BAC Information

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BAC

Clone NameB6Ng01-288K02
Chromosome6 (Build37)
Map Location 87,201,073 - 87,341,747
singlet/doubletdoublet
Overlap geneAntxr1, Gkn1, Gkn2, 1190003M12Rik
Upstream geneTgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e
Downstream geneBmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288K02.bB6Ng01-288K02.g
ACCGA086245GA086246
length1,1741,124
definitionB6Ng01-288K02.b B6Ng01-288K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,340,584 - 87,341,747)(87,201,073 - 87,202,204)
sequence
gaattccaggaaacacaaacgtggtagcttagggtttctattgttgtggt
tataaagcactgtgaccaaaaggaacttgagaaagaaagggtccccaggc
cttccccatcagtctctaagtaagaaaatgctccagtgggtttgcctcca
ggccagtcttacaggacattttctcagttgagagtcccctgcccagatag
ctctagggtttgccacaccaaaccaaaccaaaccaaaccaaaccaaacca
aaccaaaccaaacaaaaccaaaccaaacaaaactaaccatgacatatgga
taatgcgtcgtgcataaaatccacttattcagccatttagcatatgaatt
cccgaatatctcctctggtgctgcagttttaccagaaaacacaacaaaat
ttctaatttatgaacttggcagttgagtggcataggtgtccaatttaatg
ccctggtcacacaactatacaaacaaatgaaacccaatggaaacatgcac
acaagggttacaggcaaggagctacgcttacaaggaagacatttgcctgg
gagtgaggcaagcctagagattgggggtgggggcgtatagtatccaaaca
taaatcagagaaggcagaaaaggatgaaattagggtgtccagtcatgaac
agggggcctagtcagcaaagccagggcggcccatgggcaagacggaaggc
cagatgtgctcagtgtatgtgatagactagaaagtgtctgaaggcagagg
caaggggcagcagtagccaagtcatactgaggaccagaagagcttgaggc
atgttgaaaaatcatatgtaaactcaaaaggaggtactttctaaacgtca
tctcagtgaacgtgttgctcagtaagaggccaaggttgaacagatttggc
cactccttcctgacacattggtttagttggcctttgcaaaactgaattgt
ggatagatttatttagtcaccagcctgaaccaccattattttaaagtagc
agtccaatgctcttattttaacctcagttgcctgagtcttttatggtaaa
aatatcatagcttctttcatcagtcaacagagaacttcaatttagtatgg
agtgaacccagaacctgatctcactgaacatctgaggaaataagtttgaa
tgactgctagagtcccctgcgtga
gaattcttttctaatagcagggcaagtgcatttgtagtcatcttagaaaa
acagacaggaagaagaaaatataaatttactgtagtcttatgcaggggtg
gctgtttcaagtttgctcttgaccgtgtgaagagaaacagtaccaaacac
tgcttttatgtactgcttgtaactttgttttaacacaggatgtaacattc
ccacagcactctcctacaatattaggatttatgaagggtgacttgtgttt
tgcatgtggctcacccaccaagaaacagttacgctcttctttaaatgctc
cctggcccctcttctttcttcctttactagaagtagcagaataagcggcc
atgttaccatgtctgttgaccagtggttctcaacctccctagcactgcga
ccctttaatacagatcctcatgtggtgctgacccccaaccggaacattat
tttcgttgctactttgtaactgtgactttgctactgctaatctcactctc
tgagactcttctctgagaagcccacacctatgcttccaatacatcttagt
ttcttctctctttctctcaactctcctgcttgtgtctatatgaagaaatc
cttactaaatcccaactctacttcataaatgttgaggcagtagactcatt
ttaagaactgctttctaagctatctgatggtgtcttactgatcatgcata
aaaacattgttcatctgtgtctttgccaattctgggcactggtttttttg
ttacattcccccgggttgctatggcaaaatcaacgattggagctggctgt
ggtggtgccggcccgtaatcacagtactcgagaggccaataaacatgggc
acaatctctctttgatttccctttggttttgttctttcctcttgcatggc
catggcacactgggattcatgagcactgcttttcacactgggcactctct
ctggggttagggagcactgtttcttgtaaagtcccttttcatctattccc
tgtcttttacttttggaaaacagttttattatttgttgtgcccatgtggg
tggttggtgtcagttctctttctccactgtgatcaaggctaactcagatg
ctacattttggacctgtattatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87340584_87341747
seq2: B6Ng01-288K02.b_46_1219 (reverse)

