BAC Information

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BAC

Clone NameB6Ng01-281F23
Chromosome6 (Build37)11 (Build37)
Map Location 74,182,433 - 74,183,61422,960,370 - 22,960,516
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSuclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
Downstream geneEG668132, LOC668136
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281F23.bB6Ng01-281F23.g
ACCGA080868GA080869
length1,193810
definitionB6Ng01-281F23.b B6Ng01-281F23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,182,433 - 74,183,614)(22,960,370 - 22,960,516)
sequence
gaattcaataaactaatatttttccagaccccccgagaaagaatttctat
aatatatcaaggtaaacaagtgttctgaagctaaaagtgttcctatttct
ttctgtctctgtctctattttaaactattttttaaaaattaaaaatattt
atctttaatgttttttacagtccagtcattatctccctcccaatcattcc
tcctcccattctactcccaccccttgtcttcaagaggatatccctatctt
cctctccactctactccccccatatttacacccacaaatatcaaacaaca
aagaaattacccttggtcattcttatttttagatctcaggatagcacata
gttattgccaacatagcaataattttaatgatatacattaaaagtttaaa
agtcagaggttgtcatggtagttcaaaaatcctatattttagaatttccc
caattccaaattgttagaaactggcaagactcaggtatccttcaccacta
aggtgtacaatacactaaaatcagaatatattttacttctaagttacact
gtcagtttgttgttgagcctacatttcagaaacacccaatcttgtgtaat
gggtgaaaatttgagatagaagttatgtcatccattttgagatctattgc
tgttacttactttaaaaacccactaaccattgccttggaaaatggcttag
tgtgttaagttcttgttctgtaagttgaatgacctgatattgaatcctca
gagatcatgtaaacccccgtactatcacacataagccttattccctgtct
ttccaatgtgagaagaatggtagaaagaattcctagaagctctctggcca
gttagttttgtacatagcaggtagcaaagaccttgcttcagaaaaggtaa
aagggccgatgttggcttctgaaatctatgtgtgcattttgggcattcaa
ttcccacatgtatatatacactggcactaactatcattaaatacattggt
tgcttttcttataaatcatgggtaagggaaataaataaatattggaggag
ggtttcatgaaggaatcaaatcctattagcaaaatggtgatgagggcaag
gagaggccagatggttctcctctgggcatcattggcctggaacaggaaag
ccttggagagtatctaaccttccaagtttctgggtaaggttcc

gaattcttggtctgtagtaggtgaagctgttggggaagtattaggaggta
tccacttgctgaaggaagtgtgtcaccaggagtgggatttgtggttagtg
ctctctttctctgcctcttgcttatggatgagatgtaaactctcagctac
tgctccagtgccacgcctgccagtgtgctgattgctgttataatctttgc
atgatggtcatgagctttactaccctctggaactgttcacacaaaattaa
atgtgctcttataaagttgctttagtcatgatgtctcatcgtgacaagac
aaaagtaactaagacaatattgtttagttgggaactaaaaagggggccca
tgggaagagaggggaggaaaagacccatgccccaccaggcttttacctat
tctctggtctgtcaggcatgggagagctggcattcactttccactcagcc
ttgggtgggcattactctatcccactcttcagggagtggccagggggcag
ccatacctgggattcccacagctactttgctaaagtcaccagggttatag
aagagagtgatgagggaagaggttcccaacacctgcgaaagtgagggcag
cggatcttgactggagcacaggaaggtcttctaacgggagattagaaaag
gctcattaggagaaagcctgtcccatcctccaagcgcaggggaccttgat
tatcagagacattctatggttttagagctttattatagaaaggcaggggg
aaagagagaaggtagaagagagatagaaagagagagacagaaagagagag
agggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_74182433_74183614
seq2: B6Ng01-281F23.b_47_1239

seq1  GAATTCAATAAACTAATATTTTTCCAGACCCCCCGAGAAAGAATTTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAACTAATATTTTTCCAGACCCCCCGAGAAAGAATTTCTAT  50

seq1  AATATATCAAGGTAAACAAGTGTTCTGAAGCTAAAAGTGTTCCTATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCAAGGTAAACAAGTGTTCTGAAGCTAAAAGTGTTCCTATTTCT  100

seq1  TTCTGTCTCTGTCTCTATTTTAAACTATTTTTTAAAAATTAAAAATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTCTGTCTCTATTTTAAACTATTTTTTAAAAATTAAAAATATTT  150

seq1  ATCTTTAATGTTTTTTACAGTCCAGTCATTATCTCCCTCCCAATCATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAATGTTTTTTACAGTCCAGTCATTATCTCCCTCCCAATCATTCC  200

seq1  TCCTCCCATTCTACTCCCACCCCTTGTCTTCAAGAGGATATCCCTATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCATTCTACTCCCACCCCTTGTCTTCAAGAGGATATCCCTATCTT  250

seq1  CCTCTCCACTCTACTCCCCCCATATTTACACCCACAAATATCAAACAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCACTCTACTCCCCCCATATTTACACCCACAAATATCAAACAACA  300

