BAC Information

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BAC

Clone NameB6Ng01-288F16
Chromosome6 (Build37)
Map Location 24,636,072 - 24,637,165
singlet/doubletsinglet
Overlap genenone
Upstream geneCadps2, Tas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl
Downstream gene4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358, Gpr37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288F16.bB6Ng01-288F16.g
ACCGA086037GA086038
length1,2121,101
definitionB6Ng01-288F16.b B6Ng01-288F16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatactgaatggctgagaagcacctgaaaaaaaa
atgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctga
gattccacctcacaacagtcagaatggctaagaccaaaaattcgggtgac
agcagatgctggcaaggatgtggagaaagaggaacactcctccattgttg
gtgggattgcaagctggtacaaccactctggaaatcagtctggtggttcc
tcagaaaattggacatagtactacctgaggacccagctatacctctcctg
gacatgtacccaaaagatgctccaacttgtaataaggacacatgctctac
tatgttcatagcagccttatttataatagccagaagctggaaagaaccca
aatgtccctcaacagaggaatggatatagaaaacgttgtacatttacaca
atggaatactactcagctattaaaaacaatgaatgtatgaaaatcttagg
caaatggatggatttgaaggatgtcatcctgagtgaagtaacccaatcac
aaaacacacatgatatgcactcactgataagtggatattagcccagaaac
ttagaatacctaagatactatttacaaaacacgtgaaactcaagaagaca
gaagaccaaagtgtggatacttcattccttcttacaatggggaagaaaat
acccatggaaggagttacagagacaaagttcagagctgagcctgaaggaa
ggaccatccagagactgccccacttgcggatcccccccataaacaaccag
caaacccagacactaggcagatgtcaacaagagcttgctgagaggagcct
gatatagctgtcttctgcgaagctctgccagtgcctggcaaatatagaaa
tagatgctcacagacatccattggacagagcacaaggtctccactgaagg
gagccagagaaacacccctgggagctgaagggtactggatccccatagaa
ggacatcaatatgaactaaccagtacccctgagctccttggactatacca
ccaatcaaaaaaaaaaaacaacatggttgaactagttgctctagctatat
tatgtagcagaggatggaactagctgttcatcaaatggtaagaaagagtc
tcgtcctgttgcaagctcttatgcccagtatagggtatgtccaaggaccc
aggcaattgtga
gaattccatcactgggcacccacctggtagatggagagaattagctcctg
caagctgtttgttgatctctagttgtaggccttggtacacatgaacccac
acacagacacacatgtaagtaaatgtcacaaagaactttactatagttaa
gttccactcattttttcatatctcattcttcctctaagatagtgaggaag
acactattttctaaggagttacttctatactgaaatgatattgtatttat
atgctgttaggatggaaagaacagctaacatggcaccagaaatgacttga
catgttgacccaattcttatgtaatgatgggatggatacagatacacatg
tttgacaagacaaatatcactctgtggtagtttggatagaaatggccctc
atagactcatgtatttgggcattattaggaggagtggccttgttggagga
tgagctttgagttctcctctactcaaactatgcccaacatgtcccacaga
ctctccttgctgcctggagaacaagctgtagagctaccagctctctttcc
accaccttgtcagcctgcatgctcccatgcttcctgccatgacattgacg
gactaaacctctgaaaccgtaagccactctaattaaatgttttcctttat
aagcattaccatagtcatggtgtctcttaaaagcaatggaaccctaagac
acactttgacaattttctgttttaggtcaagcccctgctactgtccaagt
gccatagatttaccatgtcttcggggacattaacagaccacattaatgta
aaggccttattatgttctagcctccactgctagatagtttggtaatcgtt
ggataaacaggttgaagcataataacctattgccatacctatcaaaagag
ctgcatgtattttttatgcacctcaaaaaaactggcctctagaaatgctt
aggaggtacctgagtcccatattctattcctttttataagtacattggcc
tatgaatcatctatattgataaagacatatttaccacttcctgcttaagg
cctatttcatcattcattatgttattttagcgggggatgccaaagatgaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_24636072_24637165
seq2: B6Ng01-288F16.g_71_1171

seq1  GAATTCCATCACTGGG-ACCCACCTGGTAGATGGAGAGAATTAGCTCCTG  49
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAATTCCATCACTGGGCACCCACCTGGTAGATGGAGAGAATTAGCTCCTG  50

seq1  CAAGCTGTTTGTTGATCTCTAGTTGTAGGCCTTGGTACACATGAACCCAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGTTTGTTGATCTCTAGTTGTAGGCCTTGGTACACATGAACCCAC  100

seq1  ACACAGACACACATGTAAGTAAATGTCACAAAGAACTTTACTATAGTTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACACATGTAAGTAAATGTCACAAAGAACTTTACTATAGTTAA  150