seq1  TCACG-AGGGGGCTCTAGCAGTCATTC-AACTT-TCTCCTCGGATGTTCA  47
      ||||| ||||| ||||||||||||||| ||||| | ||||| ||||||||
seq2  TCACGCAGGGGACTCTAGCAGTCATTCAAACTTATTTCCTCAGATGTTCA  50

seq1  GTGAGACCAG--TCTGGGGTTTCACTCCCTACTAAATGGA--GTCTCTGT  93
      |||||| |||  ||||||  |||||||| |||||||| ||   |||||||
seq2  GTGAGATCAGGTTCTGGG--TTCACTCCATACTAAATTGAAGTTCTCTGT  98

seq1  TGACTGATGAAAAGAAGCTATGATATTTTTAACAATAAAAGACCTCAGGC  143
      ||||||||| |||||||||||||||||||| || |||||||| |||||||
seq2  TGACTGATG-AAAGAAGCTATGATATTTTT-ACCATAAAAGA-CTCAGGC  145

seq1  AACTGGAGTTAAAATAAGAGCATTGGACTGCTACTTT-AAATAATGGTGG  192
      |||||  |||||||||||||||||||||||||||||| ||||||||||||
seq2  AACTGAGGTTAAAATAAGAGCATTGGACTGCTACTTTAAAATAATGGTGG  195

seq1  TTCA-GCTGGTGACTAAAT-AATCTATCCAC-ATTCAGTTTTGCAAAGGC  239
      |||| |||||||||||||| ||||||||||| ||||||||||||||||||
seq2  TTCAGGCTGGTGACTAAATAAATCTATCCACAATTCAGTTTTGCAAAGGC  245

seq1  C-ACTAA--CCATGTGTCAGG-AGGAGTGGCCAAATCTGTTCAACCTTGG  285
      | |||||  | |||||||||| ||||||||||||||||||||||||||||
seq2  CAACTAAACCAATGTGTCAGGAAGGAGTGGCCAAATCTGTTCAACCTTGG  295

seq1  CCTCTTACTGAGCAACACGTTCACTGAGATGACGTTTAGAAAGTACCTCC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTACTGAGCAACACGTTCACTGAGATGACGTTTAGAAAGTACCTCC  345

seq1  TTTTGAGTTTACATATGATTTTTCAACATGCCTCAAGCTCTTCTGGTCCT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTTTACATATGATTTTTCAACATGCCTCAAGCTCTTCTGGTCCT  395

seq1  CAGTATGACTTGGCTACTGCTGCCCCTTGCCTCTGCCTTCAGACACTTTC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGACTTGGCTACTGCTGCCCCTTGCCTCTGCCTTCAGACACTTTC  445

seq1  TAGTCTATCACATACACTGAGCACATCTGGCCTTCCGTCTTGCCCATGGG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATCACATACACTGAGCACATCTGGCCTTCCGTCTTGCCCATGGG  495

seq1  CCGCCCTGGCTTTGCTGACTAGGCCCCCTGTTCATGACTGGACACCCTAA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCTGGCTTTGCTGACTAGGCCCCCTGTTCATGACTGGACACCCTAA  545

seq1  TTTCATCCTTTTCTGCCTTCTCTGATTTATGTTTGGATACTATACGCCCC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCTTTTCTGCCTTCTCTGATTTATGTTTGGATACTATACGCCCC  595

seq1  CACCCCCAATCTCTAGGCTTGCCTCACTCCCAGGCAAATGTCTTCCTTGT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCAATCTCTAGGCTTGCCTCACTCCCAGGCAAATGTCTTCCTTGT  645

