BAC Information

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BAC

Clone NameB6Ng01-281L11
Chromosome6 (Build37)
Map Location 47,768,435 - 47,769,559
singlet/doubletsinglet
Overlap geneZfp786
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154
Downstream geneZfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281L11.bB6Ng01-281L11.g
ACCGA081123GA081124
length1,2261,122
definitionB6Ng01-281L11.b B6Ng01-281L11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaaaagcctgaggacagaacaggtatcagcctaactggtgactt
ctgaggcccctctctattctctgcctctgagtcttcacatgatcagtttt
caaccttttaaaaatggtatatgtctgttttccacataatcatgtctgtg
taccacatgcatgcctgctgcttataggggccaaaagaggatatcagacc
cctggaactagagttctaggtcattgtgagttgtccgtgtgagtgctggc
atccaaataaagactctgtataagagcagcaagtgcttttatcagtgaac
catttctccagcccctaccccccaaacagttatgttctggggtcttaagg
ttagaacttgcacacaccagttttgataccacagttcagttgataacagc
tgcttaactgttgtctcattttaagcccatgaaggtggcttagctgtgtt
ccagctgtacaggggctctacatctagcaaggtatcttccttggcgtctg
gatggctgctgtattggaccatttttctttcctggttttccatgctgcaa
ctggtgcagcactgggcattttgagaactgagatctttagcagtttagtc
acagtttctttccaaatgagcataagtcccacaattgaagtaccaggaag
tttggtatcagagacctttagctatatagcttgacccattttatattagc
atggtacatgttagaagcaatatcagtagtatcccttatttatttgtcca
taggtgctggccacacctttaatggtctaataatgtttttacatttagta
tttgcattttcaaacaccaaagtctctattaatgtctagtgttgaggtct
gatatggctttatttacagttgagacttatctttgtgaaaaacaacaaac
aaacaaacaaacaaacaaaaaacccgtgaaggcttctccagagccttgta
taatcttgtaaatgaggtagacctttttcccagactcctccacttggtcc
caacctcttaaagccacgaagtgacactgtacaacaaaatgtcaaacttg
attctgttttctgtttatcagaataccgcttctttaacccaggcactggt
cttttactataattcattcccatcattcattttcactgttccaatgtttg
gcgagctcttctcccacatggtaaccatgcaactggcaaactggggacac
tctcagtatacacggcagtggtctac
gaattcctgccctggaaggagaccttcagaaagtctcagtgagatttgtg
tcctggccacgcctttagttctagtacttgggggacaaaggcagtggata
tctgtgagttgagccagatctctatagttctactagatgtgagactataa
gtaatttgcatattgcgatacctggtttatgctctgcctattctttttaa
gatttatttctttattttatgtatatgagtacacagtagttgtacagatg
gttgtgagccatcatgtacttgctgggaattgaactcaggagcttcagaa
gagcagtcagtgctcttaaccgtgaagctatctctccaatccactctacc
tgttctttagtcagttgcctaagtattcatttattcttgagaaccttact
tctgcttcgaatagcattaccacaccagaactctgaaatctctatccact
gactcagcccctgatctggagccagaccgctcaaccttggttttttgttt
cctcaactcagattatcagcattttcttaagaccatgctatacattaatc
atcaagagtcccgaggagaaatttcaacagtcacatgaaattctgagaat
ttatcttatgggtttcaaaataagtgaaacgcaaacccaagtgccgggcg
tggtggcacacgcctttaatcccagcacttgggaggcagaggcaggcgga
tttctgagttcgaggccagcctggtctacaaagtgagttccaggagacag
tcagggctacacagaaaaaccctgtctcgaaaaaccaaaaaaaaaaaaaa
aaaaaagcaaacccaaacgcatatcaccacagaaattaaattcactgtat
ttaacccgaattataatctggaaagaacaaaagagtagagctgatattaa
ctagaccccctccctctgccttttgtagctttgacagtggctctggagga
atttccttctgggtttaagctgggacttggtgaactaactgcttttgggg
tgaaatgcaaccaaagtggtgggaagaacaaaaaccttcttttttaacag
gagaggatatattggcgtgtattccaaaggagaaaatcttcatagttccc
aatttgacttatatttggaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47768435_47769559
seq2: B6Ng01-281L11.g_65_1186

seq1  GAATTCCTGCCCTGGAAGGAGACCTTCAGAAAGTCTCAGTGAGATTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCCTGGAAGGAGACCTTCAGAAAGTCTCAGTGAGATTTGTG  50

