BAC Information

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BAC

Clone NameB6Ng01-294C20
Chromosome6 (Build37)
Map Location 103,910,606 - 104,052,191
singlet/doubletdoublet
Overlap geneLOC100043345
Upstream geneChl1, LOC666141
Downstream geneCntn6, LOC384470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294C20.bB6Ng01-294C20.g
ACCGA090373GA090374
length1,0521,179
definitionB6Ng01-294C20.b B6Ng01-294C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,910,606 - 103,911,665)(104,050,997 - 104,052,191)
sequence
gaattctttgacaataccaagtgatggcaagggggtgggacaatcgcacc
actcttattttgataaatagaatataaatgaggaatatgttattgaaaat
agtttgccatagttttataaatttagccatctggttattgaattgcataa
caatcaagttcctgagtatttatctcagagaactatatcttttgtttttg
tgaaaaacatggacaaatatctttaaagctctatttgtaatagctctaag
ccagaactacagaactgtctttcattgaaaagtgaaccatcactacaata
taatactatgtgggcatcaaagagaataaactgctaaaatatacaacata
gaagaagccaaaattttatgttaaatataccttacctttaatctaacaag
tctatttaacatatgattccactctgtgacagtctcagtatagcaaactt
gtggtgataagaatagaagggtggttgctgggactgtggttggggggggg
cactgatatatcagtgctgtattgtctattttctattttgacatggttgt
attcaagtcctttttctctttttcttcttttatttttcatacattgcaga
ccaactgcagttttccctccctctactcatctgggtccctgcttccactg
cctccccttttccccagatctactctccttctctttcctttaaagaagaa
aaaaaaaataccttccaatgatccactgaaatagggatcacagtaagact
atgtccaaatatgcatatcaaggttggattaagcattccagcagaaggaa
aagaatccaagacacatgcaaaaacccagagacagtcttcactcccactg
ttgggagtcccacaagaataccaatttatacagccacaacacatatgcag
agaacctagctcagactcatacagtgttcatgttgtgctttaatagatca
aatgaagcagatttgctgatacagtggactgtgttccatggttccctcat
cctctggctcttatatcctcctcctcctcctcttctgtggagtcacctgc
tt

gaattcactattgtctacagaattattttgttggcttagattttgttatt
aaatcttcctcagcttccatcattcaaatttatgtggaaagttagggtaa
tttttgtgtgaacactgatttttatggacaaacccattttcatctatttt
cctgtatttttatgccttgatttgaaataatcatctctattttctaactt
agcatatcaacacagtgatatgttttcctttaataagtaaaattgtcttc
ataatattttttttatgaattaccagtttttcttgtctattttaatctca
ctcttaattggctgtgtttgttgttccgcacaatttggagataacagata
tttttaaatgtttctttattgtaaatgaaatgactccctgtatgtaagtt
tctcaatcttacttattacagtcattcgtttgagaaattttcatttgttt
gctttgacaataatgtttgtgtatcatcgcaacaaatattctacttcatt
gcaagggaacaaaatgtaatcagatatcttcctcgatcaaaactatttct
acttaattagatctatttgaagtttcttcaattaacaatttctcagaact
cattatgctattatcttcctcattttcctttataatttgatcaaaatatt
agtcacacctgcaactttggttgctcatttctaacaatatgtaataagta
ggtatctttctaattaaaacagcatatctctgtaaagtgttctttttata
gtaaattcctgttgctgctactacaaactcatacatatttagtagtttaa
gatgacttccatgcatcactttacatttatgggaatgtaatgtccaaaat
gagttaaattgtactaaaaccaatgtgatatcagcatttatgctcttttc
tgtagagcatatttttatctttcggaatgtagctgcctgctttcttcact
cagtaacttttacccagtgtgtctttacagcagaaagtgactaccatctc
acacatcatcattgatactgaccattctctcctttccttcaaatataaag
gtgcttggtgaatgaaatagcacatctgaaatagtcagttgtctttctta
atttatgaccaccattgtcatattaattctccttggaagaagttaactgg
acggtttttctacaaagttccgtttccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103910606_103911665
seq2: B6Ng01-294C20.b_48_1099

seq1  GAATTCTTTGACAATACCAAGTGATGGCAAGGGGGTGGGACAATCGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACAATACCAAGTGATGGCAAGGGGGTGGGACAATCGCACC  50

seq1  ACTCTTATTTTGATAAATAGAATATAAATGAGGAATATGTTATTGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTATTTTGATAAATAGAATATAAATGAGGAATATGTTATTGAAAAT  100

seq1  AGTTTGCCATAGTTTTATAAATTTAGCCATCTGGTTATTGAATTGCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCCATAGTTTTATAAATTTAGCCATCTGGTTATTGAATTGCATAA  150

seq1  CAATCAAGTTCCTGAGTATTTATCTCAGAGAACTATATCTTTTGTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGTTCCTGAGTATTTATCTCAGAGAACTATATCTTTTGTTTTTG  200