seq1  AAGCGTAGCTCCTTGCCTGTAACCCTTGTGTGCATGTTTCCATTGGGTTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTAGCTCCTTGCCTGTAACCCTTGTGTGCATGTTTCCATTGGGTTT  695

seq1  CATTTGTTTGTATAGTTGTGTGACCAGGGCATTAAATTGGACACCTATGC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTTGTATAGTTGTGTGACCAGGGCATTAAATTGGACACCTATGC  745

seq1  CACTCAACTGCCAAGTTCATAAATTAGAAATTTTGTTGTGTTTTCTGGTA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAACTGCCAAGTTCATAAATTAGAAATTTTGTTGTGTTTTCTGGTA  795

seq1  AAACTGCAGCACCAGAGGAGATATTCGGGAATTCATATGCTAAATGGCTG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCAGCACCAGAGGAGATATTCGGGAATTCATATGCTAAATGGCTG  845

seq1  AATAAGTGGATTTTATGCACGACGCATTATCCATATGTCATGGTTAGTTT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGGATTTTATGCACGACGCATTATCCATATGTCATGGTTAGTTT  895

seq1  TGTTTGGTTTGGTTTTGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTTTGGTTTTGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTT  945

seq1  GGTTTGGTTTGGTGTGGCAAACCCTAGAGCTATCTGGGCAGGGGACTCTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGTTTGGTGTGGCAAACCCTAGAGCTATCTGGGCAGGGGACTCTC  995

seq1  AACTGAGAAAATGTCCTGTAAGACTGGCCTGGAGGCAAACCCACTGGAGC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAAAATGTCCTGTAAGACTGGCCTGGAGGCAAACCCACTGGAGC  1045

seq1  ATTTTCTTACTTAGAGACTGATGGGGAAGGCCTGGGGACCCTTTCTTTCT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTACTTAGAGACTGATGGGGAAGGCCTGGGGACCCTTTCTTTCT  1095

seq1  CAAGTTCCTTTTGGTCACAGTGCTTTATAACCACAACAATAGAAACCCTA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCTTTTGGTCACAGTGCTTTATAACCACAACAATAGAAACCCTA  1145

seq1  AGCTACCACGTTTGTGTTTCCTGGAATTC  1164
      |||||||||||||||||||||||||||||
seq2  AGCTACCACGTTTGTGTTTCCTGGAATTC  1174

seq1: chr6_87201073_87202204
seq2: B6Ng01-288K02.g_67_1190

seq1  GAATTCTTTTCTAATAGCAGGGCAAGTGCATTTGTAGTCATCTTAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTAATAGCAGGGCAAGTGCATTTGTAGTCATCTTAGAAAA  50

seq1  ACAGACAGGAAGAAGAAAATATAAATTTACTGTAGTCTTATGCAGGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGGAAGAAGAAAATATAAATTTACTGTAGTCTTATGCAGGGGTG  100

seq1  GCTGTTTCAAGTTTGCTCTTGACCGTGTGAAGAGAAACAGTACCAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCAAGTTTGCTCTTGACCGTGTGAAGAGAAACAGTACCAAACAC  150

seq1  TGCTTTTATGTACTGCTTGTAACTTTGTTTTAACACAGGATGTAACATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTATGTACTGCTTGTAACTTTGTTTTAACACAGGATGTAACATTC  200

seq1  CCACAGCACTCTCCTACAATATTAGGATTTATGAAGGGTGACTTGTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCACTCTCCTACAATATTAGGATTTATGAAGGGTGACTTGTGTTT  250

seq1  TGCATGTGGCTCACCCACCAAGAAACAGTTACGCTCTTCTTTAAATGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGGCTCACCCACCAAGAAACAGTTACGCTCTTCTTTAAATGCTC  300

seq1  CCTGGCCCCTCTTCTTTCTTCCTTTACTAGAAGTAGCAGAATAAGCGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCCTCTTCTTTCTTCCTTTACTAGAAGTAGCAGAATAAGCGGCC  350

