BAC Information

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BAC

Clone NameB6Ng01-298P01
Chromosome6 (Build37)
Map Location 58,644,381 - 58,747,440
singlet/doubletdoublet
Overlap genenone
Upstream geneLancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2
Downstream geneHerc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3, EG634166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298P01.bB6Ng01-298P01.g
ACCGA093916GA093917
length1,0951,099
definitionB6Ng01-298P01.b B6Ng01-298P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,644,381 - 58,645,480)(58,746,333 - 58,747,440)
sequence
gaattctcctttagagttcatgaccttaccaacagcaggtagctgactag
gattatagtaccagctatgaatttcctcctatttaagtgggccttaaatt
actctcttggcaatactttgagatacaataaaagtcagtcctcacgcaca
aggcttccaggttagctccatctggatttccctaagtcctgggtccaaag
tgcatgctgtcttcagcagtagggtcttagatttaaatctcagaacattt
tttaaagttaactcttttaaacgtgttagtctctcaaatatattaagtgc
ctagtcatggttaattcctgttggccaatggaattaaaaacaaagtacaa
cattcagagtcaccatgttaaaggaataacacatgtattattttggaatg
taaaaatcgttatttctgctttactacacagaaagttgaaattatatatc
catcagaaaatataattgaaactagaaaaaaatagattttgcctttgtgt
gtccttttacctgtattctattctttcacattgcataatattaccctctc
ttgatcccttaaatcttttagactttgcccacacttacacttgtttatat
acatgaatacattaaaggccagagtccacatctgaggaagaacatttttc
tttctgagtttagatcaccttgcttaatactattctttctggatccataa
atattcttgctaatttcattttctttatacctgaataatattttatatat
atacatatatatatatgtatatatatatatatataccacaatttcatcat
ctattcattcatttgtgaataaacatctagactggcttaatttccttgcc
atcataaatagggcaacaataaatacggatgtaccaatggagttcttttg
ttatatgcacaagaatggtatagctatgtcatatggtagttctatttgta
atattgtgaaaaacttccaaactaatttgtataatggctgggttaatttt
cactccccaccacagtgatgaggatgttcttccccacatgtatcagtatc
tatggtctgatctattctgtataagggttgatctatctcgtgagt
gaattcaagagtatttcctatttttctcttttatctgctcttacattgag
gactttaatctatctcaagttgagtttttctacagagtgatagaatcgga
tctattttaattcttctacatacagctattcagtttgactagcagtattt
gttgaatatgctttcttttctccagtgtggtttttttttttttaacttct
tcattaaacattagtttacgaaaaaaaaaatcagtttacggtatctatgt
ggcactgtgtctgagtctttaatggattggatccactggcttctagagga
gacatattgtcttggttatttatgttcctgatttcattctgggatatacg
tatctggaacgatggcctttgaagtgattgttgatgtgaatattttgttt
cacctttgttaggtgagtgttctgtcctttggttgttgtccactttgttt
cctatccaagtctggaggctgctgcatctctagttaagagcagttttatg
gttctatgagaaatcatacaggtttaaagatgggtaagagtactgcctca
aagaggtgacagagtagaactagcgggaccctagaccctggatccacacc
tagaagccgagtacaaagggaaggatatggaatcagaggaggggctaggg
taggtaggaggcaacaggcttaagagtaaatttgaagagacctgaataga
ggatataaaggaaggtaaatgtcatctacatgaaagtcagccaagtgtct
ggaataaataccttttaaagctatcttggggccctgaaaagtcgataatg
tcaatgattgataagagttaagttttggcgttgtcccacatctagccctt
tggaattaagtgacatgactctgttctttgtttaaatggcattattctgt
atattctccctgctacagaacttcttttgggaggatgaaacagtgctact
atatacgcaaacaaaacatcaacaaataaaacaagagctaatgatgctct
ggtctctgctgtgggagaatgccactatagtcagagccctgactacgttt
tggttctccattctctcaattatggcatatgggaatagacttcatctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_58644381_58645480
seq2: B6Ng01-298P01.b_44_1138

seq1  GAATTCTCCTTTAGAGTTCATGACCTTACCAACAGCAGGTAGCTGACTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTAGAGTTCATGACCTTACCAACAGCAGGTAGCTGACTAG  50

seq1  GATTATAGTACCAGCTATGAATTTCCTCCTATTTAAGTGGGCCTTAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAGTACCAGCTATGAATTTCCTCCTATTTAAGTGGGCCTTAAATT  100

seq1  ACTCTCTTGGCAATACTTTGAGATACAATAAAAGTCAGTCCTCACGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTTGGCAATACTTTGAGATACAATAAAAGTCAGTCCTCACGCACA  150

seq1  AGGCTTCCAGGTTAGCTCCATCTGGATTTCCCTAAGTCCTGGGTCCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCCAGGTTAGCTCCATCTGGATTTCCCTAAGTCCTGGGTCCAAAG  200