seq1  TGAAAAACATGGACAAATATCTTTAAAGCTCTATTTGTAATAGCTCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACATGGACAAATATCTTTAAAGCTCTATTTGTAATAGCTCTAAG  250

seq1  CCAGAACTACAGAACTGTCTTTCATTGAAAAGTGAACCATCACTACAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACTACAGAACTGTCTTTCATTGAAAAGTGAACCATCACTACAATA  300

seq1  TAATACTATGTGGGCATCAAAGAGAATAAACTGCTAAAATATACAACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTATGTGGGCATCAAAGAGAATAAACTGCTAAAATATACAACATA  350

seq1  GAAGAAGCCAAAATTTTATGTTAAATATACCTTACCTTTAATCTAACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCCAAAATTTTATGTTAAATATACCTTACCTTTAATCTAACAAG  400

seq1  TCTATTTAACATATGATTCCACTCTGTGACAGTCTCAGTATAGCAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTAACATATGATTCCACTCTGTGACAGTCTCAGTATAGCAAACTT  450

seq1  GTGGTGATAAGAATAGAAGGGTGGTTGCTGGGACTGTGGTTGGGGGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATAAGAATAGAAGGGTGGTTGCTGGGACTGTGGTTGGGGGGGGG  500

seq1  CACTGATATATCAGTGCTGTATTGTCTATTTTCTATTTTGACATGGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATATATCAGTGCTGTATTGTCTATTTTCTATTTTGACATGGTTGT  550

seq1  ATTCAAGTCCTTTTTCTCTTTTTCTTCTTTTATTTTTCATACATTGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTCCTTTTTCTCTTTTTCTTCTTTTATTTTTCATACATTGCAGA  600

seq1  CCAACTGCAGTTTTCCCTCCCTCTACTCATCTGGGTCCCTGCTTCCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGCAGTTTTCCCTCCCTCTACTCATCTGGGTCCCTGCTTCCACTG  650

seq1  CCTCCCCTTTTCCCCAGATCTACTCTCCTTCTCTTTCCTTTAAAGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTTTTCCCCAGATCTACTCTCCTTCTCTTTCCTTTAAAGAAGAA  700

seq1  AAAAAAAATACCTTCCAATGATCCACTGAAATA-GGATCACAGTAAGACT  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAAAAAATACCTTCCAATGATCCACTGAAATAGGGATCACAGTAAGACT  750

seq1  ATGTCCAAATATGCATATCAAGGTTGGATTAAGCATTCCAGCAGAAGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAAATATGCATATCAAGGTTGGATTAAGCATTCCAGCAGAAGGAA  800

seq1  AAGAATCCAAGACACATGCAAAAACCCAGAGACAGTCTTCACTCCCACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCAAGACACATGCAAAAACCCAGAGACAGTCTTCACTCCCACTG  850

seq1  TTGGGAGTCCCACAAGAATACCAATTTATACAGCCACAACACATATGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTCCCACAAGAATACCAATTTATACAGCCACAACACATATGCAG  900

seq1  AGAACCTAGCTCAGACTCATACAGTGTTCATGTTTGTTGCTTTAATAGAT  949
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  AGAACCTAGCTCAGACTCATACAGTGTTCATGTT--GTGCTTTAATAGAT  948

seq1  CAAATGAAGCAGATTTGCTGATACAGTGGACTGTGTTTCCATGGTTCCCT  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAATGAAGCAGATTTGCTGATACAGTGGACTGTG-TTCCATGGTTCCCT  997

seq1  CCATCCCTCTGGCTCTTATAATCCTTCCTCCTCCTCCTCTTCTGTGAGGT  1049
       ||| |||||||||||||| |||| ||||||||||||||||||||| |  
seq2  -CAT-CCTCTGGCTCTTAT-ATCC-TCCTCCTCCTCCTCTTCTGTG-GAG  1042

seq1  TCACCTTGCTT  1060
      ||||| |||||
seq2  TCACC-TGCTT  1052


seq1: chr6_104050997_104052191
seq2: B6Ng01-294C20.g_68_1246 (reverse)

seq1  TGGGAAACGGAAATTGGTAGAAAAACGGTCCCAAGTAACACTTCTTTCCA  50
      |||||||||||| || |||||||||| ||||  ||| | ||||| |||||
seq2  TGGGAAACGGAACTTTGTAGAAAAACCGTCC--AGTTA-ACTTC-TTCCA  46

seq1  AGGAGGAATTAATATTGACAATTGGGTGGTCATAAATTAAG-AAGACAAC  99
      |||| ||||||||| |||||||  ||||||||||||||||| ||||||| 
seq2  AGGA-GAATTAATA-TGACAAT--GGTGGTCATAAATTAAGAAAGACAA-  91

