BAC Information

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BAC

Clone NameB6Ng01-290L08
Chromosome6 (Build37)
Map Location 113,591,730 - 113,745,054
singlet/doubletdoublet
Overlap geneIrak2, Tatdn2, Ghrl, Sec13, Atp2b2
Upstream geneRad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh
Downstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290L08.bB6Ng01-290L08.g
ACCGA087784GA087785
length9791,076
definitionB6Ng01-290L08.b B6Ng01-290L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,591,730 - 113,592,691)(113,743,973 - 113,745,054)
sequence
gaattccactccggcctgggctacttttgagggtctgtctcaaaaagcca
aaaaccaagtaagcagcaagcaatcaaatgataaacaaacaaacccatta
tcaaccatcacataatccacacatttaaggagcacctctgtgagtgctca
cacacactcacgtgcacaccatacatcccgccgcccctgccccctccgct
ctaggtgttttctgttgtagcattttatgtgagtgggaccatcctgcgtg
cactgtcctttgcgaatggcttcagcatttagcaagtcttaaagggtcat
ccacgttgtagtcaatgtgagttctgtatccccttccttccttccgtccc
ctccctcatgtctctcttccaccccttcagtttctctcatttactctcct
ccctccttttccagtgatgaaaacagaacccagggtctctcacatgcagg
gctgtgctccttgttctagtatctctgcctctctgtctctgtctgtctct
ctgtctctgtctctctgtctctctctaacttttgggttttcgagacaggg
tttctctgtgtagttctggctgtcctggaactccctctatagaccaggct
ggtctcgaactcaaaggtccacctgcctctgcctcctatgggctgggatt
aaaggcatgcaccatcactgcctagctttccagtttctttcttttttttt
tttcttttttttttttttttggttttttgagacagggtttctctgtatag
ccctggctgtcctggaactcactttgtagaccgggctggcctcgaactca
gaaatccgcctgcctctgcctcccgagtgctgggattaaaggcgtgcgcc
accacgcccggccagtttctttttttatattcaagtaatactccagtgta
tggatgtccaatctttttgcttctccatgtctccactgagggaacatttt
ggcttccttctcgttctttgggcagtcat
gaattcctagtctttgcttcatctcatggaacccctagatcacaagctac
atgacagagcacacccactatgcagagctgcctgggccttgagacctgta
catcagccaagggatcatgggcatctggggaggttgtacccacaggccct
tactatcacccctcctccatcagagaatgctggtaggcacagtcccaaga
acatctttgtgggcaactgaggcaggtcaggtatagacacactgatctga
caggagggatcccaagaacaaagtgtatctcttgagctccagcattgccc
tagccagtcatttccctagctgagcctctgttcccttcacctgggacacg
ctccctgagaacaacacacgtgcctgatgccttttcaaatagcacctcct
ggtcatgctagctacagcagccgtatcttcagccacgacttcctgggatt
tttcctcagagtatcaattcgtgtctataatggtggcacatacacactgt
ctctgttactgctagatctgtacacaaggaatcaccatgcacctgccata
ttgcaggtgctcaaaggtgcttgttcagtgaatgagtaaaagattccacc
ttacctctttatagggtggcatctgtatagaggtggctcttttttttttt
agagatttgtttgtttgtttgtttgtttgtttgtttaatatatatgagta
cactgttgctctcttcagacacaccagaagaaggcatcagatcccattac
agatggttgtgagccaccatgcagttgctgggaattgaactcaggacctc
tgaaagagcagccagtggtcttaaccgctgagccatctctccagtcctag
aggtggctcttgatgtacctgtgttccctagccacacgtttttagtgtgg
ctgagtgtcatgtgggcaggcaccatgctaggtacttccctgcattgcca
cgtgagcattgcaaaaccccaggaaggaaatctgccccctatgcctcatt
gttcagaggaggcaactgaagctcctgagagcaaagcaaaggactctagc
cctaagcaagaggacagctggtctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_113591730_113592691
seq2: B6Ng01-290L08.b_46_1012

seq1  GAATTCCACTCCGGCCTGGGCTACTTTTGAGGGTCTGTCTCAAAAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCCGGCCTGGGCTACTTTTGAGGGTCTGTCTCAAAAAGCCA  50

seq1  AAAACCAAGTAAGCAGCAAGCAATCAAATGATAAACAAACAAACCCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAGTAAGCAGCAAGCAATCAAATGATAAACAAACAAACCCATTA  100

