BAC Information

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BAC

Clone NameB6Ng01-282B03
Chromosome6 (Build37)
Map Location 9,571,292 - 9,572,321
singlet/doubletsinglet
Overlap genenone
Upstream geneIca1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282B03.bB6Ng01-282B03.g
ACCGA081384GA081385
length1,088536
definitionB6Ng01-282B03.b B6Ng01-282B03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaatgagtaaaggtgcgctgctaagactgatagcctgagctga
accccaggactcacactgtagaaagggaaagcaactaagagttgaccttt
gacttttcctcgcctacaagtaagtaataaatgtaagtacaagtgaaaag
gctacagagtgaattctcttcaaaggaaaaatagacagacattttcagaa
gatacctttataaagcatgtgtttttgtatacttttattaccaattaaaa
catttcaaattaggaaagaatgatatcttgagactggtgctggcagcaaa
ggctttagaattggcgaggtagggaatctgagtatttaagaccaaggact
atatgtctaatcagtcttcaaaacaaagatattttacttgtagacactag
gctaaaataagtataaacccatgtagaaatgctttcagatttagtttgtt
agtcagcttctcattgatgatcaacataagcagcatgagcaatgtgagaa
accaatataaaaaagaagtttcattctgtgtcaagaatgtagacgtttca
tattcgtaatcaacaagccttattgatttttattggttttaattattttt
tattaggtattttcttcatttacatttccagtgctatcccaaaagtcccc
cataccctccccccccccactccccaacccacccactcccacttcttggc
cctggctttcccctgtactgaggcatataaagtttgcatgagcaatgggc
ctctctttccactgatggcccacttctgatacatatgcagctagagacac
gagctccgggaggtactggttagttcatattgttgttttcacctataggg
ttacagatccctttagctcttttgggtactttctctagctccttccattg
ggggccctgtgacccatccaaatagctgactgtgagcattcacttcttgt
gtttgctaggccccagcataggtctcacaagagacagctatatcaggtcc
ttttcagcaaaatttggaggttgatttatggggatggatccttgggtatg
cagtcttctagaccttctgcatgaagcagtcagtgctc

tctattcaagatttgtacaaatttatatatataatctttaaaagagtccc
catggttatgatgtctctttacagcaacagaaatcctaagatacccatca
taagtgtatgaaggtcaatatgtagttttagctatggtaatgtttctttt
acaaacttggttgccctggtgtttgaggcatagatgttaaaaattgaaat
gtcatctaggaagatctttcctttgatgaatatgtagatattttgttaga
tattaaaatggttacaccagcttgattcttaggtccatttgcttggaata
tcgttttccaaccctttagattgtagataaatgtaatgtttattcttgat
gttgaggttaatttcttggaaacaaaagaaggatgaatccagttttccta
tttattcagtttgtctgcctcttttttttttttgaaattgagatcgttgt
tactgataaacatcagtgtccaataattattgatttctgtgatgttattg
ttgctgttgttgtagttgttgttggtggtagtggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9571292_9572321
seq2: B6Ng01-282B03.b_96_1134 (reverse)

seq1  GAGCACTGACTGC-TCTTCCAGAGGTCCTAG-AGACTGCCATACCCAGGG  48
      ||||||||||||| || | |||| |  |||| |||||| |||||||| ||
seq2  GAGCACTGACTGCTTCATGCAGAAGGTCTAGAAGACTG-CATACCCAAGG  49

seq1  ATCCAT-CCCAT-AATCAACCTCCAAATTTTGCTGAAAGGACCCTGATAT  96
      |||||| ||||| ||||||||||||||||||||||||| |  ||||||||
seq2  ATCCATCCCCATAAATCAACCTCCAAATTTTGCTGAAAAGGACCTGATAT  99

seq1  AGCTGTCTCTTGTGAGA-CTATGCTGGGGCCTAGCAAACAC-AGAAGTGA  144
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  AGCTGTCTCTTGTGAGACCTATGCTGGGGCCTAGCAAACACAAGAAGTGA  149

