BAC Information

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BAC

Clone NameB6Ng01-293N24
Chromosome6 (Build37)
Map Location 18,364,402 - 18,476,763
singlet/doubletdoublet
Overlap geneCttnbp2
Upstream geneMet, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293N24.bB6Ng01-293N24.g
ACCGA090148GA090149
length1,1311,140
definitionB6Ng01-293N24.b B6Ng01-293N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,475,631 - 18,476,763)(18,364,402 - 18,365,512)
sequence
gaattctcaaggagaggaatctgtgcacatagacaaccaggtagatagta
ccctttggtttttctgagccttgtgacattgatagagaatgtttgttggc
atagcaggtgcactgttggcataaacaagacctgacagaagctctaagaa
acttatagtagactccacctcattaaggcaatagttgaaaatcaagggaa
ggagctggtccagaaataatgagtgttcaatcttctcagattgagagtgt
ccccccaaatctgcatgttgtgttgacatcccaaccctgaatgtgtcctt
atctgaagacagagccattgagatagaactagagctagattagatcgtga
gggttgagagtcatgagatgagattagtgagtaaacaagaaattccttct
cctctatcccttcatctccatccttctcactcttgttacacacacacaca
cacacacacacacacacacacacacacacacacctatgaaaggccagtga
ggacatactgagtcctcaagtgagggcactcacctaaacactgaccatct
ggatgtagtactttttagcctctaaagctgtaagaaatgcttcttttgtt
tggtttttgaaaccacccagtctatggtcatctgtaaaagcagcccaaaa
tggataagaccatcgctcacattttgagtagtgacctcctattcccatcc
catatattaagtccccactattaagtatggcttattactagtgacactcc
agactgttccaaaacctgtaacaatcacacaggcaaaaaattggaaagca
gaaaatagatacgtttcctttagcacaggcaagtagaccaatcttttttt
tttttttttcatgtttattaaattactggcatacctcttgatagcaaatg
gcagggctattctaccagacataggtaatgagtgttttgtttttggtgct
gagtatcaaacccagacccacacattcaaggggagttagctatattctac
atccaattttccttcttctgaggtttttagattgggaactaatgattgtg
tagagtgtgtaatcattggaacctccggtacttcataaacttatggccaa
acggtcatgtgtgtgttatggaaattgagtg
gaattcctagccatatatccctgtggtacccgtactttggaggtgaaggc
aggaaaattaagagtttgagaacagtctgggatatatatatatatatata
tatatatatatatgtatgtatatatgcgcgtgtatacatatatatatatc
aagaactcacagctgaaaagtctgacttcaattccagcaactcacataca
atctcaaatgtatctaaataatatatagacatgtgaagcaaagaatactt
catttgcataattttccagatgctggggatggaatctagggtcttgatct
tgctggacaactccagcccaagtgcttcatttcagtttggtgatgtaagt
gaagactcttgggttaagaaggaaaagttgtctcatggagtgaaaagaag
aatgaggtatcttcaccagaccgcattttcaacttggtaaaacaaagtga
aagacttttgcttcagtcagctgtttttgctgtctcccggtaatggatta
atatttttacaagaataatgagaccgccaagtaagagaagcaagttaata
gaaaccactagaagccaacaaacgaggcatgtgcttcctaatattcactc
ccacccaaagacaggcagacaaaaaagtatacaagtgacaacacacatac
atacacacacacacacacacacacacacacacacacacgtgtatttgagt
tgctggaactgaaatatctgtacctgtgaaatatttttcttccttctcct
ctttctgtaggatggaacttggggctttgcatgtgccagcaactgccctt
tcctccccagccctcggtctttaatgactgtcaagcagcatgcattcagg
gcacccttgccagcacagccaaatgagacaactctgcaaagcccttctct
acttcttggtgtagaaccttcacattttgtaattttactaataagtcaac
atagtcatttgcccagttggagaaaaacaatccccaattaattaagttaa
gcaggtgaagttatcagtgccacacccgcaaatcctaggtctaaagatta
attaggtgatgttactaaattattttttaaaactgataagagagccttaa
acacatatttgcaaggtctcctcaagtatgacttctttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18475631_18476763
seq2: B6Ng01-293N24.b_46_1176 (reverse)

