BAC Information

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BAC

Clone NameB6Ng01-288M09
Chromosome6 (Build37)
Map Location 127,585,807 - 127,776,025
singlet/doubletdoublet
Overlap genePrmt8
Upstream geneKcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b
Downstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288M09.bB6Ng01-288M09.g
ACCGA086352GA086353
length1,161630
definitionB6Ng01-288M09.b B6Ng01-288M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,774,876 - 127,776,025)(127,585,807 - 127,586,436)
sequence
gaattccagcacaaggaacatttcctataaaggctacgagcacagcggct
gccattccttatgttttatgtctgtgtgaccttcaagtatggctttactt
ctttcccaggtgtagccagcacatggctactttgtgggttcttttttctt
ccacccttctccaccccctttccaccctaactcgacatagtccagaaaaa
ggataggggtggggaaagggttatcattagactacttcctgctggttgtg
ggcgtcaagtttcctgtggcaagtttgatctaatttcttcttcctgtttc
ttctttgcgcatgactacttaacaaaccttgaccaccagccaccaaccac
caaccaacaacaacccaagcctgttggggccctggcatttatatactctc
tgagaagtcaaacaccacacacataacacaactgcacaaactacctgtcc
gctggcaacatcgtgctgcagaggcagtctgaagcagcctcacatcccac
ctgggactaaaaccaaaatatattcccataatatttctgtgtttttcaaa
gaaaacaacattttcactacacccagatattttctaaacaagagtacctt
tgtttacagtaacaatattctaacactctaaatcagagtgacttagacag
tagccctcacctgtaatctcacttaagttttttagcaactctttggagat
gcccccccccgcccccctctacctactatatatgtgactactgtaaaggc
aacgaaatagatctctcttttaaggtggccacacctatgctctcaagtgg
atctgtctcctaatttttttctcttaacttcatgcttagtacctatgtca
aaacaaaacaaaataactcccccccccaaaaaaaagacacaaaaaaagtt
tgttttcttttttaaaataaattccgattttgcttttcaccagctctttc
cacaattcttttctgtgtcgagggcagaggttgctgtgtttcatctgaag
tttgggggagctctcgggccgctggtgggtggaactggtggagctgccaa
ctgacgagggtcagggtgcagcacgggtgctccttgtgtctatgtgtcac
ctagagatggtgaaggaacatgtccagatggattcctggtcagcatggta
aacagagaccc
gaattcacttctccgcaggagccggcagagttgtgttgcttaattaggat
tgtctgaggtgaacttagaatttgattcagtctgttatggtcgtcgagtg
actttgtaattattctgtgaagaacaagaagaaaggaagggcacagatga
tgcttaaggaatgacgctatcaggcgcttggtgggagggtccccaggctg
atgccattgttagatgctcagtaatgacattaaggggtggcagaggagtg
actgtcctcccagcccagtgagcaaagtgacaagtttattaggccgttga
gtactctctaccacagaaccacactactgtgcacataggaattctgggac
cttggcggtgagactggagagccacttagtttccatgccaaggttcagaa
cacaggcaaagataaggcccagttatgaacttaactttccagtgatgcct
gcttctgtttcattgctttttccttcctccttccctccctcccttccttc
attttctccttcctcccttctctttccttctttcctttccttctctgaat
gctgctgttttcttgtataacagtagcatagtcttcctttccctcccctc
ctctcccttcccctcccctcctctcccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_127774876_127776025
seq2: B6Ng01-288M09.b_46_1206 (reverse)

seq1  GGGTCTCTGTTT-CCTTGCTGACCCAGGAAT-CATCTGGGACATGTTCCT  48
      |||||||||||| || |||||| |||||||| ||||| ||||||||||||
seq2  GGGTCTCTGTTTACCATGCTGA-CCAGGAATCCATCT-GGACATGTTCCT  48

seq1  TCA-CATCT-TA-GTGACAAAATAAAACAAAAGAAGCA-CCGTGCTGCA-  93
      ||| ||||| || |||||| |   | ||| ||| |||| |||||||||| 
seq2  TCACCATCTCTAGGTGACACA--TAGACACAAGGAGCACCCGTGCTGCAC  96

