BAC Information

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BAC

Clone NameB6Ng01-287G15
Chromosome6 (Build37)
Map Location 84,673,039 - 84,673,746
singlet/doubletsinglet
Overlap geneExoc6b
Upstream geneVax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1
Downstream geneLOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287G15.bB6Ng01-287G15.g
ACCGA085347GA085348
length1,239708
definitionB6Ng01-287G15.b B6Ng01-287G15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaattcccagcaaccagatggtggcttacaattatctgtaatgag
atctgatgccctcttctggtgtgtctgagctacagtataccccatatata
tttgtctataataaataaatagttctttttaaaaaattatctaccaagta
gacttcaccttagaattgcaagaatggttcaacatatataaatctgtaaa
tgtaatctgccatatacacaaactgaaagacaaaactgtgtgatcatgtg
attggatgcacaaaagttctttgacaaaatccaacatcccttcacactaa
aagtcctggagagattatggatataaggaacatattacaatataataaag
gtagtttacaaccagcccatagccaacatcaatctaaatgaaaacccaaa
gccattccactaaaatcaggagcaagacaagttcactttctccataccta
ttcaatatagtacttgaagtcctagctagagcagcaagacaactgagaga
gagtaaggggaaacaaattggaaagagaaaagtcaaactacctttatttg
tagatgatatgatagtaaccctacaagtccatggggaaactcctgcattt
gataaatacttttagcaaagtagccggatacaagatttactcataaaaat
cagtaaccttcctatataccaatggcagattgagaaagaaatcaggaaaa
caacaccattcataatagttcaaaaattataaaatatcttggggtaactc
taaccaagaaagtgaaagacttgtatgttaaaaactttaaaacattgagg
aagatatccgaagatgggaagatctcccatgctcacatcagtaggattaa
tatagtaaaaatggccaactcatcaaattaatctatagattcaacgcaat
ccccatcaaaataccaacacaattcttcacagattttgaaaggacatttt
taactccatatggaaacatacacacacatatacacaaacaaaaacaaaaa
caaaaacaaagagagctaaaataaatcccaaataataaaataactgctgg
agaataccacccccagatcaaatcataactacagaggaatagtataaaaa
cagcatggtattggcacagaaccattcatgtcatcatggatcaaaatgaa
gacccagacttaaatccaatacctattgggccatgatttcgataagaaga
cgaaattctatggaaaggaaggcatcttctacacaaatt
gaattcaccatggacccatgagacttcaaccctagacaaagaaaataggc
aattaagaatagctgtaaacaggagaggtggactttctcagggaagacca
caccaattggttgttgatgccaatttcagtttcagggtatacacacacac
acacacacacacacacacacatagatatagatatagatatgtagatattg
caataatggttgctttttttttaagaggccatgagtttggaaagaaagaa
aaaatactatacacatgggtttggagggagaaatttaaaggtgaaatgtt
gtaattataatctcaaataaagaaagaattcacaatagattgtcttgttc
acatgactgttgaagttacagtggttaattgcagtacttggtttcatcct
gagtaaaaacaagattctagaggtcaagttgaaataggctgccaaacctg
gagtttctcctaattaggtacatatatgtaggtgagagtaaatgtaaaag
ccataagacaggaaaagagcattgaaggaggaatgtgtggtatataatgg
aacacatgagacatggacatggaagagaattattgggggacagaaggctc
tagtagagatggggatgggggattggtttagtgataattctggaattttg
gtttctttaacaaaacacagaatattgtaagaatatgcttcattttaatc
ctaggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_84673039_84673746
seq2: B6Ng01-287G15.g_69_776 (reverse)

seq1  ACACCTAGGATTAAAATGAAGCATATTCTTACAATATTCTGTGTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACACCTAGGATTAAAATGAAGCATATTCTTACAATATTCTGTGTTTTGTT  50

seq1  AAAGAAACCAAAATTCCAGAATTATCACTAAACCAATCCCCCATCCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCAAAATTCCAGAATTATCACTAAACCAATCCCCCATCCCCAT  100

seq1  CTCTACTAGAGCCTTCTGTCCCCCAATAATTCTCTTCCATGTCCATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTAGAGCCTTCTGTCCCCCAATAATTCTCTTCCATGTCCATGTCT  150

seq1  CATGTGTTCCATTATATACCACACATTCCTCCTTCAATGCTCTTTTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTCCATTATATACCACACATTCCTCCTTCAATGCTCTTTTCCTG  200

seq1  TCTTATGGCTTTTACATTTACTCTCACCTACATATATGTACCTAATTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGCTTTTACATTTACTCTCACCTACATATATGTACCTAATTAGG  250

seq1  AGAAACTCCAGGTTTGGCAGCCTATTTCAACTTGACCTCTAGAATCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCCAGGTTTGGCAGCCTATTTCAACTTGACCTCTAGAATCTTGT  300

seq1  TTTTACTCAGGATGAAACCAAGTACTGCAATTAACCACTGTAACTTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCAGGATGAAACCAAGTACTGCAATTAACCACTGTAACTTCAAC  350

seq1  AGTCATGTGAACAAGACAATCTATTGTGAATTCTTTCTTTATTTGAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTGAACAAGACAATCTATTGTGAATTCTTTCTTTATTTGAGATT  400

seq1  ATAATTACAACATTTCACCTTTAAATTTCTCCCTCCAAACCCATGTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACAACATTTCACCTTTAAATTTCTCCCTCCAAACCCATGTGTAT  450

seq1  AGTATTTTTTCTTTCTTTCCAAACTCATGGCCTCTTAAAAAAAAAGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTTCTTTCTTTCCAAACTCATGGCCTCTTAAAAAAAAAGCAAC  500

seq1  CATTATTGCAATATCTACATATCTATATCTATATCTATGTGTGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGCAATATCTACATATCTATATCTATATCTATGTGTGTGTGTGT  550

seq1  GTGTGTGTGTGTGTGTGTATACCCTGAAACTGAAATTGGCATCAACAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTATACCCTGAAACTGAAATTGGCATCAACAACC  600

seq1  AATTGGTGTGGTCTTCCCTGAGAAAGTCCACCTCTCCTGTTTACAGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTGTGGTCTTCCCTGAGAAAGTCCACCTCTCCTGTTTACAGCTAT  650

seq1  TCTTAATTGCCTATTTTCTTTGTCTAGGGTTGAAGTCTCATGGGTCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTGCCTATTTTCTTTGTCTAGGGTTGAAGTCTCATGGGTCCATG  700

seq1  GTGAATTC  708
      ||||||||
seq2  GTGAATTC  708