BAC Information

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BAC

Clone NameB6Ng01-297G09
Chromosome6 (Build37)
Map Location 87,280,151 - 87,389,555
singlet/doubletdoublet
Overlap geneAntxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10
Upstream geneLOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e
Downstream geneArhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297G09.bB6Ng01-297G09.g
ACCGA092764GA092765
length1,1511,129
definitionB6Ng01-297G09.b B6Ng01-297G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,388,408 - 87,389,555)(87,280,151 - 87,281,270)
sequence
gaattcaaagccaagtcataagatcagcttccctagccctttcagtccag
gtctagcccaagctctcaaggagcgctctgctccctcccctccaggactg
agggcaagggcttcctgtcacacatgccagatgccaggatgctgaagtcc
actcaagagaggcagaagaaggtctcacgggaggcgctgtcttctcccat
cgctgtctccttgcccttccagcactgcttctgccatgggaatgctcttc
cttccctgcccatgctgccatgggaatgctctcccttccagaactcccac
cgaccttccccatgctcccatgcacaggagggaggctcataccttacacg
gtcagatactcttatttcctggggctggaacgaagatcctttgtgctttc
ccaatgactttcacacacaatgactcaaactattggttaaactgagcaca
gaacagcatcagcgtcccctaagaagtcaggacactccttataactaatg
tttgcagagaagttggatgtatttgggtgtctatcaagagatcagaacag
accagctggctggaaggacccccccccctttcaaacctgaggtcgtatga
agttcagtaataagagatcaatcaaatttaacctccacagcttctgaatt
catggcaggattcaaagaagtatttctccagttattagcaaggaggagcc
aatttggtttccttttgtgttgctagtgttcttggagtgttcaggatcac
acacaaatgagaagactgtaaaaaggcagaagctcactgcagcctgctct
ctcttcaaatcattttctaccaattaagcaagcagttgtatcccatctgg
atacacagatgtggaaatattccaagggggtagaatagagggaaagactg
catctaaaaaataaactgctgaagattactgtcaaaataattttccattt
tatttaacaggatgactctacgtacacgtttgtttgatgacaaagtataa
aatatctatttccatatcattttagtctaactttaagtaatctggtcatg
aatcggtgacttgctttaccaaagaaacgtggacgctttagctgaatcaa
gcgggttccaagataatcagcctaattcctgggtgcccgggaggctgctg
g
gaattcactggatctcactggctgcacctggaacccactggatctcactg
gctgcacctggaacccactggatctcactggctgcactgttgtgtgcttc
ctattacagcccaatggtgctgggtagagatgagcagaagggaccaggct
gggagtcgcgagcaggaaagtcctgctctgttgctctgccaggatctagt
tgtgattctgggcagttctaactcagggggatagtgaacaaaacttccta
ccatctacagactagggatcaacctgtctaccactccagacagtgctcct
ctgtcccttgtgaaagcatgtgggtctgagaagctcactgaacttcatac
tctcaaaatttcctgtgtaagttagctgttagaaatccaggtctcttcca
ggaaaacaatgctctacctagtgaagttccagtgtaggatgacaagcatc
actctgcatccattactcatgtgtccatgtccctggggtgccacactccc
tcacagccctgcagatgagtaccaccttggaatgcccaatggacgcttga
gaaagcgagcttcctttgtttgggggaaaagagatagagacactggctga
acaaaaagtaagtcttgccctgtagcccccacccttcaccccgtggtctc
tctcagtgttctgctgttgaagtcttcatggcacatgtatcatggccagc
acttccctgagaccggagttggaaaattctccatctccttctatataaag
aaaattaatacgtggcatgaaaaggaccctgccaggaaagaacagtgtat
ccatgtccatggtgggtcctggagattcacagtagactcaagagagactc
cgctgttcttctctagatggggccttccaaggctgactttttcaatccct
gattgaattcccagcaaactactcttcccaacttcttaccagaaaagcat
gtttatataaacatgaaattccatcagtgtagaagccctggtgcggccca
gttgccagaagctcttaataaccgcccttatgtgttacttgtgggcgttc
taggttatcattatacggtctttgcctcctgggatggaaaacatgacgtt
tccattaactatataatctggcctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87388408_87389555
seq2: B6Ng01-297G09.b_46_1196 (reverse)

seq1  CCAGCAGCCTCCGGGGCACCCAGGAAATTAGCTG---ATACTGGGACACG  47
      |||||||||||| ||||||||||||| |  ||||   ||  ||| || ||
seq2  CCAGCAGCCTCCCGGGCACCCAGGAATTAGGCTGATTATCTTGGAACCCG  50

seq1  C-TGATTCAGCT-AAGCGGTCACG-TTCTTTGGTAAAGCAAGTTCACGAT  94
      | |||||||||| |||||  |||| ||||||||||||||||||   ||||
seq2  CTTGATTCAGCTAAAGCGTCCACGTTTCTTTGGTAAAGCAAGTCACCGAT  100

seq1  TCATGACCAGATTACTAAAAGTTAGACTAAAATGAATATGGAAATAGATA  144
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  TCATGACCAGATTACTTAAAGTTAGACTAAAATG-ATATGGAAATAGATA  149

