BAC Information

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BAC

Clone NameB6Ng01-285E23
Chromosome6 (Build37)
Map Location 138,530,421 - 138,676,552
singlet/doubletdoublet
Overlap geneLmo3, Igbp1b
Upstream geneEps8, Strap, Dera, 9830102E05Rik, Mgst1
Downstream geneEG668196, EG632971, LOC100043898, Pik3c2g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285E23.bB6Ng01-285E23.g
ACCGA083792GA083793
length1,0361,047
definitionB6Ng01-285E23.b B6Ng01-285E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,530,421 - 138,531,481)(138,675,509 - 138,676,552)
sequence
gaattctttctggaaatcactaaagaccatgtatgaccgagaaacctgcc
tccctgtgcatagcagaacagcagtgctcacacctcgggagagtcaggga
aacctggcagccgtttcagcgtcttctggtcctttgattaaagtcttccc
acgctggcccccagtcccaaaccaactggacccttctgctcttccagccg
tggtagtggaccactgtaatgtgccgctctgaaagcctactttactttct
gtaaccttcccttccatccaatgaaaagcaactgtggccttttacaaagt
aaatgagcaaatattttcccagtgttcaccaggttagatccccatttaat
taaactggctcattatgtccctatctgattagcagagtagaatcaattat
tcaatgcacaaacatggctgcaggagcttgaggtgtatacagagctgttc
atttaattccaaggacactaattaggtacaaagcaagcaataactttaac
aattgcaggcacaagcatacatgcagtacaggacaaggggaagggagggg
gaagaaaacaggccttcattttcttaataagctggattctcttcccccta
acagggtcaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccagaaagca
agagaggatgaaatgtagatcaagaaagctaagcatccaggaaataaccc
cccgggatttgcatatgtaatggggctctgctacttttgtactttataat
caaacagtaggcaattatccaaattattgacagcagatttctcatttcaa
ctgcaaattaaggccattaataaagcttttctaatgcaaaagtgactaat
taactaatggaatggaactcggaagctgtgatatcaaaaccagtccacac
atattgtgaaacacaggggactaattagtttattatcaaacagctattaa
attacacagtgctatagtcttgcattttttctcgtttatgacagatggag
taatagtaactgtctcaagagaaggagaaaaaaaaa

gaattcctgccctgacttcctttagtgattaaacatcaatgtggaagtgt
aagctgaatgaacccttttccccacaacttgctccttggtgttctgtgca
ggaatacaaaccctaagacactgaggatgccttgtttctctgcactacca
gttaacattgctttcattggcttcaaaaagtaacggactatgtacagagg
gcagggatccatttgtatcttgtgaagattatctgtgaacaagagccatt
tcaggttgttcccaacaaactctatgatgtatttaaggggaatatgatca
gactttacattgattgatagaaaatacagtgtcaattaaggttatgtcca
ttctggtgatgagcctgaggttcaatccagttttaagagagctatgggat
ggttataaattggtgaggtcctataatgccaggatttccacactaagtac
atgggatattttcctctctttaaacagaattaatctactcaatatggaaa
cttttaggatcaactttctttcaggttatatcttaacacccagattttta
tccaaagattctaattcaatgaggtaatgcaatctacctctacaaaagct
tgcaaatcccatgaaggttcaacattggtccactgagcaatgttctcagt
caaaagcaaaaatttattatgaccaaaagtatgaaaaatcctgtaacata
tctagtgtttttaggctgaaatttagtgtgtttcatttaatgtcttatgt
tggttaaagatcactcagaaattatagcagccagtttggtctgaagttag
cgataggtttactgtaaggctcatcatttctgtaataaatcagataggat
ttcttatttgaaagtcaaatacacaaaatcttctagccccttctgtattg
atcttaatacatcaagcaacagaggagagatgaatgtttatggaaatgtg
accatgcacagatccatggtgcaaggcaatagcatctagatgggaggaag
gaggtgaaaccagaaattagtttttctggtgtttgaagaagttattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_138530421_138531481
seq2: B6Ng01-285E23.b_44_1079

seq1  GAATTCTTTCTGGAAATCACTAAAGACCATGTATGACCGAGAAACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGGAAATCACTAAAGACCATGTATGACCGAGAAACCTGCC  50

seq1  TCCCTGTGCATAGCAGAACAGCAGTGCTCACACCTCGGGAGAGTCAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGCATAGCAGAACAGCAGTGCTCACACCTCGGGAGAGTCAGGGA  100

seq1  AACCTGGCAGCCGTTTCAGCGTCTTCTGGTCCTTTGATTAAAGTCTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGCAGCCGTTTCAGCGTCTTCTGGTCCTTTGATTAAAGTCTTCCC  150

