BAC Information

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BAC

Clone NameB6Ng01-288N23
Chromosome6 (Build37)
Map Location 147,151,927 - 147,280,441
singlet/doubletdoublet
Overlap geneLOC100039641, Pthlh
Upstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288
Downstream geneEG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288N23.bB6Ng01-288N23.g
ACCGA086424GA086425
length1,048985
definitionB6Ng01-288N23.b B6Ng01-288N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,279,400 - 147,280,441)(147,151,927 - 147,152,909)
sequence
gaattcttctttctcctcccttaaacagccccataattaacgccctcgtg
tatacaaattttcctttctctgaattatttccttaggacaaatgccatct
gcgtgggacaggaaagataaacaaagaggaatgttttatggctcctgaag
caccttgccaaattattccagaaaaggtgccagtccatgtttgccactgg
tggtgcctgattatcccaagttcttccagtgatacactgctaggcatcaa
tcccagaggatttctccacagcataccttcttcacaacaaggtaccaggc
aactccgtctaagatctccattcatgtacccaatgttgtatttcttggga
tttcatttttaatttacaagaatatgttaattccagaaaaaacaattttt
tgcttttgaatgtacataaaattatcatttctgagctttcaaatgttttg
ttgaacccaaatcttgggtgtatgaacccttaatattaaaagaaaaaaat
gcttttaattaaagttcatcttagaaattttgttttatttgtaagccaaa
gtaggttagcaacatttttggaaacatttagaatagtattttgttctaca
cacacaagtatagattgttacttaataaaataattttagctctgttcaca
aatttaatatagtttatgctctctgttaagtacagctatcacaatgacta
tcctttgtcccatcagaacaacattattctagtgaattaaacatataaac
acagtggattttgtgttttcttaacttttccaataatctaaataaagttg
atgagatttaacttaaaagtgcaaaatctaaattacttaaaataattgtg
tattttacatcagaatgtcaaggactgatctattactgtgagaagcaaat
attcttagactcagcaagattaatatgtatatcaaattttttatttataa
aagttataatactaagtgcttggctctctcaaacatcttacaaccagtgc
tgggtctgccctctaggcttcctggacatgagtcctacacctgagatt
gaattcaaggagtagtaggcagataagacacaatttatttcaaggcaata
gactgctaggcaggcagaagccagcaggcacccaggcacacacaaagtcc
agtacatagacctacataggctgactggttaaggcaaaaggcaaagaaac
tggtacctgatcactaagccatgtttatacagaaccacgcccaaatgcca
ttatcaaataatttacttttggggtctgtggtcatttgaatgagaatgac
cccatatctttgaataattggtccccagttgcaggaactgtttgggaagg
attaggaggtatggctttgttggaggaggtgagtcacaggtggcgggctt
aaggtttcaaaagttccctgccaccccagtatactatctgcttttgttag
tggatggggattagagctctgagctgtgccatgactacctgtctgtggcc
aagctccccactgcagtggcgacaggctcctatctctctgagctgtaagc
tgcaatgaatgcttcctcctgtaaattgactcagtcctgatgtttgtcac
agcaatggagaagtacctaacactgtcagtctctgggcacccagtgtcag
ctgtgaactgctgacttgtgagctaggatctctgcccatgatctgcacca
gctcatggttaaatgtaaactgcccctttaggacctttttgctccctgca
cctagtccctactttcatatttttatcttctcaatattattgtttgggtt
tctagacagacaaaggcattcacaaggatagatgggcacaacaaataaaa
ttgaatttctatagaaatagaacaaaggggcaggggaaactgttttgggt
tgttaataagaatggaaataagaacaaaggaaaactggaattctttgtta
catgtggattaagctaatcccatgcagtcatacacttaaaaaatcttcaa
tgcaaacaggatttgcataactacaaatatcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_147279400_147280441
seq2: B6Ng01-288N23.b_46_1093 (reverse)

seq1  AATCTCTGGTGTAGGACTCATGT-CAGGAAGCCTAGAGGGCAGACCCAGC  49
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  AATCTCAGGTGTAGGACTCATGTCCAGGAAGCCTAGAGGGCAGACCCAGC  50

seq1  ACTGGTTGT-AGATGTTTGAGAGAGCCAAGCACTTAGTATTAATACTTTT  98
      ||||||||| ||||||||||||||||||||||||||||||||  ||||||
seq2  ACTGGTTGTAAGATGTTTGAGAGAGCCAAGCACTTAGTATTATAACTTTT  100