seq1  CACTCATTTCTCATAACCACACCACATGACTGTCT-GCCATAAGTTTTTA  49
      |||||| ||  ||||| |||| |||||||| || | |||||||||||   
seq2  CACTCAATTTCCATAA-CACA-CACATGACCGTTTGGCCATAAGTTT---  45

seq1  ATGGAAAGTACCGGA-GTTCAAATGATTTCACAACACTCAAAACACATCA  98
      |||  |||||||||| |||| ||||||| |   |||||| | ||| ||||
seq2  ATG--AAGTACCGGAGGTTCCAATGATTAC---ACACTCTACACA-ATCA  89

seq1  TTTAGTT-CCAATCTTAAAAAACCT-AGAAGAAGGAAAATTGGATGTAAG  146
       |||||| |||||||  |||||||| ||||||||||||||||||||| ||
seq2  -TTAGTTCCCAATCT--AAAAACCTCAGAAGAAGGAAAATTGGATGT-AG  135

seq1  AATATAGCTAACTCCCCTGGATTGTGTGGGTCTGGGTTTGATACTCAGCA  196
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  AATATAGCTAACTCCCCTTGAATGTGTGGGTCTGGGTTTGATACTCAGCA  185

seq1  CCAAAA--CAAACACTCA-TACCTATGTCTGGTAG-ATAG-CCTGCCATT  241
      ||||||   ||||||||| |||||||||||||||| |||| |||||||||
seq2  CCAAAAACAAAACACTCATTACCTATGTCTGGTAGAATAGCCCTGCCATT  235

seq1  TGCTATCAAGAGGTATGCCAGTAATTT-ATAAACATG--AAAAAAAAAAA  288
      ||||||||||||||||||||||||||| |||||||||  |||||||||||
seq2  TGCTATCAAGAGGTATGCCAGTAATTTAATAAACATGAAAAAAAAAAAAA  285

seq1  AAAGATTGGTCTACTTGCCTGTGCTAAAGG-AACGTATCTATTTTCTGCT  337
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGATTGGTCTACTTGCCTGTGCTAAAGGAAACGTATCTATTTTCTGCT  335

seq1  TTCCAATTTTTTGCCTGTGTGATTGTTACAGGTTTTGGAACAGTCTGGAG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTTTTTGCCTGTGTGATTGTTACAGGTTTTGGAACAGTCTGGAG  385

seq1  TGTCACTAGTAATAAGCCATACTTAATAGTGGGGACTTAATATATGGGAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTAGTAATAAGCCATACTTAATAGTGGGGACTTAATATATGGGAT  435

seq1  GGGAATAGGAGGTCACTACTCAAAATGTGAGCGATGGTCTTATCCATTTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAGGAGGTCACTACTCAAAATGTGAGCGATGGTCTTATCCATTTT  485

seq1  GGGCTGCTTTTACAGATGACCATAGACTGGGTGGTTTCAAAAACCAAACA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTTTTACAGATGACCATAGACTGGGTGGTTTCAAAAACCAAACA  535

seq1  AAAGAAGCATTTCTTACAGCTTTAGAGGCTAAAAAGTACTACATCCAGAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCATTTCTTACAGCTTTAGAGGCTAAAAAGTACTACATCCAGAT  585

seq1  GGTCAGTGTTTAGGTGAGTGCCCTCACTTGAGGACTCAGTATGTCCTCAC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTGTTTAGGTGAGTGCCCTCACTTGAGGACTCAGTATGTCCTCAC  635

seq1  TGGCCTTTCATAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTCATAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  685