seq1  AAGAAATTACCCTTGGTCATTCTTATTTTTAGATCTCAGGATAGCACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTACCCTTGGTCATTCTTATTTTTAGATCTCAGGATAGCACATA  350

seq1  GTTATTGCCAACATAGCAATAATTTTAATGATATACATTAAAAGTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCCAACATAGCAATAATTTTAATGATATACATTAAAAGTTTAAA  400

seq1  AGTCAGAGGTTGTCATGGTAGTTCAAAAATCCTATATTTTAGAATTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGGTTGTCATGGTAGTTCAAAAATCCTATATTTTAGAATTTCCC  450

seq1  CAATTCCAAATTGTTAGAAACTGGCAAGACTCAGGTATCCTTCACCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCAAATTGTTAGAAACTGGCAAGACTCAGGTATCCTTCACCACTA  500

seq1  AGGTGTACAATACACTAAAATCAGAATATATTTTACTTCTAAGTTACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTACAATACACTAAAATCAGAATATATTTTACTTCTAAGTTACACT  550

seq1  GTCAGTTTGTTGTTGAGCCTACATTTCAGAAACACCCAATCTTGTGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTGTTGTTGAGCCTACATTTCAGAAACACCCAATCTTGTGTAAT  600

seq1  GGGTGAAAATTTGAGATAGAAGTTATGTCATCCATTTTGAGATCTATTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAAATTTGAGATAGAAGTTATGTCATCCATTTTGAGATCTATTGC  650

seq1  TGTTACTTACTTTAAAAACCCACTAACCATTGCCTTGGAAAATGGCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTACTTTAAAAACCCACTAACCATTGCCTTGGAAAATGGCTTAG  700

seq1  TGTGTTAAGTTCTTGTTCTGTAAGTTGAATGACCTGATATTGAATCCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAAGTTCTTGTTCTGTAAGTTGAATGACCTGATATTGAATCCTCA  750

seq1  GAGATCATGTAAACCCCCGTACTATCACACATAAGCCTTATTCCCTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATGTAAACCCCCGTACTATCACACATAAGCCTTATTCCCTGTCT  800

seq1  TTCCAATGTGAGAAGAATGGTAGAAAGAATTCCTAGAAGCTCTCTGGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGTGAGAAGAATGGTAGAAAGAATTCCTAGAAGCTCTCTGGCCA  850

seq1  GTTAGTTTTGTACATAGCAGGTAGCAAAGACCTTGCTTCAGAAAAGGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTTTGTACATAGCAGGTAGCAAAGACCTTGCTTCAGAAAAGGTAA  900

seq1  AA-GGCCGATGTTGGCTTCTGAAATCTATGTGTGCATTTT-GGCATTCAA  948
      || ||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  AAGGGCCGATGTTGGCTTCTGAAATCTATGTGTGCATTTTGGGCATTC-A  949

seq1  ATTCCCACATGTATATATACACTGGCACTAACTATCATTAAATACATTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCACATGTATATATACACTGGCACTAACTATCATTAAATACATTGG  999

seq1  TTGC-TTTCTTATAAATCATGGGTAA-GGAAATAAATAAATATT-GAG--  1043
      |||| ||||||||||||||||||||| ||||||||||||||||| |||  
seq2  TTGCTTTTCTTATAAATCATGGGTAAGGGAAATAAATAAATATTGGAGGA  1049

seq1  AGGTTTCATGAAGAAATCAAATCCTAATTTAGCAAAAATGTGATTAAGGG  1093
       |||||||||||| ||||||||||||  |||||||||  |||| | ||||
seq2  GGGTTTCATGAAGGAATCAAATCCTA--TTAGCAAAATGGTGA-TGAGGG  1096

seq1  CAA-GAGA-GCCAGATG--TCTCTTC-CTGCATCATTTGCCCTGAACAGA  1138
      ||| |||| ||||||||  |||| ||   |||||||| |||  |||||| 
seq2  CAAGGAGAGGCCAGATGGTTCTCCTCTGGGCATCATTGGCCTGGAACAGG  1146

seq1  AAAGCCTT-GAGAGTAATCT-ACCTCTCAA-TTTCTGGGT-AGGTTCC  1182
      |||||||| |||||| |||| ||||  ||| ||||||||| |||||||
seq2  AAAGCCTTGGAGAGT-ATCTAACCTTCCAAGTTTCTGGGTAAGGTTCC  1193


seq1: chr11_22960370_22960516
seq2: B6Ng01-281F23.g_820_875 (reverse)

seq1  CTCCCTCCCTCTCTGTCTCTCTGTCTCT-TCTTTCTTTCAGCACTTAAAA  49
      |||||||||||||| ||| ||||||||| ||||||| ||  | |||  | 
seq2  CTCCCTCCCTCTCTCTCTTTCTGTCTCTCTCTTTCTATC-TCTCTTCTAC  49

seq1  AATATTTGCTGCTCCTGCTTTCATAATTTCTTAAGGAAAAAAAATCCACC  99
        | | |                                           
seq2  CTTCTCT-------------------------------------------  56

seq1  ATTGGGTCTGGGAAGATGGCTTAGTGGGTCATCTCTTCTACCTTCTCT  147
                                                      
seq2  ------------------------------------------------  56


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