seq1  CCTGA-CCTCGTCAGTTGGCAGCTC--ACAGGT-CACCCA-CAGCGGGCC  138
      ||||| |||||||||||||||||||   ||| | |||||| |||||| ||
seq2  CCTGACCCTCGTCAGTTGGCAGCTCCACCAGTTCCACCCACCAGCGGCCC  146

seq1  GAGGAGCT-CCCCAAAC-TCAGATGAAACACAGCAACCTCTG-CCTCGAC  185
      || ||||| |||||||| |||||||||||||||||||||||| |||||||
seq2  GA-GAGCTCCCCCAAACTTCAGATGAAACACAGCAACCTCTGCCCTCGAC  195

seq1  ACAGAAAAGAATTGTGGAAAGAGCTGGTGAAAAGCAAAATCGGAATTTAT  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGAATTGTGGAAAGAGCTGGTGAAAAGCAAAATCGGAATTTAT  245

seq1  TTTAAAAAAGAAAACAAAC-TTTTTTGTGTCTTTTTTTTGGGGGGGGGAG  284
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTAAAAAAGAAAACAAACTTTTTTTGTGTCTTTTTTTTGGGGGGGGGAG  295

seq1  TTATTTTGTTTTGTTTTGACATAGGTACTAAGCATGAAGTTAAGAGAAAA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTTTTGTTTTGACATAGGTACTAAGCATGAAGTTAAGAGAAAA  345

seq1  AAATTAGGAGACAGATCCACTTGAGAGCATAGGTGTGGCCACCTTAAAAG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGAGACAGATCCACTTGAGAGCATAGGTGTGGCCACCTTAAAAG  395

seq1  AGAGATCTATTTCGTTGCCTTTACAGTAGTCACATATATAGTAGGTAGAG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTATTTCGTTGCCTTTACAGTAGTCACATATATAGTAGGTAGAG  445

seq1  GGGGGCGGGGGGGGGCATCTCCAAAGAGTTGCTAAAAAACTTAAGTGAGA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCGGGGGGGGGCATCTCCAAAGAGTTGCTAAAAAACTTAAGTGAGA  495

seq1  TTACAGGTGAGGGCTACTGTCTAAGTCACTCTGATTTAGAGTGTTAGAAT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTGAGGGCTACTGTCTAAGTCACTCTGATTTAGAGTGTTAGAAT  545

seq1  ATTGTTACTGTAAACAAAGGTACTCTTGTTTAGAAAATATCTGGGTGTAG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTACTGTAAACAAAGGTACTCTTGTTTAGAAAATATCTGGGTGTAG  595

seq1  TGAAAATGTTGTTTTCTTTGAAAAACACAGAAATATTATGGGAATATATT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGTTGTTTTCTTTGAAAAACACAGAAATATTATGGGAATATATT  645

seq1  TTGGTTTTAGTCCCAGGTGGGATGTGAGGCTGCTTCAGACTGCCTCTGCA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTAGTCCCAGGTGGGATGTGAGGCTGCTTCAGACTGCCTCTGCA  695

seq1  GCACGATGTTGCCAGCGGACAGGTAGTTTGTGCAGTTGTGTTATGTGTGT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGATGTTGCCAGCGGACAGGTAGTTTGTGCAGTTGTGTTATGTGTGT  745

seq1  GGTGTTTGACTTCTCAGAGAGTATATAAATGCCAGGGCCCCAACAGGCTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGACTTCTCAGAGAGTATATAAATGCCAGGGCCCCAACAGGCTT  795

seq1  GGGTTGTTGTTGGTTGGTGGTTGGTGGCTGGTGGTCAAGGTTTGTTAAGT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTTGTTGGTTGGTGGTTGGTGGCTGGTGGTCAAGGTTTGTTAAGT  845

seq1  AGTCATGCGCAAAGAAGAAACAGGAAGAAGAAATTAGATCAAACTTGCCA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGCGCAAAGAAGAAACAGGAAGAAGAAATTAGATCAAACTTGCCA  895

seq1  CAGGAAACTTGACGCCCACAACCAGCAGGAAGTAGTCTAATGATAACCCT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACTTGACGCCCACAACCAGCAGGAAGTAGTCTAATGATAACCCT  945