seq1  TTTTATACTTTGTTCATCAAACAAACGTGTACCGTAGAGTCATCCTGTTA  194
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  TTTTATACTTTG-TCATCAAACAAACGTGTA-CGTAGAGTCATCCTGTTA  197

seq1  AATAAAATGGAAAATTATTTTGACAGTAATCTTCAGCAGTTTATTTTTTA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGGAAAATTATTTTGACAGTAATCTTCAGCAGTTTATTTTTTA  247

seq1  GATGCAGTCTTTCCCTCTATTCTACCCCCTTGGAATATTTCCACATCTGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGTCTTTCCCTCTATTCTACCCCCTTGGAATATTTCCACATCTGT  297

seq1  GTATCCAGATGGAATACAACTGCTTGCTTAATTGGTAGAAAATGATTTGA  344
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTATCCAGATGGGATACAACTGCTTGCTTAATTGGTAGAAAATGATTTGA  347

seq1  AGAGAGAGCAGGCTGCAGTGAGCTTCTGCCTTTTTACAGTCTTCTCATTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGCAGGCTGCAGTGAGCTTCTGCCTTTTTACAGTCTTCTCATTT  397

seq1  GTGTGTGATCCTGAACACTCCAAGAACACTAGCAACACAAAAGGAAACCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGATCCTGAACACTCCAAGAACACTAGCAACACAAAAGGAAACCA  447

seq1  AATTGGCTCCTCCTTGCTAATAACTGGAGAAATACTTCTTTGAATCCTGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCTCCTCCTTGCTAATAACTGGAGAAATACTTCTTTGAATCCTGC  497

seq1  CATGAATTCAGAAGCTGTGGAGGTTAAATTTGATTGATCTCTTATTACTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTCAGAAGCTGTGGAGGTTAAATTTGATTGATCTCTTATTACTG  547

seq1  AACTTCATACGACCTCAGGTTTGAAAGGGGGGGGGGTCCTTCCAGCCAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATACGACCTCAGGTTTGAAAGGGGGGGGGGTCCTTCCAGCCAGC  597

seq1  TGGTCTGTTCTGATCTCTTGATAGACACCCAAATACATCCAACTTCTCTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTTCTGATCTCTTGATAGACACCCAAATACATCCAACTTCTCTG  647

seq1  CAAACATTAGTTATAAGGAGTGTCCTGACTTCTTAGGGGACGCTGATGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTAGTTATAAGGAGTGTCCTGACTTCTTAGGGGACGCTGATGCT  697

seq1  GTTCTGTGCTCAGTTTAACCAATAGTTTGAGTCATTGTGTGTGAAAGTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGCTCAGTTTAACCAATAGTTTGAGTCATTGTGTGTGAAAGTCA  747

seq1  TTGGGAAAGCACAAAGGATCTTCGTTCCAGCCCCAGGAAATAAGAGTATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAGCACAAAGGATCTTCGTTCCAGCCCCAGGAAATAAGAGTATC  797

seq1  TGACCGTGTAAGGTATGAGCCTCCCTCCTGTGCATGGGAGCATGGGGAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGTGTAAGGTATGAGCCTCCCTCCTGTGCATGGGAGCATGGGGAAG  847

seq1  GTCGGTGGGAGTTCTGGAAGGGAGAGCATTCCCATGGCAGCATGGGCAGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTGGGAGTTCTGGAAGGGAGAGCATTCCCATGGCAGCATGGGCAGG  897

seq1  GAAGGAAGAGCATTCCCATGGCAGAAGCAGTGCTGGAAGGGCAAGGAGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAGCATTCCCATGGCAGAAGCAGTGCTGGAAGGGCAAGGAGAC  947

seq1  AGCGATGGGAGAAGACAGCGCCTCCCGTGAGACCTTCTTCTGCCTCTCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATGGGAGAAGACAGCGCCTCCCGTGAGACCTTCTTCTGCCTCTCTT  997

seq1  GAGTGGACTTCAGCATCCTGGCATCTGGCATGTGTGACAGGAAGCCCTTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGACTTCAGCATCCTGGCATCTGGCATGTGTGACAGGAAGCCCTTG  1047

seq1  CCCTCAGTCCTGGAGGGGAGGGAGCAGAGCGCTCCTTGAGAGCTTGGGCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTCCTGGAGGGGAGGGAGCAGAGCGCTCCTTGAGAGCTTGGGCT  1097

seq1  AGACCTGGACTGAAAGGGCTAGGGAAGCTGATCTTATGACTTGGCTTTGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGGACTGAAAGGGCTAGGGAAGCTGATCTTATGACTTGGCTTTGA  1147

seq1  ATTC  1148
      ||||
seq2  ATTC  1151

seq1: chr6_87280151_87281270
seq2: B6Ng01-297G09.g_69_1197

seq1  GAATTCACTGGATCTCACTGGCTGCACCTGGAACCCACTGGATCTCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGATCTCACTGGCTGCACCTGGAACCCACTGGATCTCACTG  50

