BAC Information

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BAC

Clone NameB6Ng01-297B15
Chromosome6 (Build37)
Map Location 17,228,444 - 17,376,128
singlet/doubletdoublet
Overlap geneCav2, Cav1
Upstream geneTcfec, EG435881, Tes, EG232599
Downstream geneMet, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297B15.bB6Ng01-297B15.g
ACCGA092547GA092548
length1,1301,148
definitionB6Ng01-297B15.b B6Ng01-297B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,374,991 - 17,376,128)(17,228,444 - 17,229,587)
sequence
gaattcttcctcgtttccctcttatattttgcttttattttcaaagcttg
gcttcggtcctatctctgtctactttccacttccaatgagtcttgtgaat
aaatttaggacctaccaggataattcagagtattctttacatctcaagac
cttagtttagttgtatcttcaaaatttcttctctatgtgaagggaacatg
caaggttctagagattaggatgtgtcaattcagagaaggaggcacaatgt
agctcatcgtgattattaggtagggttttatttatttaagaaaaattgta
ataaataaaagcccaggagacttacaaggcacagatcaatattacaaaga
atatgaaacggtatggttaatgcatgacattagtacagtaattaagcaca
tagattttttttttcagcttgatgtacttggtttaagtacatgttggttt
aagtatattctggtcttctatgtaacatcgatcaaatcacttatcttttt
gtgacctgtttccttatacgtaaaatagatgtagtcataatagcatatac
cacatgtcctttgtatgagcaggaaatgagttactgtcagttgtatcctt
aaaacataaagcacaagttagaaatatatcataaacaataaaatctattc
tattttagtatgttcatttggtatttattttattagttctatatttttct
ctcattttaatatgtttgtgtttactttaaataataaagggaaacaatgc
aggacaagggatggaatagatgaatcatgtcactcttaattaatttctta
atttctaaatttcaagtatctgacaagtgctggagtttgttgagaaataa
ctcacacatagtggggagagttgtgtagacaacactaatttagttctata
atacagaaaattgaaatgttgaattagttgaagataatgctactttctcc
atgcctactcctccacgggttcacacaactggaggcgaaatccacacgta
ataaagtcatataacaatggtgctgccttggatcagtttcagaggagtca
gagtcatagctagagtatgtgcattgtcataagtgaaagttctctcagga
agcctgtggagtctgtggaggaaagctgtt
gaattccatggttctcggactcagaaaaggcagggaaaggtgacttgggt
cctcaggggacatttggcaatgtctggaaacatttggtgttgtcatgact
gggcagtattatctgcagctagtgaggcagaagccagggatgttgctaaa
tgtacagttcttgggataagccctcaaagcacagggtgatctggctgaaa
atgccaataatttggaagttgagcaagcctcctttaacccaagtgcttta
aatatcaagaaattatttccatgaataaccagttccatgaataaccaagg
agtagagctgtatgtgaacaatatgggacactagaagatgtgtttgtgat
ttgagaagaaaactaaagagaaaaactgattttattcatatgtgtatcca
taaacacattacaataagccaaaaaagatctttgttacagtgtaatgaga
aaatgaaggaacgaaatcctactcacaaatactaatttatgatcaagttg
tactccaccataattttaatatgacacctaaaactcttattagaaggcaa
gatacatgataatagctagaaaaagacagcaccagcattgattttatatg
aaatttaacgtctccttccttataattgaattgcttttgaggctcattgg
aggataatcccgcacactggaagttctagtgtggactcggccatttggct
gcaacatcttctttaatttttctctttcttagaaaatctatcagtttagc
atgaataagaccatctttgctgtgtagaatcatgctgttttaatcccctt
caaaataatggtagctgccatagtataagaatattctaagaagataaaca
aaatcattttatagaaaggcttaaaaaaaaaacttgaattaaaatagtga
accgggcaagcatgttattaaaaaataagagtgtcatcaagtcccaaccc
atggtagagggatatattcagtaagtcagtatgtgagtctttctctatga
attcttcatggcaatacgccaactctagtcaggttctattttttatcatg
ggcttcagaagaacaaccttttataaatacctatattttaacaatgaaat
tctttactgtactgccaataaagacactggccagttaccctctccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_17374991_17376128
seq2: B6Ng01-297B15.b_48_1177 (reverse)

seq1  AACAGCTTTCCTCAACAGACTCCACAGGGCTCTCCTGAAGAGCACTTTTC  50
      ||||||||||||| |||||||||||| |||| ||||| |||| || ||||
seq2  AACAGCTTTCCTCCACAGACTCCACA-GGCT-TCCTG-AGAGAAC-TTTC  46

seq1  ACTTTATGAC-ATGCACCATACTCCTAGCTATGGACTCTG-CTCCTCTGG  98
      || ||||||| ||||| |||||| |||||||| ||||||| |||||||| 
seq2  AC-TTATGACAATGCA-CATACT-CTAGCTAT-GACTCTGACTCCTCTGA  92