seq1  TCAACCATCACATAATCCACACATTTAAGGAGCACCTCTGTGAGTGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCATCACATAATCCACACATTTAAGGAGCACCTCTGTGAGTGCTCA  150

seq1  CACACACTCACGTGCACACCATACATCCCGCCGCCCCTGCCCCCTCCGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCACGTGCACACCATACATCCCGCCGCCCCTGCCCCCTCCGCT  200

seq1  CTAGGTGTTTTCTGTTGTAGCATTTTATGTGAGTGGGACCATCCTGCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGTTTTCTGTTGTAGCATTTTATGTGAGTGGGACCATCCTGCGTG  250

seq1  CACTGTCCTTTGCGAATGGCTTCAGCATTTAGCAAGTCTTAAAGGGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCTTTGCGAATGGCTTCAGCATTTAGCAAGTCTTAAAGGGTCAT  300

seq1  CCACGTTGTAGTCAATGTGAGTTCTGTATCCCCTTCCTTCCTTCCGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTTGTAGTCAATGTGAGTTCTGTATCCCCTTCCTTCCTTCCGTCCC  350

seq1  CTCCCTCATGTCTCTCTTCCACCCCTTCAGTTTCTCTCATTTACTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCATGTCTCTCTTCCACCCCTTCAGTTTCTCTCATTTACTCTCCT  400

seq1  CCCTCCTTTTCCAGTGATGAAAACAGAACCCAGGGTCTCTCACATGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTTTCCAGTGATGAAAACAGAACCCAGGGTCTCTCACATGCAGG  450

seq1  GCTGTGCTCCTTGTTCTAGTATCTCTGCCTCTCTGTCTCTGTCTGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTCCTTGTTCTAGTATCTCTGCCTCTCTGTCTCTGTCTGTCTCT  500

seq1  CTGTCTCTGTCTCTCTGTCTCTCTCTAACTTTTGGGTTTTCGAGACAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGTCTCTCTGTCTCTCTCTAACTTTTGGGTTTTCGAGACAGGG  550

seq1  TTTCTCTGTGTAGTTCTGGCTGTCCTGGAACTCCCTCTATAGACCAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGTAGTTCTGGCTGTCCTGGAACTCCCTCTATAGACCAGGCT  600

seq1  GGTCTCGAACTCAAAGGTCCACCTGCCTCTGCCTCCTATGGGCTGGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCGAACTCAAAGGTCCACCTGCCTCTGCCTCCTATGGGCTGGGATT  650

seq1  AAAGGCATGCACCATCACTGCCTAGCTTTCCAGTTTCTTTCTTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATGCACCATCACTGCCTAGCTTTCCAGTTTCTTTCTTTTTTTTT  700

seq1  TTTCTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAG  750

seq1  CCCTGGCTGTCCTGGAACTCACTTTGTAGACCGGGCTGGCCTCGAACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAACTCACTTTGTAGACCGGGCTGGCCTCGAACTCA  800

seq1  GAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCC  850

seq1  ACCACGCCCGGCCAGTTTC-TTTTTTATATTCAAGTAATACTCCAGTGTA  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCACGCCCGGCCAGTTTCTTTTTTTATATTCAAGTAATACTCCAGTGTA  900

seq1  TGGATGTCCAATC-TTTTGCTTCTCCATGTCTCCACTGAGGG-ACATTTG  947
      ||||||||||||| |||||||||||||||||||||||||||| |||||| 
seq2  TGGATGTCCAATCTTTTTGCTTCTCCATGTCTCCACTGAGGGAACATTTT  950

seq1  GGCT--CCTCTCGTTCT  962
      ||||  | |||||||||
seq2  GGCTTCCTTCTCGTTCT  967

seq1: chr6_113743973_113745054
seq2: B6Ng01-290L08.g_66_1141 (reverse)

seq1  GCAGACCCAGCTGTTCTTCCTTGCTTTGGGGCTAGGGTCCTTTGCTTTGC  50
      ||||| |||||||| ||  ||||| || ||||||| ||||||||||||||
seq2  GCAGA-CCAGCTGTCCT--CTTGC-TTAGGGCTAGAGTCCTTTGCTTTGC  46

seq1  TTCTCAGGGAGCCTCAGTTGCCTCTTCTGAACAATGAGGCATAGGGGGCA  100
       ||||| ||||| ||||||||||| |||||||||||||||||||||||||
seq2  -TCTCA-GGAGCTTCAGTTGCCTCCTCTGAACAATGAGGCATAGGGGGCA  94