seq1  GCTGCACCTGGAACCCACTGGATCTCACTGGCTGCACTGTTGTGTGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCTGGAACCCACTGGATCTCACTGGCTGCACTGTTGTGTGCTTC  100

seq1  CTATTACAGCCCAATGGTGCTGGGTAGAGATGAGCAGAAGGGACCAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACAGCCCAATGGTGCTGGGTAGAGATGAGCAGAAGGGACCAGGCT  150

seq1  GGGAGTCGCGAGCAGGAAAGTCCTGCTCTGTTGCTCTGCCAGGATCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCGCGAGCAGGAAAGTCCTGCTCTGTTGCTCTGCCAGGATCTAGT  200

seq1  TGTGATTCTGGGCAGTTCTAACTCAGGGGGATAGTGAACAAAACTTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCTGGGCAGTTCTAACTCAGGGGGATAGTGAACAAAACTTCCTA  250

seq1  CCATCTACAGACTAGGGATCAACCTGTCTACCACTCCAGACAGTGCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTACAGACTAGGGATCAACCTGTCTACCACTCCAGACAGTGCTCCT  300

seq1  CTGTCCCTTGTGAAAGCATGTGGGTCTGAGAAGCTCACTGAACTTCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTTGTGAAAGCATGTGGGTCTGAGAAGCTCACTGAACTTCATAC  350

seq1  TCTCAAAATTTCCTGTGTAAGTTAGCTGTTAGAAATCCAGGTCTCTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAATTTCCTGTGTAAGTTAGCTGTTAGAAATCCAGGTCTCTTCCA  400

seq1  GGAAAACAATGCTCTACCTAGTGAAGTTCCAGTGTAGGATGACAAGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAATGCTCTACCTAGTGAAGTTCCAGTGTAGGATGACAAGCATC  450

seq1  ACTCTGCATCCATTACTCATGTGTCCATGTCCCTGGGGTGCCACACTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCATCCATTACTCATGTGTCCATGTCCCTGGGGTGCCACACTCCC  500

seq1  TCACAGCCCTGCAGATGAGTACCACCTTGGAATGCCCAATGGACGCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCCTGCAGATGAGTACCACCTTGGAATGCCCAATGGACGCTTGA  550

seq1  GAAAGCGAGCTTCCTTTGTTTGGGGGAAAAGAGATAGAGACACTGGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCGAGCTTCCTTTGTTTGGGGGAAAAGAGATAGAGACACTGGCTGA  600

seq1  ACAAAAAGTAAGTCTTGCCCTGTAGCCCCCACCCTTCACCCCGTGGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGTAAGTCTTGCCCTGTAGCCCCCACCCTTCACCCCGTGGTCTC  650

seq1  TCTCAGTGTTCTGCTGTTGAAGTCTTCATGGCACATGTATCATGGCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGTTCTGCTGTTGAAGTCTTCATGGCACATGTATCATGGCCAGC  700

seq1  ACTTCCCTGAGACCGGAGTTGGAAAATTCTCCATCTCCTTCTATATAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTGAGACCGGAGTTGGAAAATTCTCCATCTCCTTCTATATAAAG  750

seq1  AAAATTAATACGTGGCATGAAAAGGACCCTGCCAGGAAAGAACAGTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATACGTGGCATGAAAAGGACCCTGCCAGGAAAGAACAGTGTAT  800

seq1  CCATGTCCATGGTGGGTCCTGGAGATTCACAGTAGACTCAAGAGAGACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCATGGTGGGTCCTGGAGATTCACAGTAGACTCAAGAGAGACTC  850

seq1  CGCTGTTCTTCTCTAGATGGGGCCTTCCAAGGCTGACTTTTCAAATCCCT  900
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  CGCTGTTCTTCTCTAGATGGGGCCTTCCAAGGCTGACTTTTTCAATCCCT  900

seq1  GATTGAATTCCCAGCAAACTACTCTTCCCAAC-TCTAACCAGAAAAGCAT  949
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  GATTGAATTCCCAGCAAACTACTCTTCCCAACTTCTTACCAGAAAAGCAT  950

seq1  GTTTATATAAACATGAAATTCCATCAGTGTAG-AGCCCT-GTGCGGCCCA  997
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  GTTTATATAAACATGAAATTCCATCAGTGTAGAAGCCCTGGTGCGGCCCA  1000

seq1  GTTGCCAG-AGCTCTTAATAA-CGCCCTATTGTGTTAC-TGT-GGCGTTC  1043
      |||||||| |||||||||||| ||||||  |||||||| ||| |||||||
seq2  GTTGCCAGAAGCTCTTAATAACCGCCCTTATGTGTTACTTGTGGGCGTTC  1050

seq1  TAGGTTATCATTATACGGTCTTTG-CTCCTGGTTGAGAAAACATGACG-T  1091
      |||||||||||||||||||||||| |||||||    |||||||||||| |
seq2  TAGGTTATCATTATACGGTCTTTGCCTCCTGGGATGGAAAACATGACGTT  1100

seq1  TCCATTAACTATATAATCTGGGCTCTCTC  1120
      ||||||||||||||||||||| |||||||
seq2  TCCATTAACTATATAATCTGGCCTCTCTC  1129