seq1  AACTTGATCCAAGGCAGCACCATTGTTATATGACTTTTATTACGTGTGGA  148
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAC-TGATCCAAGGCAGCACCATTGTTATATGAC-TTTATTACGTGTGGA  140

seq1  TTTCGCCTCCAGTTGTGTGAACCCGTGGAGGAGTAGGCATGGAG-AAGTA  197
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTCGCCTCCAGTTGTGTGAACCCGTGGAGGAGTAGGCATGGAGAAAGTA  190

seq1  GCATTATCTTCAACTAATTCAACATTTTCAATTTTCTGTATTATAGAACT  247
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCATTATCTTCAACTAATTCAACA-TTTCAATTTTCTGTATTATAGAACT  239

seq1  AAATTAGTGTTGTCTACACAACTCTCCCCACTATGTGTGAGTTATTTCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTGTTGTCTACACAACTCTCCCCACTATGTGTGAGTTATTTCTC  289

seq1  AACAAACTCCAGCACTTGTCAGATACTTGAAATTTAGAAATTAAGAAATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTCCAGCACTTGTCAGATACTTGAAATTTAGAAATTAAGAAATT  339

seq1  AATTAAGAGTGACATGATTCATCTATTCCATCCCTTGTCCTGCATTGTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAGTGACATGATTCATCTATTCCATCCCTTGTCCTGCATTGTTT  389

seq1  CCCTTTATTATTTAAAGTAAACACAAACATATTAAAATGAGAGAAAAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATTATTTAAAGTAAACACAAACATATTAAAATGAGAGAAAAATA  439

seq1  TAGAACTAATAAAATAAATACCAAATGAACATACTAAAATAGAATAGATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTAATAAAATAAATACCAAATGAACATACTAAAATAGAATAGATT  489

seq1  TTATTGTTTATGATATATTTCTAACTTGTGCTTTATGTTTTAAGGATACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTTATGATATATTTCTAACTTGTGCTTTATGTTTTAAGGATACA  539

seq1  ACTGACAGTAACTCATTTCCTGCTCATACAAAGGACATGTGGTATATGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGTAACTCATTTCCTGCTCATACAAAGGACATGTGGTATATGCT  589

seq1  ATTATGACTACATCTATTTTACGTATAAGGAAACAGGTCACAAAAAGATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGACTACATCTATTTTACGTATAAGGAAACAGGTCACAAAAAGATA  639

seq1  AGTGATTTGATCGATGTTACATAGAAGACCAGAATATACTTAAACCAACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTGATCGATGTTACATAGAAGACCAGAATATACTTAAACCAACA  689

seq1  TGTACTTAAACCAAGTACATCAAGCTGAAAAAAAAAATCTATGTGCTTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTAAACCAAGTACATCAAGCTGAAAAAAAAAATCTATGTGCTTAA  739

seq1  TTACTGTACTAATGTCATGCATTAACCATACCGTTTCATATTCTTTGTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTACTAATGTCATGCATTAACCATACCGTTTCATATTCTTTGTAA  789

seq1  TATTGATCTGTGCCTTGTAAGTCTCCTGGGCTTTTATTTATTACAATTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATCTGTGCCTTGTAAGTCTCCTGGGCTTTTATTTATTACAATTTT  839

seq1  TCTTAAATAAATAAAACCCTACCTAATAATCACGATGAGCTACATTGTGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATAAATAAAACCCTACCTAATAATCACGATGAGCTACATTGTGC  889

seq1  CTCCTTCTCTGAATTGACACATCCTAATCTCTAGAACCTTGCATGTTCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTCTGAATTGACACATCCTAATCTCTAGAACCTTGCATGTTCCC  939

seq1  TTCACATAGAGAAGAAATTTTGAAGATACAACTAAACTAAGGTCTTGAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATAGAGAAGAAATTTTGAAGATACAACTAAACTAAGGTCTTGAGA  989

seq1  TGTAAAGAATACTCTGAATTATCCTGGTAGGTCCTAAATTTATTCACAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGAATACTCTGAATTATCCTGGTAGGTCCTAAATTTATTCACAAG  1039

seq1  ACTCATTGGAAGTGGAAAGTAGACAGAGATAGGACCGAAGCCAAGCTTTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTGGAAGTGGAAAGTAGACAGAGATAGGACCGAAGCCAAGCTTTG  1089

seq1  AAAATAAAAGCAAAATATAAGAGGGAAACGAGGAAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAGCAAAATATAAGAGGGAAACGAGGAAGAATTC  1130

seq1: chr6_17228444_17229587
seq2: B6Ng01-297B15.g_66_1213

seq1  GAATTCCATGGTTCTCGGACTCAGAAAAGGCAGGGAAAGGTGACTTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTTCTCGGACTCAGAAAAGGCAGGGAAAGGTGACTTGGGT  50

seq1  CCTCAGGGGACATTTGGCAATGTCTGGAAACATTTGGTGTTGTCATGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGGACATTTGGCAATGTCTGGAAACATTTGGTGTTGTCATGACT  100