seq1  TGCATGCTGTCTTCAGCAGTAGGGTCTTAGATTTAAATCTCAGAACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTGTCTTCAGCAGTAGGGTCTTAGATTTAAATCTCAGAACATTT  250

seq1  TTTAAAGTTAACTCTTTTAAACGTGTTAGTCTCTCAAATATATTAAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTTAACTCTTTTAAACGTGTTAGTCTCTCAAATATATTAAGTGC  300

seq1  CTAGTCATGGTTAATTCCTGTTGGCCAATGGAATTAAAAACAAAGTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCATGGTTAATTCCTGTTGGCCAATGGAATTAAAAACAAAGTACAA  350

seq1  CATTCAGAGTCACCATGTTAAAGGAATAACACATGTATTATTTTGGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGAGTCACCATGTTAAAGGAATAACACATGTATTATTTTGGAATG  400

seq1  TAAAAATCGTTATTTCTGCTTTACTACACAGAAAGTTGAAATTATATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCGTTATTTCTGCTTTACTACACAGAAAGTTGAAATTATATATC  450

seq1  CATCAGAAAATATAATTGAAACTAGAAAAAAATAGATTTTGCCTTTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAAAATATAATTGAAACTAGAAAAAAATAGATTTTGCCTTTGTGT  500

seq1  GTCCTTTTACCTGTATTCTATTCTTTCACATTGCATAATATTACCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTACCTGTATTCTATTCTTTCACATTGCATAATATTACCCTCTC  550

seq1  TTGATCCCTTAAATCTTTTAGACTTTGCCCACACTTACACTTGTTTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCTTAAATCTTTTAGACTTTGCCCACACTTACACTTGTTTATAT  600

seq1  ACATGAATACATTAAAGGCCAGAGTCCACATCTGAGGAAGAACATTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATACATTAAAGGCCAGAGTCCACATCTGAGGAAGAACATTTTTC  650

seq1  TTTCTGAGTTTAGATCACCTTGCTTAATACTATTCTTTCTGGATCCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTTAGATCACCTTGCTTAATACTATTCTTTCTGGATCCATAA  700

seq1  ATATTCTTGCTAATTTCATTTTCTTTATACCTGAATAATATTTTATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTGCTAATTTCATTTTCTTTATACCTGAATAATATTTTATATAT  750

seq1  ATACATATATATATATGTATATATATATATATATACCACAATTTCATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATATATATATGTATATATATATATATATACCACAATTTCATCAT  800

seq1  CTATTCATTCATTTGTGAATAAACATCTAGACTGGCTTAATTTCCTTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATTCATTTGTGAATAAACATCTAGACTGGCTTAATTTCCTTGCC  850

seq1  ATCATAAATAGGGCAACAATAAATACGGATGTACCAATGGAGTTCTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAATAGGGCAACAATAAATACGGATGTACCAATGGAGTTCTTTTG  900

seq1  TTATATGCACAAGAATGGTATAGCTATGTCATATGGTAGTTCTATTTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCACAAGAATGGTATAGCTATGTCATATGGTAGTTCTATTTGTA  950

seq1  ATATTGTGAAAAACTTCCAAACTAATTTGTATAATGGCTGGGTTAATTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGAAAAACTTCCAAACTAATTTGTATAATGGCTGGGTTAATTTT  1000

seq1  CACTCCCACCAACAGTGAATGAGGGTTGTTCTTTCCCCACATGTATTCCA  1050
      |||||||  | |||||| |||| || ||||| ||||||||||||||  ||
seq2  CACTCCCCACCACAGTG-ATGA-GGATGTTC-TTCCCCACATGTAT--CA  1045

seq1  GTATCTATTGTCTGATCTATTCTGTAT-AGGGTGAATGGTATCTCGTGAG  1099
      |||||||| |||||||||||||||||| |||||  ||  |||||||||||
seq2  GTATCTATGGTCTGATCTATTCTGTATAAGGGTTGAT-CTATCTCGTGAG  1094

seq1  T  1100
      |
seq2  T  1095

seq1: chr6_58746333_58747440
seq2: B6Ng01-298P01.g_67_1165 (reverse)

seq1  TAAGATGAGTTCTAATACAATATGCCATAATTGAAGAAATGGAGAACCAA  50
      ||||||||  |||| | | |||||||||||||||   |||||||||||||
seq2  TAAGATGAAGTCTATTCCCATATGCCATAATTGAGAGAATGGAGAACCAA  50

seq1  AAAGGTTAGTCAGGGCTCTGACTTATTAAGTGGCATTCTCACACAGCCAG  100
      || |  |||||||||||||||| |||  |||||||||||| ||||| |||
seq2  AACG--TAGTCAGGGCTCTGAC-TAT--AGTGGCATTCTCCCACAG-CAG  94