seq1  ACGCTGGCCCCCAGTCCCAAACCAACTGGACCCTTCTGCTCTTCCAGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGCCCCCAGTCCCAAACCAACTGGACCCTTCTGCTCTTCCAGCCG  200

seq1  TGGTAGTGGACCACTGTAATGTGCCGCTCTGAAAGCCTACTTTACTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTGGACCACTGTAATGTGCCGCTCTGAAAGCCTACTTTACTTTCT  250

seq1  GTAACCTTCCCTTCCATCCAATGAAAAGCAACTGTGGCCTTTTACAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTTCCCTTCCATCCAATGAAAAGCAACTGTGGCCTTTTACAAAGT  300

seq1  AAATGAGCAAATATTTTCCCAGTGTTCACCAGGTTAGATCCCCATTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCAAATATTTTCCCAGTGTTCACCAGGTTAGATCCCCATTTAAT  350

seq1  TAAACTGGCTCATTATGTCCCTATCTGATTAGCAGAGTAGAATCAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGGCTCATTATGTCCCTATCTGATTAGCAGAGTAGAATCAATTAT  400

seq1  TCAATGCACAAACATGGCTGCAGGAGCTTGAGGTGTATACAGAGCTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCACAAACATGGCTGCAGGAGCTTGAGGTGTATACAGAGCTGTTC  450

seq1  ATTTAATTCCAAGGACACTAATTAGGTACAAAGCAAGCAATAACTTTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTCCAAGGACACTAATTAGGTACAAAGCAAGCAATAACTTTAAC  500

seq1  AATTGCAGGCACAAGCATACATGCAGTACAGGACAAGGGGAAGGGAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAGGCACAAGCATACATGCAGTACAGGACAAGGGGAAGGGAGGGG  550

seq1  GAAGAAAACAGGCCTTCATTTTCTTAATAAGCTGGATTCTCTTCCCCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAACAGGCCTTCATTTTCTTAATAAGCTGGATTCTCTTCCCCCTA  600

seq1  ACAGGGTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAAAGCA  650
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACAGGGTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAGAAAGCA  650

seq1  AGAGAGGATGAAATGTAGATCAAGAAAGCTAAGCATCCAGGAAATAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGATGAAATGTAGATCAAGAAAGCTAAGCATCCAGGAAATAACCC  700

seq1  CCCGGGATTTGCATATGTAATGGGGCTCTGCTACTTTTGTACTTTATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGATTTGCATATGTAATGGGGCTCTGCTACTTTTGTACTTTATAAT  750

seq1  CAAACAGTAGGCAATTATCCAAATTATTGACAGCAGATTTCTCATTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTAGGCAATTATCCAAATTATTGACAGCAGATTTCTCATTTCAA  800

seq1  CTGCAAATTAAGGCCATTAATAAAGC-TTTCTAATGCAAAAGTGACTAAT  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGCAAATTAAGGCCATTAATAAAGCTTTTCTAATGCAAAAGTGACTAAT  850

seq1  TAACTAATGGAATGGAACTCGGAAGCTGTGATATCAAAACCAGTCCACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAACTAATGGAATGGAACTCGGAAGCTGTGATATCAAAACCAGTCCA-CA  899

seq1  CATATTGTGGAAACACAGGGGAACTAATTAGTTTAATTATCAAAACAGCT  949
      |||||||| |||||||||||| |||||||||||| |||||| ||||||||
seq2  CATATTGT-GAAACACAGGGG-ACTAATTAGTTT-ATTATC-AAACAGCT  945

seq1  AATTAAAATTACACAGTTGCCTAATTAGTTCTTTGCATTTTTTCTCCGGT  999
      |  | ||||||||||||   |||  ||||   ||||||||||||||  ||
seq2  A--TTAAATTACACAGT--GCTA--TAGT--CTTGCATTTTTTCTC--GT  985

seq1  TTAATTGACAGGATGGAGTTAAATAGGTAACTGGTCTCAAAGAGGGAAAG  1049
      |||  ||||| ||||||||  |||| |||||| ||||| |||||   |||
seq2  TTA--TGACA-GATGGAGT--AATA-GTAACT-GTCTC-AAGAG---AAG  1024

seq1  GAGAAAAAAAAA  1061
      ||||||||||||
seq2  GAGAAAAAAAAA  1036


seq1: chr6_138675509_138676552
seq2: B6Ng01-285E23.g_66_1112 (reverse)

seq1  GAATAACTTCTTCAAACACCAG--AAACTAA-TTCTGGTTTCACCTCCTT  47
      ||||||||||||||||||||||  ||||||| ||||||||||||||||||
seq2  GAATAACTTCTTCAAACACCAGAAAAACTAATTTCTGGTTTCACCTCCTT  50

