTTACAGTGATTTATTACACCAGCCATAGAAAAG  400

seq1  CATTTCACAACCCCATTTCCAAGCAAGCAAAAGAAGGCAAGGCTATGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACAACCCCATTTCCAAGCAAGCAAAAGAAGGCAAGGCTATGCTA  450

seq1  GGAAGTAGTCCAAGGAAAGGCAAAGAGATAAACTAGGGTTTTCATCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGTCCAAGGAAAGGCAAAGAGATAAACTAGGGTTTTCATCAGAT  500

seq1  AATGCCACTTCTAAGAGCAAATTTAATTTATTGCTATAGCTTGTTCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACTTCTAAGAGCAAATTTAATTTATTGCTATAGCTTGTTCCATT  550

seq1  CCTGAAAATATTTCATTACAGATCAAATTTACATTTCATCAAGTGTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAATATTTCATTACAGATCAAATTTACATTTCATCAAGTGTCTTT  600

seq1  CTAGTCATTTTTACCTCAGAGAGGGGCTGTTCTCATAGGAAGAATTC  647
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCATTTTTACCTCAGAGAGGGGCTGTTCTCATAGGAAGAATTC  647