seq1  TCCTGGCCACGCCTTTAGTTCTAGTACTTGGGGGACAAAGGCAGTGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCCACGCCTTTAGTTCTAGTACTTGGGGGACAAAGGCAGTGGATA  100

seq1  TCTGTGAGTTGAGCCAGATCTCTATAGTTCTACTAGATGTGAGACTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGTTGAGCCAGATCTCTATAGTTCTACTAGATGTGAGACTATAA  150

seq1  GTAATTTGCATATTGCGATACCTGGTTTATGCTCTGCCTATTCTTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGCATATTGCGATACCTGGTTTATGCTCTGCCTATTCTTTTTAA  200

seq1  GATTTATTTCTTTATTTTATGTATATGAGTACACAGTAGTTGTACAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTCTTTATTTTATGTATATGAGTACACAGTAGTTGTACAGATG  250

seq1  GTTGTGAGCCATCATGTACTTGCTGGGAATTGAACTCAGGAGCTTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCCATCATGTACTTGCTGGGAATTGAACTCAGGAGCTTCAGAA  300

seq1  GAGCAGTCAGTGCTCTTAACCGTGAAGCTATCTCTCCAATCCACTCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCAGTGCTCTTAACCGTGAAGCTATCTCTCCAATCCACTCTACC  350

seq1  TGTTCTTTAGTCAGTTGCCTAAGTATTCATTTATTCTTGAGAACCTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTAGTCAGTTGCCTAAGTATTCATTTATTCTTGAGAACCTTACT  400

seq1  TCTGCTTCGAATAGCATTACCACACCAGAACTCTGAAATCTCTATCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCGAATAGCATTACCACACCAGAACTCTGAAATCTCTATCCACT  450

seq1  GACTCAGCCCCTGATCTGGAGCCAGACCGCTCAACCTTGGTTTTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGCCCCTGATCTGGAGCCAGACCGCTCAACCTTGGTTTTTTGTTT  500

seq1  CCTCAACTCAGATTATCAGCATTTTCTTAAGACCATGCTATACATTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACTCAGATTATCAGCATTTTCTTAAGACCATGCTATACATTAATC  550

seq1  ATCAAGAGTCCCGAGGAGAAATTTCAACAGTCACATGAAATTCTGAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGTCCCGAGGAGAAATTTCAACAGTCACATGAAATTCTGAGAAT  600

seq1  TTATCTTATGGGTTTCAAAATAAGTGAAACGCAAACCCAAGTGCCGGGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTATGGGTTTCAAAATAAGTGAAACGCAAACCCAAGTGCCGGGCG  650

seq1  TGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGA  700

seq1  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAGACAG  750

seq1  TCAGGGCTACACAGAAAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||    ||||||||||
seq2  TCAGGGCTACACAGAAAAACCCTGTCTCGAAAAACC----AAAAAAAAAA  796

seq1  AAAAAAAAAAGCAAACCCAAACGCATATCACCACAGAAATTAAATTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGCAAACCCAAACGCATATCACCACAGAAATTAAATTCACT  846

seq1  GTATTTAA-CCGAATTATAATCTGGAAAGAACAAAAGAGTAGAGCTGATA  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAACCCGAATTATAATCTGGAAAGAACAAAAGAGTAGAGCTGATA  896

seq1  TTAACTAGACCCCCTCCCTCTGCCTTTTGTAGCTTTGACAGTGGCTCTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAGACCCCCTCCCTCTGCCTTTTGTAGCTTTGACAGTGGCTCTGG  946

seq1  AGGAATTTCCTTCT-GGTTTAAGCTGGGACTT-GTGAACTAACTGCTTTT  997
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  AGGAATTTCCTTCTGGGTTTAAGCTGGGACTTGGTGAACTAACTGCTTTT  996

seq1  -GGGTGAAATGCACCCAAAGTGGTGGGAAGAACAAAAACCT--CTTTTTA  1044
       |||||||||||| |||||||||||||||||||||||||||   ||||||
seq2  GGGGTGAAATGCAACCAAAGTGGTGGGAAGAACAAAAACCTTCTTTTTTA  1046

seq1  CCAAGGGAGAGGATATAATTGGCG-GTATTCCAAAAGAGAAAATTCTTCA  1093
       ||  ||||||||||| ||||||| |||||||||| ||||||| ||||||
seq2  ACA--GGAGAGGATAT-ATTGGCGTGTATTCCAAAGGAGAAAA-TCTTCA  1092

seq1  TAGTTCCCCATTTTGAATTTATATTTTGAATA  1125
      |||||||| ||||   | |||||||| |||||
seq2  TAGTTCCCAATTT--GACTTATATTTGGAATA  1122