BAC Information

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BAC

Clone NameB6Ng01-296G05
Chromosome13 (Build37)6 (Build37)
Map Location 6,475,583 - 6,476,759139,279,251 - 139,279,453
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
Downstream genePitrm1, Pfkp, LOC100039532, LOC667611, EG623516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296G05.bB6Ng01-296G05.g
ACCGA092012GA092013
length1,179972
definitionB6Ng01-296G05.b B6Ng01-296G05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,475,583 - 6,476,759)(139,279,251 - 139,279,453)
sequence
gaattccagttaactgagggtaactctcctagtattccttaagatctttt
aatataatgtgatgaatatggacttaggagattataagcatcactattat
tgtgatttgaagaagatgtggcttcataggatctctgtggacacactggg
aggtaggggtgaagtccatacactgtcacctaagtgggcttgcagtggag
agatggctcagttggaaaagtgcctgctgtgaacacatgaaaacctgagt
ttatattgctgatattcacatagatagctgtttatggtcacacacatctc
taatcgattactggggaaagggagagaaaagcagaacccctgagtttact
ggctgatcagtctaaccaataggtgattggggttcatcaagaaaccctgt
cttaaagagaaaaggtggagaagaatcatggaagataccagctatcaaac
tctagcctccacacaaaagggtgcacatatgcatatagtcctgcacacac
atgtgtgcacatatacacactgaacatgcatagacatggacacaaaacta
cacataagcggcaggactgtcagatttgaaaagaaatacatacaaacgtt
tggaagtaggtcaaatgtgaatttcctacagacagcaaatacatttttca
acgtaggcaaactccatgtaatattaggggcgcactaatgcatcctgcat
cctgacctgaaattcaaacttaactgggcatcgagacaatgcctgccagt
gattgctttacataagcaaaaagttaatagtatccagaaaggcattgaga
aaaaaaaaccaacaacccatgaccaaaacccagcataacatataaaagac
ttaagctaggaaggatccaccaaccttccctttgctgctttcacccacta
attgtctgtttaatgcagcatccctgagcagccactggactggacccatc
tgctcaacagctcatacatttccctagatccagacacctcatacttgggt
tacgattcactaaccacattgtctcacacaatgttagagccagtgtcttc
tgctcaacagctatggttattgaacatgaatgcatgaacccattgttgaa
gccaaagcatctattgtctcctgggactggatcgaaccaccaatgaagtt
cttcaagccatctggagagaataactctg

gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgaggtttttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaagctttggagtttca
tgaggtcccatttgtcaattctcgatcttacagcgcaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcaaggattttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagagaggaacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaaaagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggattaatcttgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatagtagcccaaaact
taggatacccaagatataagatacaatttgctaaacgcatgaaactcaag
aagaatgaagaccaaagtgtggacactgtgccccttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgtgacga
aaggatggaccatctagagactgccatatccagggatccaccccataatc
agcttccaaacgctgacaccattgcatccactagcaagattttatcgaaa
ggatccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6475583_6476759
seq2: B6Ng01-296G05.b_45_1223 (reverse)

seq1  CAGAGTTATTC-CTCCAGAGGGCTGGGAGAAAAACCTCAATGGTGGTCTG  49
      ||||||||||| ||||||| ||||    ||| ||| ||| |||||||  |
seq2  CAGAGTTATTCTCTCCAGATGGCT---TGAAGAACTTCATTGGTGGTTCG  47

seq1  ATCAAG-CCCAGGAG-CAAT-GATTGCTTGGC-TCCACCATGGGGTCATG  95
      ||| || |||||||| |||| |||   ||||| || || ||||| |||||
seq2  ATCCAGTCCCAGGAGACAATAGATGCTTTGGCTTCAACAATGGGTTCATG  97

seq1  CATTCATGT--CATA--CATAGCTGGTGAGGCAG-AGACACTGGGCTCCT  140
      |||||||||   |||  |||||||| ||| |||| ||||||| |||| ||
seq2  CATTCATGTTCAATAACCATAGCTGTTGA-GCAGAAGACACT-GGCT-CT  144

seq1  AACCTTGTGGTGGAGACAAATTGTGGTTAGTGAATCGTAA-CCAAGTATG  189
      ||| |||||   |||||||  ||||||||||||||||||| |||||||||
seq2  AACATTGTG--TGAGACAA--TGTGGTTAGTGAATCGTAACCCAAGTATG  190

seq1  AGGTGTCTGGATCTA-GGAAATGTATGAGCTGTTGAGCAGATGGGTCCAG  238
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGTGTCTGGATCTAGGGAAATGTATGAGCTGTTGAGCAGATGGGTCCAG  240

seq1  TCCAGTGGCTGCTCAGGGATGCTGCATTAAACAGACAATTAGTGGGTGAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGCTGCTCAGGGATGCTGCATTAAACAGACAATTAGTGGGTGAA  290

seq1  AGCAGCAAAGGGAAGGTTGGTGGATCCTTCCTAGCTTAAGTCTTTTATAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAAGGGAAGGTTGGTGGATCCTTCCTAGCTTAAGTCTTTTATAT  340