seq1  TGTGTGTGTAACAAGAGTGAGAAGGATGGAGATGAAGGGATAGAGGAGAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTAACAAGAGTGAGAAGGATGGAGATGAAGGGATAGAGGAGAA  735

seq1  GGAATTTCTTGTTTACTCACTAATCTCATCTCATGACTCTCAACCCTCAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTCTTGTTTACTCACTAATCTCATCTCATGACTCTCAACCCTCAC  785

seq1  GATCTAATCTAGCTCTAGTTCTATCTCAATGGCTCTGTCTTCAGATAAGG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAATCTAGCTCTAGTTCTATCTCAATGGCTCTGTCTTCAGATAAGG  835

seq1  ACACATTCAGGGTTGGGATGTCAACACAACATGCAGATTTGGGGGGACAC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCAGGGTTGGGATGTCAACACAACATGCAGATTTGGGGGGACAC  885

seq1  TCTCAATCTGAGAAGATTGAACACTCATTATTTCTGGACCAGCTCCTTCC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATCTGAGAAGATTGAACACTCATTATTTCTGGACCAGCTCCTTCC  935

seq1  CTTGATTTTCAACTATTGCCTTAATGAGGTGGAGTCTACTATAAGTTTCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTTCAACTATTGCCTTAATGAGGTGGAGTCTACTATAAGTTTCT  985

seq1  TAGAGCTTCTGTCAGGTCTTGTTTATGCCAACAGTGCACCTGCTATGCCA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTTCTGTCAGGTCTTGTTTATGCCAACAGTGCACCTGCTATGCCA  1035

seq1  ACAAACATTCTCTATCAATGTCACAAGGCTCAGAAAAACCAAAGGGTACT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATTCTCTATCAATGTCACAAGGCTCAGAAAAACCAAAGGGTACT  1085

seq1  ATCTACCTGGTTGTCTATGTGCACAGATTCCTCTCCTTGAGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTGGTTGTCTATGTGCACAGATTCCTCTCCTTGAGAATTC  1131

seq1: chr6_18364402_18365512
seq2: B6Ng01-293N24.g_65_1204

seq1  GAATTCCTAGCCATATATCCCTGTGGTACCCGTACTTTGGAGGTGAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCCATATATCCCTGTGGTACCCGTACTTTGGAGGTGAAGGC  50

seq1  AGGAAAATTAAGAGTTTGAGAACAGTCTGGGATATATATATATATATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATTAAGAGTTTGAGAACAGTCTGGGATATATATATATATATATA  100

seq1  TATATATATATATGTATGTATATATACACATATATACATATATATATATC  150
      ||||||||||||||||||||||||| | | | ||||||||||||||||||
seq2  TATATATATATATGTATGTATATATGCGCGTGTATACATATATATATATC  150

seq1  AAGAACTCACAGCTGAAAAATCTTACTTCAATTCCAGCAACTCACATACA  200
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  AAGAACTCACAGCTGAAAAGTCTGACTTCAATTCCAGCAACTCACATACA  200

seq1  ATCTCAAATGTATCTAAATAATATATAGACATGTGAAGCAAAGAATACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAATGTATCTAAATAATATATAGACATGTGAAGCAAAGAATACTT  250

seq1  CATTTGCATAATTTTCCAGATGCTGGGGATGGAATCTAGGGTCTTGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCATAATTTTCCAGATGCTGGGGATGGAATCTAGGGTCTTGATCT  300

seq1  TGCTGGACAACTCCAGCCCAAGTGCTTCATTTCAGTTTGGTGATGTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACAACTCCAGCCCAAGTGCTTCATTTCAGTTTGGTGATGTAAGT  350

seq1  GAAGACTCTTGGGTTAAGAAGGAAAAGTTGTCTCATGGAGTGAAAAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTCTTGGGTTAAGAAGGAAAAGTTGTCTCATGGAGTGAAAAGAAG  400