seq1  CTGAAACTA-TTCAGATGGTGCTAATTCTATCACC-AGCACCCTTTATAT  147
      |||  |||| ||||||| |||||| |||  ||||| |||| |||||||||
seq2  CTG--ACTATTTCAGAT-GTGCTATTTCATTCACCAAGCA-CCTTTATAT  137

seq1  GTGAAAGGGAAAGAGAGAATGGTCAGTATCAATGATGATGTGTGAGATTG  197
       || |||| || ||||||||||||||||||||||||||||||||||||  
seq2  TTG-AAGGAAAGGAGAGAATGGTCAGTATCAATGATGATGTGTGAGAT--  184

seq1  GTTAGTCACTTTCTTGCTGTAAAGACACAACTGGGTAAAAGTTACTGAGT  247
      | ||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  GGTAGTCACTTTC-TGCTGTAAAGACAC-ACTGGGTAAAAGTTACTGAGT  232

seq1  GAAGAAAGCAGGCAGCCTACATTCCGAAAGATAAAAATTATGCTCTACAG  297
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  GAAGAAAGCAGGCAG-CTACATTCCGAAAGATAAAAA-TATGCTCTACAG  280

seq1  AAAAGAGCAT-AATGCTGATATCACATTGGTTTTAGTACAATTTAACTCA  346
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCATAAATGCTGATATCACATTGGTTTTAGTACAATTTAACTCA  330

seq1  TTTTGGACATTACATTCCCATAAATGTAAAGTGATGCATGGAAGTCATCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGACATTACATTCCCATAAATGTAAAGTGATGCATGGAAGTCATCT  380

seq1  TAAACTACTAAATATGTATGAGTTTGTAGTAGCAGCAACAGGAATTTACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACTAAATATGTATGAGTTTGTAGTAGCAGCAACAGGAATTTACT  430

seq1  ATAAAAAGAACACTTTACAGAGATATGCTGTTTTAATTAGAAAGATACCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGAACACTTTACAGAGATATGCTGTTTTAATTAGAAAGATACCT  480

seq1  ACTTATTACATATTGTTAGAAATGAGCAACCAAAGTTGCAGGTGTGACTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTACATATTGTTAGAAATGAGCAACCAAAGTTGCAGGTGTGACTA  530

seq1  ATATTTTGATCAAATTATAAAGGAAAATGAGGAAGATAATAGCATAATGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGATCAAATTATAAAGGAAAATGAGGAAGATAATAGCATAATGA  580

seq1  GTTCTGAGAAATTGTTAATTGAAGAAACTTCAAATAGATCTAATTAAGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGAAATTGTTAATTGAAGAAACTTCAAATAGATCTAATTAAGTA  630

seq1  GAAATAGTTTTGATCGAGGAAGATATCTGATTACATTTTGTTCCCTTGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTTTTGATCGAGGAAGATATCTGATTACATTTTGTTCCCTTGCA  680

seq1  ATGAAGTAGAATATTTGTTGCGATGATACACAAACATTATTGTCAAAGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTAGAATATTTGTTGCGATGATACACAAACATTATTGTCAAAGCA  730

seq1  AACAAATGAAAATTTCTCAAACGAATGACTGTAATAAGTAAGATTGAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGAAAATTTCTCAAACGAATGACTGTAATAAGTAAGATTGAGAA  780

seq1  ACTTACATACAGGGAGTCATTTCATTTACAATAAAGAAACATTTAAAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACATACAGGGAGTCATTTCATTTACAATAAAGAAACATTTAAAAAT  830

seq1  ATCTGTTATCTCCAAATTGTGCGGAACAACAAACACAGCCAATTAAGAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTATCTCCAAATTGTGCGGAACAACAAACACAGCCAATTAAGAGT  880

seq1  GAGATTAAAATAGACAAGAAAAACTGGTAATTCATAAAAAAAATATTATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAAAATAGACAAGAAAAACTGGTAATTCATAAAAAAAATATTATG  930

seq1  AAGACAATTTTACTTATTAAAGGAAAACATATCACTGTGTTGATATGCTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATTTTACTTATTAAAGGAAAACATATCACTGTGTTGATATGCTA  980

seq1  AGTTAGAAAATAGAGATGATTATTTCAAATCAAGGCATAAAAATACAGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAAATAGAGATGATTATTTCAAATCAAGGCATAAAAATACAGGA  1030

seq1  AAATAGATGAAAATGGGTTTGTCCATAAAAATCAGTGTTCACACAAAAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATGAAAATGGGTTTGTCCATAAAAATCAGTGTTCACACAAAAAT  1080

seq1  TACCCTAACTTTCCACATAAATTTGAATGATGGAAGCTGAGGAAGATTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAACTTTCCACATAAATTTGAATGATGGAAGCTGAGGAAGATTTA  1130

seq1  ATAACAAAATCTAAGCCAACAAAATAATTCTGTAGACAATAGTGAATTC  1195
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAATCTAAGCCAACAAAATAATTCTGTAGACAATAGTGAATTC  1179


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