seq1  GTTATGCTGGGTTTTGGTCATGGGTTGTTGGTTTTTTTTTCTCAATGCCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCTGGGTTTTGGTCATGGGTTGTTGGTTTTTTTTTCTCAATGCCT  390

seq1  TTCTGGATACTATTAACTTTTTGCTTATGTAAAGCAATCACTGGCAGGCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATACTATTAACTTTTTGCTTATGTAAAGCAATCACTGGCAGGCA  440

seq1  TTGTCTCGATGCCCAGTTAAGTTTGAATTTCAGGTCAGGATGCAGGATGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCGATGCCCAGTTAAGTTTGAATTTCAGGTCAGGATGCAGGATGC  490

seq1  ATTAGTGCGCCCCTAATATTACATGGAGTTTGCCTACGTTGAAAAATGTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGCGCCCCTAATATTACATGGAGTTTGCCTACGTTGAAAAATGTA  540

seq1  TTTGCTGTCTGTAGGAAATTCACATTTGACCTACTTCCAAACGTTTGTAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTCTGTAGGAAATTCACATTTGACCTACTTCCAAACGTTTGTAT  590

seq1  GTATTTCTTTTCAAATCTGACAGTCCTGCCGCTTATGTGTAGTTTTGTGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTTTTCAAATCTGACAGTCCTGCCGCTTATGTGTAGTTTTGTGT  640

seq1  CCATGTCTATGCATGTTCAGTGTGTATATGTGCACACATGTGTGTGCAGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTATGCATGTTCAGTGTGTATATGTGCACACATGTGTGTGCAGG  690

seq1  ACTATATGCATATGTGCACCCTTTTGTGTGGAGGCTAGAGTTTGATAGCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATGCATATGTGCACCCTTTTGTGTGGAGGCTAGAGTTTGATAGCT  740

seq1  GGTATCTTCCATGATTCTTCTCCACCTTTTCTCTTTAAGACAGGGTTTCT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTTCCATGATTCTTCTCCACCTTTTCTCTTTAAGACAGGGTTTCT  790

seq1  TGATGAACCCCAATCACCTATTGGTTAGACTGATCAGCCAGTAAACTCAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAACCCCAATCACCTATTGGTTAGACTGATCAGCCAGTAAACTCAG  840

seq1  GGGTTCTGCTTTTCTCTCCCTTTCCCCAGTAATCGATTAGAGATGTGTGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGCTTTTCTCTCCCTTTCCCCAGTAATCGATTAGAGATGTGTGT  890

seq1  GACCATAAACAGCTATCTATGTGAATATCAGCAATATAAACTCAGGTTTT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAAACAGCTATCTATGTGAATATCAGCAATATAAACTCAGGTTTT  940

seq1  CATGTGTTCACAGCAGGCACTTTTCCAACTGAGCCATCTCTCCACTGCAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTCACAGCAGGCACTTTTCCAACTGAGCCATCTCTCCACTGCAA  990

seq1  GCCCACTTAGGTGACAGTGTATGGACTTCACCCCTACCTCCCAGTGTGTC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTTAGGTGACAGTGTATGGACTTCACCCCTACCTCCCAGTGTGTC  1040

seq1  CACAGAGATCCTATGAAGCCACATCTTCTTCAAATCACAATAATAGTGAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGATCCTATGAAGCCACATCTTCTTCAAATCACAATAATAGTGAT  1090

seq1  GCTTATAATCTCCTAAGTCCATATTCATCACATTATATTAAAAGATCTTA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAATCTCCTAAGTCCATATTCATCACATTATATTAAAAGATCTTA  1140

seq1  AGGAATACTAGGAGAGTTACCCTCAGTTAACTGGAATTC  1177
      |||||||||||||||||||||||||||||||||||||||
seq2  AGGAATACTAGGAGAGTTACCCTCAGTTAACTGGAATTC  1179


seq1: chr6_139279251_139279453
seq2: B6Ng01-296G05.g_718_920 (reverse)

seq1  TGATTATGGGATGGATCCCCGGATATGGCAGTCTCTAGATGGTCCATCTT  50
      |||||||||| |||||||| |||||||||||||||||||||||||||| |
seq2  TGATTATGGGGTGGATCCCTGGATATGGCAGTCTCTAGATGGTCCATCCT  50

seq1  TTCGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTT  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCACAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTT  100

seq1  GTTCCCAATTCTAAGAAGGGGCAAAGTGTCCACACTTTGCCCTTCGTTCT  150
      ||||||||||||||||||||||| |||||||||||||||  |||| ||||
seq2  GTTCCCAATTCTAAGAAGGGGCACAGTGTCCACACTTTGGTCTTCATTCT  150

seq1  TCTTGAGTTTCATGTGTTTTGCAAATTGTATCTTATATTTTGGGTATTCT  200
      |||||||||||||| |||| |||||||||||||||||| |||||||| ||
seq2  TCTTGAGTTTCATGCGTTTAGCAAATTGTATCTTATATCTTGGGTATCCT  200

seq1  AAG  203
      |||
seq2  AAG  203


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