seq1  GATTTCCTTCCTGGGGTTTTGCAATGCTCACGTGGCAATGCAGGGAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTTCCTGGGGTTTTGCAATGCTCACGTGGCAATGCAGGGAAGTA  144

seq1  CCTAGCATGGTGCCTGCCCACATGACACTCAGCCACACTAAAAACGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCATGGTGCCTGCCCACATGACACTCAGCCACACTAAAAACGTGTG  194

seq1  GCTAGGGAACACAGGTACATCAAGAGCCACCTCTAGGACTGGAGAGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGAACACAGGTACATCAAGAGCCACCTCTAGGACTGGAGAGATGG  244

seq1  CTCAGCGGTTAAGACCACTGGCTGCTCTTTCAGAGGTCCTGAGTTCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGGTTAAGACCACTGGCTGCTCTTTCAGAGGTCCTGAGTTCAATT  294

seq1  CCCAGCAACTGCATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACTGCATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCC  344

seq1  TTCTTCTGGTGTGTCTGAAGAGAGCAACAGTGTACTCATATATATTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGGTGTGTCTGAAGAGAGCAACAGTGTACTCATATATATTAAAC  394

seq1  AAACAAACAAACAAACAAACAAACAAATCTCTAAAAAAAAAAAGAGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAAACAAATCTCTAAAAAAAAAAAGAGCCAC  444

seq1  CTCTATACAGATGCCACCCTATAAAGAGGTAAGGTGGAATCTTTTACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATACAGATGCCACCCTATAAAGAGGTAAGGTGGAATCTTTTACTCA  494

seq1  TTCACTGAACAAGCACCTTTGAGCACCTGCAATATGGCAGGTGCATGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAACAAGCACCTTTGAGCACCTGCAATATGGCAGGTGCATGGTG  544

seq1  ATTCCTTGTGTACAGATCTAGCAGTAACAGAGACAGTGTGTATGTGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGTGTACAGATCTAGCAGTAACAGAGACAGTGTGTATGTGCCAC  594

seq1  CATTATAGACACGAATTGATACTCTGAGGAAAAATCCCAGGAAGTCGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAGACACGAATTGATACTCTGAGGAAAAATCCCAGGAAGTCGTGG  644

seq1  CTGAAGATACGGCTGCTGTAGCTAGCATGACCAGGAGGTGCTATTTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATACGGCTGCTGTAGCTAGCATGACCAGGAGGTGCTATTTGAAA  694

seq1  AGGCATCAGGCACGTGTGTTGTTCTCAGGGAGCGTGTCCCAGGTGAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCAGGCACGTGTGTTGTTCTCAGGGAGCGTGTCCCAGGTGAAGGG  744

seq1  AACAGAGGCTCAGCTAGGGAAATGACTGGCTAGGGCAATGCTGGAGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGCTCAGCTAGGGAAATGACTGGCTAGGGCAATGCTGGAGCTCA  794

seq1  AGAGATACACTTTGTTCTTGGGATCCCTCCTGTCAGATCAGTGTGTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACACTTTGTTCTTGGGATCCCTCCTGTCAGATCAGTGTGTCTAT  844

seq1  ACCTGACCTGCCTCAGTTGCCCACAAAGATGTTCTTGGGACTGTGCCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACCTGCCTCAGTTGCCCACAAAGATGTTCTTGGGACTGTGCCTAC  894

seq1  CAGCATTCTCTGATGGAGGAGGGGTGATAGTAAGGGCCTGTGGGTACAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCTCTGATGGAGGAGGGGTGATAGTAAGGGCCTGTGGGTACAAC  944

seq1  CTCCCCAGATGCCCATGATCCCTTGGCTGATGTACAGGTCTCAAGGCCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGATGCCCATGATCCCTTGGCTGATGTACAGGTCTCAAGGCCCA  994

seq1  GGCAGCTCTGCATAGTGGGTGTGCTCTGTCATGTAGCTTGTGATCTAGGG  1050
      ||||||||||||||||||||||||||                  ||||||
seq2  GGCAGCTCTGCATAGTGGGTGTGCTCNNNNNNNNNNNNNNNNNNCTAGGG  1044

seq1  GTTCCATGAGATGAAGCAAAGACTAGGAATTC  1082
      ||||||||||||||||||||||||||||||||
seq2  GTTCCATGAGATGAAGCAAAGACTAGGAATTC  1076