seq1  GTTCCACTCATTTTTTCATATCTCATTCTTCCTCTAAGATAGTGAGGAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACTCATTTTTTCATATCTCATTCTTCCTCTAAGATAGTGAGGAAG  200

seq1  ACACTATTTTCTAAGGAGTTACTTCTATACTGAAATGATATTGTATTTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATTTTCTAAGGAGTTACTTCTATACTGAAATGATATTGTATTTAT  250

seq1  ATGCTGTTAGGATGGAAAGAACAGCTAACATGGCACCAGAAATGACTTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTAGGATGGAAAGAACAGCTAACATGGCACCAGAAATGACTTGA  300

seq1  CATGTTGACCCAATTCTTATGTAATGATGGGATGGATACAGATACACATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGACCCAATTCTTATGTAATGATGGGATGGATACAGATACACATG  350

seq1  TTTGACAAGACAAATATCACTCTGTGGTAGTTTGGATAGAAATGGCCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAAGACAAATATCACTCTGTGGTAGTTTGGATAGAAATGGCCCTC  400

seq1  ATAGACTCATGTATTTGGGCATTATTAGGAGGAGTGGCCTTGTTGGAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTCATGTATTTGGGCATTATTAGGAGGAGTGGCCTTGTTGGAGGA  450

seq1  TGAGCTTTGAGTTCTCCTCTACTCAAACTATGCCCAACATGTCCCACAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTTGAGTTCTCCTCTACTCAAACTATGCCCAACATGTCCCACAGA  500

seq1  CTCTCCTTGCTGCCTGGAGAACAAGCTGTAGAGCTACCAGCTCTCTTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTGCTGCCTGGAGAACAAGCTGTAGAGCTACCAGCTCTCTTTCC  550

seq1  ACCACCTTGTCAGCCTGCATGCTCCCATGCTTCCTGCCATGACATTGACG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTTGTCAGCCTGCATGCTCCCATGCTTCCTGCCATGACATTGACG  600

seq1  GACTAAACCTCTGAAACCGTAAGCCACTCTAATTAAATGTTTTCCTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAACCTCTGAAACCGTAAGCCACTCTAATTAAATGTTTTCCTTTAT  650

seq1  AAGCATTACCATAGTCATGGTGTCTCTTAAAAGCAATGGAACCCTAAGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTACCATAGTCATGGTGTCTCTTAAAAGCAATGGAACCCTAAGAC  700

seq1  ACACTTTGACAATTTTCTGTTTTAGGTCAAGCCCCTGCTACTGTCCAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTGACAATTTTCTGTTTTAGGTCAAGCCCCTGCTACTGTCCAAGT  750

seq1  GCCATAGATTTACCATGTCTTCGGGGACATTAACAGACCACATTAATGT-  798
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCATAGATTTACCATGTCTTCGGGGACATTAACAGACCACATTAATGTA  800

seq1  AAGGCCTTATTATGTTCTAGCCTCCACTGCTAGATAGTTTGGTAATCGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTATTATGTTCTAGCCTCCACTGCTAGATAGTTTGGTAATCGTT  850

seq1  GGATAAACAGGTTGAAGCATAATAACCTATTGCCATACCTATCAAAAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAACAGGTTGAAGCATAATAACCTATTGCCATACCTATCAAAAGAG  900

seq1  CTGCATGTA-TTTTTATGCACCTC-AAAAAACTGGCCCTCTAGAAATGCT  946
      ||||||||| |||||||||||||| |||||||||| ||||||||||||||
seq2  CTGCATGTATTTTTTATGCACCTCAAAAAAACTGG-CCTCTAGAAATGCT  949

seq1  TAGGAGGTACCTGAGTCCCATA-TCTATT-CTTTTTAT-AGTACATT-GC  992
      |||||||||||||||||||||| |||||| |||||||| |||||||| ||
seq2  TAGGAGGTACCTGAGTCCCATATTCTATTCCTTTTTATAAGTACATTGGC  999

seq1  CTATGAAATCATCTATA-TGATTAAGAACATATTTACCACTTCCTGCTTT  1041
      ||||| ||||||||||| |||| ||| |||||||||||||||||||| ||
seq2  CTATG-AATCATCTATATTGATAAAG-ACATATTTACCACTTCCTGC-TT  1046

seq1  AAAGCTTATTTCATCATTCATTATGTTATTTTAGC-GGGGATGCC-AAGA  1089
      || || ||||||||||||||||||||||||||||| ||||||||| ||||
seq2  AAGGCCTATTTCATCATTCATTATGTTATTTTAGCGGGGGATGCCAAAGA  1096

seq1  TGAAA  1094
      |||||
seq2  TGAAA  1101