seq1  ATGCTCACAGTCAGCTA-TTGGATGGGTCACAGGGCCCCCAATGG-AGGA  192
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  ATGCTCACAGTCAGCTATTTGGATGGGTCACAGGGCCCCCAATGGAAGGA  199

seq1  GCTAGAGAAAGTACCC-AAAGAGCTAAAGGGATCTGTAACCCTATAGGTG  241
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTAGAGAAAGTACCCAAAAGAGCTAAAGGGATCTGTAACCCTATAGGTG  249

seq1  -AAACAACAATATGAACTAACCAGTACCTCCCGGAGCTCGTGTCTCTAGC  290
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAATATGAACTAACCAGTACCTCCCGGAGCTCGTGTCTCTAGC  299

seq1  TGCATATGTATCAGAAGTGGGCCATCAGTGGAAAGAGAGGCCCATTGCTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGTATCAGAAGTGGGCCATCAGTGGAAAGAGAGGCCCATTGCTC  349

seq1  ATGCAAACTTTATATGCCTCAGTACAGGGGAAAGCCAGGGCCAAGAAGTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACTTTATATGCCTCAGTACAGGGGAAAGCCAGGGCCAAGAAGTG  399

seq1  GGAGTGGGTGGGTTGGGGAGTGGGGGGGGGGAGGGTATGGGGGACTTTTG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGTGGGTTGGGGAGTGGGGGGGGGGAGGGTATGGGGGACTTTTG  449

seq1  GGATAGCACTGGAAATGTAAATGAAGAAAATACCTAATAAAAAATAATTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCACTGGAAATGTAAATGAAGAAAATACCTAATAAAAAATAATTA  499

seq1  AAACCAATAAAAATCAATAAGGCTTGTTGATTACGAATATGAAACGTCTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATAAAAATCAATAAGGCTTGTTGATTACGAATATGAAACGTCTA  549

seq1  CATTCTTGACACAGAATGAAACTTCTTTTTTATATTGGTTTCTCACATTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGACACAGAATGAAACTTCTTTTTTATATTGGTTTCTCACATTG  599

seq1  CTCATGCTGCTTATGTTGATCATCAATGAGAAGCTGACTAACAAACTAAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTGCTTATGTTGATCATCAATGAGAAGCTGACTAACAAACTAAA  649

seq1  TCTGAAAGCATTTCTACATGGGTTTATACTTATTTTAGCCTAGTGTCTAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGCATTTCTACATGGGTTTATACTTATTTTAGCCTAGTGTCTAC  699

seq1  AAGTAAAATATCTTTGTTTTGAAGACTGATTAGACATATAGTCCTTGGTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAATATCTTTGTTTTGAAGACTGATTAGACATATAGTCCTTGGTC  749

seq1  TTAAATACTCAGATTCCCTACCTCGCCAATTCTAAAGCCTTTGCTGCCAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACTCAGATTCCCTACCTCGCCAATTCTAAAGCCTTTGCTGCCAG  799

seq1  CACCAGTCTCAAGATATCATTCTTTCCTAATTTGAAATGTTTTAATTGGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCTCAAGATATCATTCTTTCCTAATTTGAAATGTTTTAATTGGT  849

seq1  AATAAAAGTATACAAAAACACATGCTTTATAAAGGTATCTTCTGAAAATG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGTATACAAAAACACATGCTTTATAAAGGTATCTTCTGAAAATG  899

seq1  TCTGTCTATTTTTCCTTTGAAGAGAATTCACTCTGTAGCCTTTTCACTTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTATTTTTCCTTTGAAGAGAATTCACTCTGTAGCCTTTTCACTTG  949

seq1  TACTTACATTTATTACTTACTTGTAGGCGAGGAAAAGTCAAAGGTCAACT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACATTTATTACTTACTTGTAGGCGAGGAAAAGTCAAAGGTCAACT  999

seq1  CTTAGTTGCTTTCCCTTTCTACAGTGTGAGTCCTGGGGTT  1030
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTGCTTTCCCTTTCTACAGTGTGAGTCCTGGGGTT  1039


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