seq1  ATGTTACCATGTCTGTTGACCAGTGGTTCTCAACCTCCCTAGCACTGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACCATGTCTGTTGACCAGTGGTTCTCAACCTCCCTAGCACTGCGA  400

seq1  CCCTTTAATACAGATCCTCATGTGGTGCTGACCCCCAACCGGAACATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAATACAGATCCTCATGTGGTGCTGACCCCCAACCGGAACATTAT  450

seq1  TTTCGTTGCTACTTTGTAACTGTGACTTTGCTACTGCTAATCTCACTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTGCTACTTTGTAACTGTGACTTTGCTACTGCTAATCTCACTCTC  500

seq1  TGAGACTCTTCTCTGAGAAGCCCACACCTATGCTTCCAATACATCTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCTTCTCTGAGAAGCCCACACCTATGCTTCCAATACATCTTAGT  550

seq1  TTCTTCTCTCTTTCTCTCAACTCTCCTGCTTGTGTCTATATGAAGAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTCTTTCTCTCAACTCTCCTGCTTGTGTCTATATGAAGAAATC  600

seq1  CTTACTAAATCCCAACTCTACTTCATAAATGTTGAGGCAGTAGACTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAAATCCCAACTCTACTTCATAAATGTTGAGGCAGTAGACTCATT  650

seq1  TTAAGAACTGCTTTCTAAGCTATCTGATGGTGTCTTACTGATCATGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACTGCTTTCTAAGCTATCTGATGGTGTCTTACTGATCATGCATA  700

seq1  AAAACATTGTTCATCTGTGTCTTTGCCAATTCTGGGCACTGG-TTTTTTG  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAACATTGTTCATCTGTGTCTTTGCCAATTCTGGGCACTGGTTTTTTTG  750

seq1  TTACATTCCCCCGGGTTGCTATGGCAAAATCAACGATTGGAGCTGGCTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCCCCCGGGTTGCTATGGCAAAATCAACGATTGGAGCTGGCTGT  800

seq1  GGTGGTGCCGGCCCGTAATCACAGTACTCGAGAGGCCAATAAACATGGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCCGGCCCGTAATCACAGTACTCGAGAGGCCAATAAACATGGGC  850

seq1  ACAATCTCTCTTTGATTTCCCTTTGGTTTTGTTCTTTCCTCTTGCATGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCTCTTTGATTTCCCTTTGGTTTTGTTCTTTCCTCTTGCATGGC  900

seq1  CATGGCCACACTGGGATTCATGAGCACTGCTTTTCACACTGGGCACTCTC  949
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGG-CACACTGGGATTCATGAGCACTGCTTTTCACACTGGGCACTCTC  949

seq1  TCTGGGGTTAGGGAGCACTGTTTTCTTGTAAAGTCCCTTTTCATCTATTT  999
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  TCTGGGGTTAGGGAGCACTG-TTTCTTGTAAAGTCCCTTTTCATCTATT-  997

seq1  CCCCTGTTCTTTTTACTTTTGG-AAACAGTTTTATTATTTG-TGTGCCCA  1047
       ||||||   |||||||||||| |||||||||||||||||| ||||||||
seq2  -CCCTGT--CTTTTACTTTTGGAAAACAGTTTTATTATTTGTTGTGCCCA  1044

seq1  TGTGGGT-GTGGGTGTCAGTTCTCTTTCTCCACTGTGGATCCAGGGCTTA  1096
      ||||||| || ||||||||||||||||||||||||| ||| || ||||  
seq2  TGTGGGTGGTTGGTGTCAGTTCTCTTTCTCCACTGT-GAT-CAAGGCT--  1090

seq1  AACTCTGGTTGTCAACCTTTTGGACCTGTATTATAT  1132
      ||||| | |   | || |||||||||||||||||||
seq2  AACTCAGAT--GCTACATTTTGGACCTGTATTATAT  1124