seq1  ATAA--TAAAAATTTGATATACATATTAATCTTGCTGAGTCTAAGAATAT  146
      ||||   |||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAAATAAAAAATTTGATATACATATTAATCTTGCTGAGTCTAAGAATA-  149

seq1  TTTGCTTCTCACAGTAATAGATCAGT-CTTGACATTCTGATGTAAAATAC  195
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGCTTCTCACAGTAATAGATCAGTCCTTGACATTCTGATGTAAAATAC  199

seq1  ACAATTA-TTTAAGTAATTTAGA-TTTGCACTTTTAAGTTAAATCTCATC  243
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  ACAATTATTTTAAGTAATTTAGATTTTGCACTTTTAAGTTAAATCTCATC  249

seq1  AACTTTATTTAGATTATTGGAAAAGTTAAGAAAACACAAAATCCACTGTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATTTAGATTATTGGAAAAGTTAAGAAAACACAAAATCCACTGTG  299

seq1  TTTATATGTTTAATTCACTAGAATAATGTTGTTCTGATGGGACAAAGGAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGTTTAATTCACTAGAATAATGTTGTTCTGATGGGACAAAGGAT  349

seq1  AGTCATTGTGATAGCTGTACTTAACAGAGAGCATAAACTATATTAAATTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTGTGATAGCTGTACTTAACAGAGAGCATAAACTATATTAAATTT  399

seq1  GTGAACAGAGCTAAAATTATTTTATTAAGTAACAATCTATACTTGTGTGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAGAGCTAAAATTATTTTATTAAGTAACAATCTATACTTGTGTGT  449

seq1  GTAGAACAAAATACTATTCTAAATGTTTCCAAAAATGTTGCTAACCTACT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACAAAATACTATTCTAAATGTTTCCAAAAATGTTGCTAACCTACT  499

seq1  TTGGCTTACAAATAAAACAAAATTTCTAAGATGAACTTTAATTAAAAGCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTACAAATAAAACAAAATTTCTAAGATGAACTTTAATTAAAAGCA  549

seq1  TTTTTTTCTTTTAATATTAAGGGTTCATACACCCAAGATTTGGGTTCAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTAATATTAAGGGTTCATACACCCAAGATTTGGGTTCAAC  599

seq1  AAAACATTTGAAAGCTCAGAAATGATAATTTTATGTACATTCAAAAGCAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTGAAAGCTCAGAAATGATAATTTTATGTACATTCAAAAGCAA  649

seq1  AAAATTGTTTTTTCTGGAATTAACATATTCTTGTAAATTAAAAATGAAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTTTTTTCTGGAATTAACATATTCTTGTAAATTAAAAATGAAAT  699

seq1  CCCAAGAAATACAACATTGGGTACATGAATGGAGATCTTAGACGGAGTTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAAATACAACATTGGGTACATGAATGGAGATCTTAGACGGAGTTG  749

seq1  CCTGGTACCTTGTTGTGAAGAAGGTATGCTGTGGAGAAATCCTCTGGGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTACCTTGTTGTGAAGAAGGTATGCTGTGGAGAAATCCTCTGGGAT  799

seq1  TGATGCCTAGCAGTGTATCACTGGAAGAACTTGGGATAATCAGGCACCAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTAGCAGTGTATCACTGGAAGAACTTGGGATAATCAGGCACCAC  849

seq1  CAGTGGCAAACATGGACTGGCACCTTTTCTGGAATAATTTGGCAAGGTGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCAAACATGGACTGGCACCTTTTCTGGAATAATTTGGCAAGGTGC  899

seq1  TTCAGGAGCCATAAAACATTCCTCTTTGTTTATCTTTCCTGTCCCACGCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGCCATAAAACATTCCTCTTTGTTTATCTTTCCTGTCCCACGCA  949

seq1  GATGGCATTTGTCCTAAGGAAATAATTCAGAGAAAGGAAAATTTGTATAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCATTTGTCCTAAGGAAATAATTCAGAGAAAGGAAAATTTGTATAC  999

seq1  ACGAGGGCGTTAATTATGGGGCTGTTTAAGGGAGGAGAAAGAAGAATTC  1042
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGGCGTTAATTATGGGGCTGTTTAAGGGAGGAGAAAGAAGAATTC  1048

seq1: chr6_147151927_147152909
seq2: B6Ng01-288N23.g_66_1050

seq1  GAATTCAAGGAGTAGTAGGCAGATAAGACACAATTTATTTCAAGGCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAGTAGTAGGCAGATAAGACACAATTTATTTCAAGGCAATA  50