seq1  CCTCCCATCTGGTTGCTATGCCTTTGCACCATGGATCTGTGCATGGTCAC  97
      |||||||||| | ||||||  | |||||||||||||||||||||||||||
seq2  CCTCCCATCTAGATGCTATTGCCTTGCACCATGGATCTGTGCATGGTCAC  100

seq1  ATTTCCATAAACATTCATCTCTCCTCTGTTGCTTGATGTATTAAGATCAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATAAACATTCATCTCTCCTCTGTTGCTTGATGTATTAAGATCAA  150

seq1  TACAGAAGGGGCTAGAAGATTTTGTGTATTTGACTTTCAAATAAGAAATC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGGGGCTAGAAGATTTTGTGTATTTGACTTTCAAATAAGAAATC  200

seq1  CTATCCTGATTTATTACAGAAATGATGAGCCTTACAGT-AACCTATCGCT  246
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTAT-CTGATTTATTACAGAAATGATGAGCCTTACAGTAAACCTATCGCT  249

seq1  AACTTCAGACCAAACTGGCTGCTATAATTTCTGAGTGATCTTTAACCAAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGACCAAACTGGCTGCTATAATTTCTGAGTGATCTTTAACCAAC  299

seq1  ATAAGACATTAAATGAAACACACTAAATTTCAGCCTAAAAACACTAGATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACATTAAATGAAACACACTAAATTTCAGCCTAAAAACACTAGATA  349

seq1  TGTTACAGGATTTTTCATACTTTTGGTCATAATAAATTTTTGCTTTTGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGGATTTTTCATACTTTTGGTCATAATAAATTTTTGCTTTTGAC  399

seq1  TGAGAACATTGCTCAGTGGACCAATGTTGAACCTTCATGGGATTTGCAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACATTGCTCAGTGGACCAATGTTGAACCTTCATGGGATTTGCAAG  449

seq1  CTTTTGTAGAGGTAGATTGCATTACCTCATTGAATTAGAATCTTTGGATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAGAGGTAGATTGCATTACCTCATTGAATTAGAATCTTTGGATA  499

seq1  AAAATCTGGGTGTTAAGATATAACCTGAAAGAAAGTTGATCCTAAAAGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGGGTGTTAAGATATAACCTGAAAGAAAGTTGATCCTAAAAGTT  549

seq1  TCCATATTGAGTAGATTAATTCTGTTTAAAGAGAGGAAAATATCCCATGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTGAGTAGATTAATTCTGTTTAAAGAGAGGAAAATATCCCATGT  599

seq1  ACTTAGTGTGGAAATCCTGGCATTATAGGACCTCACCAATTTATAACCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTGTGGAAATCCTGGCATTATAGGACCTCACCAATTTATAACCAT  649

seq1  CCCATAGCTCTCTTAAAACTGGATTGAACCTCAGGCTCATCACCAGAATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGCTCTCTTAAAACTGGATTGAACCTCAGGCTCATCACCAGAATG  699

seq1  GACATAACCTTAATTGACACTGTATTTTCTATCAATCAATGTAAAGTCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAACCTTAATTGACACTGTATTTTCTATCAATCAATGTAAAGTCTG  749

seq1  ATCATATTCCCCTTAAATACATCATAGAGTTTGTTGGGAACAACCTGAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTCCCCTTAAATACATCATAGAGTTTGTTGGGAACAACCTGAAA  799

seq1  TGGCTCTTGTTCACAGATAATCTTCACAAGATACAAATGGATCCCTGCCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTGTTCACAGATAATCTTCACAAGATACAAATGGATCCCTGCCC  849

seq1  TCTGTACATAGTCCGTTACTTTTTGAAGCCAATGAAAGCAATGTTAACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACATAGTCCGTTACTTTTTGAAGCCAATGAAAGCAATGTTAACTG  899

seq1  GTAGTGCAGAGAAACAAGGCATCCTCAGTGTCTTAGGGTTTGTATTCCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCAGAGAAACAAGGCATCCTCAGTGTCTTAGGGTTTGTATTCCTG  949

seq1  CACAGAACACCAAGGAGCAAGTTGTGGGGAAAAGGGTTCATTCAGCTTAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACACCAAGGAGCAAGTTGTGGGGAAAAGGGTTCATTCAGCTTAC  999

seq1  ACTTCCACATTGATGTTTAATCACTAAAGGAAGTCAGGGCAGGAATTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACATTGATGTTTAATCACTAAAGGAAGTCAGGGCAGGAATTC  1047


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