seq1  GGGCAGTATTATCTGCAGCTAGTGAGGCAGAAGCCAGGGATGTTGCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTATTATCTGCAGCTAGTGAGGCAGAAGCCAGGGATGTTGCTAAA  150

seq1  TGTACAGTTCTTGGGATAAGCCCTCAAAGCACAGGGTGATCTGGCTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTTCTTGGGATAAGCCCTCAAAGCACAGGGTGATCTGGCTGAAA  200

seq1  ATGCCAATAATTTGGAAGTTGAGCAAGCCTCCTTTAACCCAAGTGCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATAATTTGGAAGTTGAGCAAGCCTCCTTTAACCCAAGTGCTTTA  250

seq1  AATATCAAGAAATTATTTCCATGAATAACCAGTTCCATGAATAACCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAAGAAATTATTTCCATGAATAACCAGTTCCATGAATAACCAAGG  300

seq1  AGTAGAGCTGTATGTGAACAATATGGGACACTAGAAGATGTGTTTGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGCTGTATGTGAACAATATGGGACACTAGAAGATGTGTTTGTGAT  350

seq1  TTGAGAAGAAAACTAAAGAGAAAAACTGATTTTATTCATATGTGTATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAGAAAACTAAAGAGAAAAACTGATTTTATTCATATGTGTATCCA  400

seq1  TAAACACATTACAATAAGCCAAAAAAGATCTTTGTTACAGTGTAATGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACATTACAATAAGCCAAAAAAGATCTTTGTTACAGTGTAATGAGA  450

seq1  AAATGAAGGAACGAAATCCTACTCACAAATACTAATTTATGATCAAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGGAACGAAATCCTACTCACAAATACTAATTTATGATCAAGTTG  500

seq1  TACTCCACCATAATTTTAATATGACACCTAAAACTCTTATTAGAAGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCACCATAATTTTAATATGACACCTAAAACTCTTATTAGAAGGCAA  550

seq1  GATACATGATAATAGCTAGAAAAAGACAGCACCAGCATTGATTTTATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATGATAATAGCTAGAAAAAGACAGCACCAGCATTGATTTTATATG  600

seq1  AAATTTAACGTCTCCTTCCTTATAATTGAATTGCTTTTGAGGCTCATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAACGTCTCCTTCCTTATAATTGAATTGCTTTTGAGGCTCATTGG  650

seq1  AGGATAATCCCGCACACTGGAAGTTCTAGTGTGGACTCGGCCATTTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATCCCGCACACTGGAAGTTCTAGTGTGGACTCGGCCATTTGGCT  700

seq1  GCAACATCTTCTTTAATTTTTCTCTTTCTTAGAAAATCTATCAGTTTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCTTCTTTAATTTTTCTCTTTCTTAGAAAATCTATCAGTTTAGC  750

seq1  ATGAATAAGACCATCTTTGCTGTGTAGAATCATGCTGTTTTAATCCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAGACCATCTTTGCTGTGTAGAATCATGCTGTTTTAATCCCCTT  800

seq1  CAAAATAATGGTAGCTGCCATAGTATAAGAATATTCTAAGAAGATAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATGGTAGCTGCCATAGTATAAGAATATTCTAAGAAGATAAACA  850

seq1  AAATCATTTTATAGAAAGGCTT-AAAAAAAAACTTGAATTAAAATAGTGA  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATCATTTTATAGAAAGGCTTAAAAAAAAAACTTGAATTAAAATAGTGA  900

seq1  ACCGGGCAAGCATGTTATT-AAAAATAAGAGTGTCATCAAGTCCCAACCC  948
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCGGGCAAGCATGTTATTAAAAAATAAGAGTGTCATCAAGTCCCAACCC  950

seq1  ATGGTAGAGGGATATATTCAGTAAGTCAGTATGTGAGTCTTTCTCTATTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGGTAGAGGGATATATTCAGTAAGTCAGTATGTGAGTCTTTCTCTA-TG  999

seq1  AATTCTTCATGGC-ATACGCCAACTCTAGTCAGGTTCTA-TTTTTATCAT  1046
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  AATTCTTCATGGCAATACGCCAACTCTAGTCAGGTTCTATTTTTTATCAT  1049

seq1  GGGCTTCAGA--GACAA-CTTTTATAAATACCTATAATTTTACAAATGAA  1093
      ||||||||||   |||| ||||||||||||||||| ||||||  ||||||
seq2  GGGCTTCAGAAGAACAACCTTTTATAAATACCTAT-ATTTTAACAATGAA  1098

seq1  --TCTTTAACTGTAACTGCCCAATAAAAGACA-TGGCAGTTTTACCTCTC  1140
        ||||| ||||| |||| ||||| ||||||| ||||   ||  ||||||
seq2  ATTCTTT-ACTGT-ACTG-CCAAT-AAAGACACTGGCCAGTTACCCTCTC  1144

seq1  CATG  1144
      ||||
seq2  CATG  1148