seq1  AATGAGGTATCTTCACCAGACCGCATTTTCAACTTGGTAAAACAAAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTATCTTCACCAGACCGCATTTTCAACTTGGTAAAACAAAGTGA  450

seq1  AAGACTTTTGCTTCAGTCAGCTGTTTTTGCTGTCTCCCGGTAATGGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTTGCTTCAGTCAGCTGTTTTTGCTGTCTCCCGGTAATGGATTA  500

seq1  ATATTTTTACAAGAATAATGAGACCGCCAAGTAAGAGAAGCAAGTTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTACAAGAATAATGAGACCGCCAAGTAAGAGAAGCAAGTTAATA  550

seq1  GAAACCACTAGAAGCCAACAAACGAGGCATGTGCTTCCTAATATTCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCACTAGAAGCCAACAAACGAGGCATGTGCTTCCTAATATTCACTC  600

seq1  CCACCCAAAGACAGGCAGACAAAAAAGTATACAAGTGACAACACACATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAAAGACAGGCAGACAAAAAAGTATACAAGTGACAACACACATAC  650

seq1  ATACACACACACACACACACACACACACACACACACACGTGTATTTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACACACACACACACACACACACACGTGTATTTGAGT  700

seq1  TGCTGGAACTGAAATATCTGTACCTGTGAAATA-TTTTCTTCCTTCTCCT  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCTGGAACTGAAATATCTGTACCTGTGAAATATTTTTCTTCCTTCTCCT  750

seq1  CTTTCTGTAGGATGGAACTTGGGGCTTTGCATGTGCCAGCAACTG-CCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTCTGTAGGATGGAACTTGGGGCTTTGCATGTGCCAGCAACTGCCCTT  800

seq1  TCCTCCCCAGCCCTCGGTCTTTAATGACTGTCAAGCAGCATGCATTCA-G  847
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCTCCCCAGCCCTCGGTCTTTAATGACTGTCAAGCAGCATGCATTCAGG  850

seq1  GCA-CCTTG-CAGCACAGCC-AATGAGAC-ACTCTGCAAAG-CCTTCTCT  892
      ||| ||||| |||||||||| |||||||| ||||||||||| ||||||||
seq2  GCACCCTTGCCAGCACAGCCAAATGAGACAACTCTGCAAAGCCCTTCTCT  900

seq1  AC-TCTTGGTGTAGAA-CTTCACATTTTGTAA-TTTACTA--TAGTCAAC  937
      || ||||||||||||| ||||||||||||||| |||||||   |||||||
seq2  ACTTCTTGGTGTAGAACCTTCACATTTTGTAATTTTACTAATAAGTCAAC  950

seq1  ATAGTCATT--GCCAGT--GAGAAAA--CATCCCCAA-TAATTAAGTT-A  979
      |||||||||   |||||  |||||||   |||||||| |||||||||| |
seq2  ATAGTCATTTGCCCAGTTGGAGAAAAACAATCCCCAATTAATTAAGTTAA  1000

seq1  GCAGGTG-AGTTATCAGTG-CACA-CCGCAAATACTA-GTCTAAAGATAA  1025
      ||||||| ||||||||||| |||| |||||||| ||| |||||||||| |
seq2  GCAGGTGAAGTTATCAGTGCCACACCCGCAAATCCTAGGTCTAAAGATTA  1050

seq1  TTTAGGTGATGTTACTAAATTATTTTTTAAAACTGAT-AGAGAG-CTATA  1073
       |||||||||||||||||||||||||||||||||||| |||||| ||  |
seq2  ATTAGGTGATGTTACTAAATTATTTTTTAAAACTGATAAGAGAGCCTTAA  1100

seq1  ACACATATTTGCAA-GTCTCTCAAAGTATGAC-TCTTTGA  1111
      |||||||||||||| |||||   ||||||||| |||||||
seq2  ACACATATTTGCAAGGTCTCCTCAAGTATGACTTCTTTGA  1140