BAC Information

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BAC

Clone NameB6Ng01-291K07
Chromosome6 (Build37)5 (Build37)
Map Location 125,037,171 - 125,038,295115,391,316 - 115,391,607
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92
Downstream geneChd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291K07.bB6Ng01-291K07.g
ACCGA088477GA088478
length1,130964
definitionB6Ng01-291K07.b B6Ng01-291K07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(125,037,171 - 125,038,295)(115,391,316 - 115,391,607)
sequence
gaattctggaaggacagaggattggagagggtcatgaccatcttgcagga
ggtctaagccattttgtgtgctaccaacaaagacaagctgctgctgacag
ttccttggtggtgtgtttggggaacaatgagattagagacgtgagtccag
ttttcagcccccattcagccacactgtgtccaaggtgagcataaagtaag
gggtcaggggagccatgagtggacaaggatgtcagaggaggacgatttgg
gaagaacagaaataatgaggcagattcaaggtgcggcaacagaagagcta
ggtctactcatcctagataaggaatccaggacagaccaaaatgcacagaa
gtcctagctggtgaaccgataagttttattggggttacttataggaatat
gggtgaggggttacttacaggaacagaaaggactcaaagacagctgtatc
accaaagcccaacccagcatgggtgacggctcacaaaagctgggaacctg
gagacaccctacagcctgcagatggctcagcaggttgaggccctttccag
gtgcctcagttgctctaaacttctaggcaacttggctggtttctacttct
accgggcagccgatctggtctccgaatcttctttagagctgggcttcatg
tagtccctctcaaccttgattgttaactctcacaagggataggcctaatg
aatttggtcagttttaggcacttcctgaaactattttgtgtgtttacctt
cctgcttaaggagattccccaccgggtggaatgtttcaatttcagaggaa
acctttacacaacaaggtattaggattattatgggctggcaaggccttag
gtggcctgagggagaagcagctggggtggcactggctggatgtcccggaa
ggggatggctagtttgttaagactgaaaagaaagagtttaggaagccaac
tgagccacttcctggtggtgtgacctttagacctcacagtcgccagtgtt
tcctcagtgaaatgaggctcatcagaggcccgtataataacctaaataaa
aagaggcctcctagaaaagcatgcttagagcacatggtggatcttaacac
cttcagagctgaggcaagaagaatgagagc
gaattcaattgccaacagccacatgaaggctcacaaccatctgtacagtg
tactcatatacataaaataaattaattaattaaaaaaaaacacacacaca
caaaatgatgaattcaggcggatttctgagtttgaggccagcctggtcta
caaagtgaattccaagacagccagggctatacagagaaaccctgtctaga
aaaaacaaaacaaaacaaacaaaacaaaataaaacaaaacaaaataaaaa
tgatgaattcataaagttcttaggtaaatggacagaactagaaaatatca
tcctgagtgaggtaacccagtcacaaaagaacacacatgatatgcactct
cactgataagaggatattagcccagaaacttagaatgcccaagatacaat
tcacaaaccacatgaaactcaagaaggaagaccaacgtgtggaagcttcg
gtccttcttagaatataacaaaatactcacaggagaaaatagggagataa
agtgtagagcagagactgaaggaaaggccatccagagactgtctcatccc
atatacagttatcaaacctagacactattgtggatgccaagaagtgcatc
tgacaggagcctgatatggctgtctcctgagagaccctgccagagcctta
caaatacagaggcagatgctcgcagtcaaccattggactgagcacagggt
ccctaatagagaggagttagagaaaggactgaaggagtttaaggggtttg
taaccccataggaagaacaacaatatcaacccatcagatcccccagagct
ctcagggactaaaccaccaaccaaagagtacacatggagggacccttggc
tccagccacatatgtagcagaggatagccttgtcaggcatcaatgggagg
agaggaccttagtcctatgaaggctggatagatgccccagtgtagggaat
caagggcagagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_125037171_125038295
seq2: B6Ng01-291K07.b_48_1177 (reverse)

seq1  GCTCTCAATCCTCCTGCCTCAGCTTCTGAA-GTGTTAAGATC--ACATGT  47
      ||||||| || || ||||||||| |||||| |||||||||||   |||||
seq2  GCTCTCATTCTTCTTGCCTCAGC-TCTGAAGGTGTTAAGATCCACCATGT  49

seq1  GCTCT-AGCATGCTTTTCTAGGGAGCCTCTTTTTATTTA-GTTATTATAC  95
      ||||| ||||||||||||||||  ||||||||||||||| ||||||||||
seq2  GCTCTAAGCATGCTTTTCTAGGAGGCCTCTTTTTATTTAGGTTATTATAC  99

seq1  GGGCCTCTGATGAGCCTCATTTCACTGAGGAAACACTGGCGACTGTGAGG  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTGATGAGCCTCATTTCACTGAGGAAACACTGGCGACTGTGAGG  149

seq1  TCTAAAGGTCACACCACCAGGAAGTGGCTCAGTTGGCTTCCTAAACTCTT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGGTCACACCACCAGGAAGTGGCTCAGTTGGCTTCCTAAACTCTT  199

seq1  TCTTTTCAGTCTTAACAAACTAGCCATCCCCTTCC-GGACATCCAGCCAG  244
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTTTTCAGTCTTAACAAACTAGCCATCCCCTTCCGGGACATCCAGCCAG  249

seq1  TGCCACCCCAGCTGCTTCTCCCTCAGGCCACCTAAGGCCTTGCCAGCCCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCCCAGCTGCTTCTCCCTCAGGCCACCTAAGGCCTTGCCAGCCCA  299