seq1  AGACCAGAGGCAATCATTAGCCTCTTGTTTTTATTTTGTTGATTGTTTTT  150
      |||||||||   |||||||| ||||||||||   |||||||||   ||||
seq2  AGACCAGAG--CATCATTAG-CTCTTGTTTT--ATTTGTTGAT--GTTTT  137

seq1  GTTTGCGTATATAGTAGCACTGTTTCATCCTCC--AAAGAAGTTCTGTAG  198
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  GTTTGCGTATATAGTAGCACTGTTTCATCCTCCCAAAAGAAGTTCTGTAG  187

seq1  CAGGGAGAATATACAGAATAATGCCATTTAAACAAAGAACAGAGTCATGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAATATACAGAATAATGCCATTTAAACAAAGAACAGAGTCATGT  237

seq1  CACTTAATTCCAAAGGGCTAGATGT-GGACAACGCCAAAACTTAACTCTT  297
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACTTAATTCCAAAGGGCTAGATGTGGGACAACGCCAAAACTTAACTCTT  287

seq1  ATCAATCATTGACATTATCGACTTTTCAGGG-CCCAAGATAGCTTTAAAA  346
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCAATCATTGACATTATCGACTTTTCAGGGCCCCAAGATAGCTTTAAAA  337

seq1  GGTATTTATTCCAGACACTTGGCTGACTTTCATGTAGATGACATTTACCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTATTCCAGACACTTGGCTGACTTTCATGTAGATGACATTTACCT  387

seq1  TCCTTTATATCCTCTATTCAGGTCTCTTCAAATTTACTCTTAAGCCTGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATATCCTCTATTCAGGTCTCTTCAAATTTACTCTTAAGCCTGTT  437

seq1  GCCTCCTACCTACCCTAGCCCCTCCTCTGATTCCATATCCTTCCCTTTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTACCTACCCTAGCCCCTCCTCTGATTCCATATCCTTCCCTTTGT  487

seq1  ACTCGGCTTCTAGGTGTGGATCCAGGGTCTAGGGTCCCGCTAGTTCTACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGCTTCTAGGTGTGGATCCAGGGTCTAGGGTCCCGCTAGTTCTACT  537

seq1  CTGTCACCTCTTTGAGGCAGTACTCTTACCCATCTTTAAACCTGTATGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCTCTTTGAGGCAGTACTCTTACCCATCTTTAAACCTGTATGAT  587

seq1  TTCTCATAGAACCATAAAACTGCTCTTAACTAGAGATGCAGCAGCCTCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATAGAACCATAAAACTGCTCTTAACTAGAGATGCAGCAGCCTCCA  637

seq1  GACTTGGATAGGAAACAAAGTGGACAACAACCAAAGGACAGAACACTCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGATAGGAAACAAAGTGGACAACAACCAAAGGACAGAACACTCAC  687

seq1  CTAACAAAGGTGAAACAAAATATTCACATCAACAATCACTTCAAAGGCCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAAGGTGAAACAAAATATTCACATCAACAATCACTTCAAAGGCCA  737

seq1  TCGTTCCAGATACGTATATCCCAGAATGAAATCAGGAACATAAATAACCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCCAGATACGTATATCCCAGAATGAAATCAGGAACATAAATAACCA  787

seq1  AGACAATATGTCTCCTCTAGAAGCCAGTGGATCCAATCCATTAAAGACTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATATGTCTCCTCTAGAAGCCAGTGGATCCAATCCATTAAAGACTC  837

seq1  AGACACAGTGCCACATAGATACCGTAAACTGATTTTTTTTTTCGTAAACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGTGCCACATAGATACCGTAAACTGATTTTTTTTTTCGTAAACT  887

seq1  AATGTTTAATGAAGAAGTTAAAAAAAAAAAAACCACACTGGAGAAAAGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAATGAAGAAGTTAAAAAAAAAAAAACCACACTGGAGAAAAGAA  937

seq1  AGCATATTCAACAAATACTGCTAGTCAAACTGAATAGCTGTATGTAGAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTCAACAAATACTGCTAGTCAAACTGAATAGCTGTATGTAGAAG  987

seq1  AATTAAAATAGATCCGATTCTATCACTCTGTAGAAAAACTCAACTTGAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATAGATCCGATTCTATCACTCTGTAGAAAAACTCAACTTGAGA  1037

seq1  TAGATTAAAGTCCTCAATGTAAGAGCAGATAAAAGAGAAAAATAGGAAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAAAGTCCTCAATGTAAGAGCAGATAAAAGAGAAAAATAGGAAAT  1087

seq1  ACTCTTGAATTC  1108
      ||||||||||||
seq2  ACTCTTGAATTC  1099