seq1  GACTGCTAGGCAGGCAGAAGCCAGCAGGCACCCAGGCACACACAAAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTAGGCAGGCAGAAGCCAGCAGGCACCCAGGCACACACAAAGTCC  100

seq1  AGTACATAGACCTACATAGGCTGACTGGTTAAGGCAAAAGGCAAAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATAGACCTACATAGGCTGACTGGTTAAGGCAAAAGGCAAAGAAAC  150

seq1  TGGTACCTGATCACTAAGCCATGTTTATACAGAACCACGCCCAAATGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCTGATCACTAAGCCATGTTTATACAGAACCACGCCCAAATGCCA  200

seq1  TTATCAAATAATTTACTTTTGGGGTCTGTGGTCATTTGAATGAGAATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAATAATTTACTTTTGGGGTCTGTGGTCATTTGAATGAGAATGAC  250

seq1  CCCATATCTTTGAATAATTGGTCCCCAGTTGCAGGAACTGTTTGGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCTTTGAATAATTGGTCCCCAGTTGCAGGAACTGTTTGGGAAGG  300

seq1  ATTAGGAGGTATGGCTTTGTTGGAGGAGGTGAGTCACAGGTGGCGGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAGGTATGGCTTTGTTGGAGGAGGTGAGTCACAGGTGGCGGGCTT  350

seq1  AAGGTTTCAAAAGTTCCCTGCCACCCCAGTATACTATCTGCTTTTGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCAAAAGTTCCCTGCCACCCCAGTATACTATCTGCTTTTGTTAG  400

seq1  TGGATGGGGATTAGAGCTCTGAGCTGTGCCATGACTACCTGTCTGTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGGATTAGAGCTCTGAGCTGTGCCATGACTACCTGTCTGTGGCC  450

seq1  AAGCTCCCCACTGCAGTGGCGACAGGCTCCTATCTCTCTGAGCTGTAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCCCACTGCAGTGGCGACAGGCTCCTATCTCTCTGAGCTGTAAGC  500

seq1  TGCAATGAATGCTTCCTCCTGTAAATTGACTCAGTCCTGATGTTTGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGAATGCTTCCTCCTGTAAATTGACTCAGTCCTGATGTTTGTCAC  550

seq1  AGCAATGGAGAAGTACCTAACACTGTCAGTCTCTGGGCACCCAGTGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGAGAAGTACCTAACACTGTCAGTCTCTGGGCACCCAGTGTCAG  600

seq1  CTGTGAACTGCTGACTTGTGAGCTAGGATCTCTGCCCATGATCTGCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAACTGCTGACTTGTGAGCTAGGATCTCTGCCCATGATCTGCACCA  650

seq1  GCTCATGGTTAAATGTAAACTG-CCCTTTAGGACC-TTTTGCTCCCTGCA  698
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  GCTCATGGTTAAATGTAAACTGCCCCTTTAGGACCTTTTTGCTCCCTGCA  700

seq1  CCTAGTCCCTACTTTCATATTTTTATCTTCTCAATATTATTGTTT-GGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTAGTCCCTACTTTCATATTTTTATCTTCTCAATATTATTGTTTGGGTT  750

seq1  TCTAGACAGACAAAGGCATTCACAA-GATAGAT-GGCACAACAAAATAAA  795
      ||||||||||||||||||||||||| ||||||| |||||||| |||||||
seq2  TCTAGACAGACAAAGGCATTCACAAGGATAGATGGGCACAAC-AAATAAA  799

seq1  ATTGAA-TTCTATAGAAATAAGAACAAA-GGGCAGGGGAAACTG-TTTGG  842
      |||||| |||||||||||| |||||||| ||||||||||||||| |||||
seq2  ATTGAATTTCTATAGAAAT-AGAACAAAGGGGCAGGGGAAACTGTTTTGG  848

seq1  GTTGTAAATAAGAAATGGAATAAAGAACAAAGGAAAACTGGATTCTTTTG  892
      ||||| |||||| |||||||  |||||||||||||||||||| |  ||||
seq2  GTTGTTAATAAG-AATGGAAATAAGAACAAAGGAAAACTGGAATTCTTTG  897

seq1  TTACATGTGGATTAAGCTAATCCCAATGCAGTCATACACTTAAAAAAATC  942
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  TTACATGTGGATTAAGCTAATCCC-ATGCAGTCATACACTT-AAAAAATC  945

seq1  TTCAATGCAAACCAGGATTTGCATAACTACAAATATCACTG  983
      ||||||||||| |||||||||||||||||||||||||||||
seq2  TTCAATGCAAA-CAGGATTTGCATAACTACAAATATCACTG  985