seq1  TAATAATCCTAATACCTTGTTGTGTAAAGGTTTCCTCTGAAATTGAAACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATCCTAATACCTTGTTGTGTAAAGGTTTCCTCTGAAATTGAAACA  349

seq1  TTCCACCCGGTGGGGAATCTCCTTAAGCAGGAAGGTAAACACACAAAATA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCCGGTGGGGAATCTCCTTAAGCAGGAAGGTAAACACACAAAATA  399

seq1  GTTTCAGGAAGTGCCTAAAACTGACCAAATTCATTAGGCCTATCCCTTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGAAGTGCCTAAAACTGACCAAATTCATTAGGCCTATCCCTTGT  449

seq1  GAGAGTTAACAATCAAGGTTGAGAGGGACTACATGAAGCCCAGCTCTAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTAACAATCAAGGTTGAGAGGGACTACATGAAGCCCAGCTCTAAA  499

seq1  GAAGATTCGGAGACCAGATCGGCTGCCCGGTAGAAGTAGAAACCAGCCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTCGGAGACCAGATCGGCTGCCCGGTAGAAGTAGAAACCAGCCAA  549

seq1  GTTGCCTAGAAGTTTAGAGCAACTGAGGCACCTGGAAAGGGCCTCAACCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTAGAAGTTTAGAGCAACTGAGGCACCTGGAAAGGGCCTCAACCT  599

seq1  GCTGAGCCATCTGCAGGCTGTAGGGTGTCTCCAGGTTCCCAGCTTTTGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCATCTGCAGGCTGTAGGGTGTCTCCAGGTTCCCAGCTTTTGTG  649

seq1  AGCCGTCACCCATGCTGGGTTGGGCTTTGGTGATACAGCTGTCTTTGAGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTCACCCATGCTGGGTTGGGCTTTGGTGATACAGCTGTCTTTGAGT  699

seq1  CCTTTCTGTTCCTGTAAGTAACCCCTCACCCATATTCCTATAAGTAACCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGTTCCTGTAAGTAACCCCTCACCCATATTCCTATAAGTAACCC  749

seq1  CAATAAAACTTATCGGTTCACCAGCTAGGACTTCTGTGCATTTTGGTCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAACTTATCGGTTCACCAGCTAGGACTTCTGTGCATTTTGGTCTG  799

seq1  TCCTGGATTCCTTATCTAGGATGAGTAGACCTAGCTCTTCTGTTGCCGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATTCCTTATCTAGGATGAGTAGACCTAGCTCTTCTGTTGCCGCA  849

seq1  CCTTGAATCTGCCTCATTATTTCTGTTCTTCCCAAATCGTCCTCCTCTGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAATCTGCCTCATTATTTCTGTTCTTCCCAAATCGTCCTCCTCTGA  899

seq1  CATCCTTGTCCACTCATGGCTCCCCTGACCCCTTACTTTATGCTCACCTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGTCCACTCATGGCTCCCCTGACCCCTTACTTTATGCTCACCTT  949

seq1  GGACACAGTGTGGCTGAATGGGGGCTGAAAACTGGACTCACGTCTCTAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGTGTGGCTGAATGGGGGCTGAAAACTGGACTCACGTCTCTAAT  999

seq1  CTCATTGTTCCCCAAACACACCACCAAGGAACTGTCAGCAGCAGCTTGTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGTTCCCCAAACACACCACCAAGGAACTGTCAGCAGCAGCTTGTC  1049

seq1  TTTGTTGGTAGCACACAAAATGGCTTAGACCTCCTGCAAGATGGTCATGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGGTAGCACACAAAATGGCTTAGACCTCCTGCAAGATGGTCATGA  1099

seq1  CCCTCTCCAATCCTCTGTCCTTCCAGAATTC  1125
      |||||||||||||||||||||||||||||||
seq2  CCCTCTCCAATCCTCTGTCCTTCCAGAATTC  1130

seq1: chr5_115391316_115391607
seq2: B6Ng01-291K07.g_88_281

seq1  CCACATGGTGGCTCACAACCATCTGTATTGGGATCTGGCGCCCTCTTCTG  50
      |||||||  ||||||||||||||||                         
seq2  CCACATGAAGGCTCACAACCATCTG-------------------------  25

seq1  GTGTGTCTGAAGACAGCTACAGTATTCATTCATATACATAAAATAAAT--  98
                       |||||| |  | |||||||||||||||||||  
seq2  -----------------TACAGTGT--ACTCATATACATAAAATAAATTA  56

seq1  ----CTTAAAAAAAATGTTGCCTGGTAGTGGTGGTGTACACCTTTAATCC  144
           ||||||||||                      ||||    |  | 
seq2  ATTAATTAAAAAAAA----------------------ACAC----ACACA  80

seq1  CAGCACTTGGGTGGCAGAGGCAGTCGGATTTCTGAGTTCAAGGCCAGCCT  194
      || ||    | ||    |  ||| ||||||||||||||  ||||||||||
seq2  CA-CAAAATGATG---AATTCAGGCGGATTTCTGAGTTTGAGGCCAGCCT  126

seq1  GGTCTACAAAGTGAGTTCCAGGACAGCCAGGGATATACAGAGAAACTCTG  244
      |||||||||||||| ||||| ||||||||||| ||||||||||||| |||
seq2  GGTCTACAAAGTGAATTCCAAGACAGCCAGGGCTATACAGAGAAACCCTG  176

seq1  TCTCGGGAAAAAAACAAAA-ACAAAAAACAAAAAAAAAAAAACAAAACA  292
      ||| |   ||||||||||| |                            
seq2  TCTAG---AAAAAACAAAACA----------------------------  194