seq1  TTCCCCACCCCTATCCTTTTTCTGGACTATGTCGAGTTAGGGTGGAAAGG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACCCCTATCCTTTTTCTGGACTATGTCGAGTTAGGGTGGAAAGG  995

seq1  GGGTGGAGAAGGGTGGAAGAAAAAAGAACCCACAAAGTAGCCATGTGCTG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGAAGGGTGGAAGAAAAAAGAACCCACAAAGTAGCCATGTGCTG  1045

seq1  GCTACACCTGGGAAAGAAGTAAAGCCATACTTGAAGGTCACACAGACATA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACCTGGGAAAGAAGTAAAGCCATACTTGAAGGTCACACAGACATA  1095

seq1  AAACATAAGGAATGGCAGCCGCTGTGCTCGTAGCCTTTATAGGAAATGTT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAGGAATGGCAGCCGCTGTGCTCGTAGCCTTTATAGGAAATGTT  1145

seq1  CCTTGTGCTGGAATTC  1150
      ||||||||||||||||
seq2  CCTTGTGCTGGAATTC  1161

seq1: chr6_127585807_127586436
seq2: B6Ng01-288M09.g_70_699

seq1  GAATTCACTTCTCCGCAGGAGCCGGCAGAGTTGTGTTGCTTAATTAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTCCGCAGGAGCCGGCAGAGTTGTGTTGCTTAATTAGGAT  50

seq1  TGTCTGAGGTGAACTTAGAATTTGATTCAGTCTGTTATGGTCGTCGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGGTGAACTTAGAATTTGATTCAGTCTGTTATGGTCGTCGAGTG  100

seq1  ACTTTGTAATTATTCTGTGAAGAACAAGAAGAAAGGAAGGGCACAGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAATTATTCTGTGAAGAACAAGAAGAAAGGAAGGGCACAGATGA  150

seq1  TGCTTAAGGAATGACGCTATCAGGCGCTTGGTGGGAGGGTCCCCAGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGGAATGACGCTATCAGGCGCTTGGTGGGAGGGTCCCCAGGCTG  200

seq1  ATGCCATTGTTAGATGCTCAGTAATGACATTAAGGGGTGGCAGAGGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTGTTAGATGCTCAGTAATGACATTAAGGGGTGGCAGAGGAGTG  250

seq1  ACTGTCCTCCCAGCCCAGTGAGCAAAGTGACAAGTTTATTAGGCCGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTCCCAGCCCAGTGAGCAAAGTGACAAGTTTATTAGGCCGTTGA  300

seq1  GTACTCTCTACCACAGAACCACACTACTGTGCACATAGGAATTCTGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTCTACCACAGAACCACACTACTGTGCACATAGGAATTCTGGGAC  350

seq1  CTTGGCGGTGAGACTGGAGAGCCACTTAGTTTCCATGCCAAGGTTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCGGTGAGACTGGAGAGCCACTTAGTTTCCATGCCAAGGTTCAGAA  400

seq1  CACAGGCAAAGATAAGGCCCAGTTATGAACTTAACTTTCCAGTGATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAAAGATAAGGCCCAGTTATGAACTTAACTTTCCAGTGATGCCT  450

seq1  GCTTCTGTTTCATTGCTTTTTCCTTCCTCCTTCCCTCCCTCCCTTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTTCATTGCTTTTTCCTTCCTCCTTCCCTCCCTCCCTTCCTTC  500

seq1  ATTTTCTCCTTCCTCCCTTCTCTTTCCTTCTTTCCTTTCCTTCTCTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTTCCTCCCTTCTCTTTCCTTCTTTCCTTTCCTTCTCTGAAT  550

seq1  GCTGCTGTTTTCTTGTATAACAGTAGCATAGTCTTCCTTTCCCTCCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTTTTCTTGTATAACAGTAGCATAGTCTTCCTTTCCCTCCCCTC  600

seq1  CTCTCCCTTCCCCTCCCCTCCTCTCCCCTC  630
      ||||||||||||||||||||||||||||||
seq2  CTCTCCCTTCCCCTCCCCTCCTCTCCCCTC  630