BAC Information

Click to search

BAC

Clone NameB6Ng01-299A13
Chromosome19 (Build37)6 (Build37)
Map Location 30,317,884 - 30,318,401110,120,860 - 110,122,003
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneJak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2
Downstream geneLOC100042088, LOC668020, EG546723, Dkk1, Prkg1, LOC625995, Cstf2t, 8430431K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299A13.bB6Ng01-299A13.g
ACCGA093985GA093986
length1,0641,155
definitionB6Ng01-299A13.b B6Ng01-299A13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,317,884 - 30,318,401)(110,120,860 - 110,122,003)
sequence
gaattcagaaataaattaagttcattaagttaaaacattaactatctaat
catttctggatgttctttcatagatatataagacggtgttctattctgat
gttctaggagcttttcaactcaattaagctgaccatcttgtcaagatcaa
tcattgacctaacacaatttgatttaaggatattgtcctacataatctct
ggatttggtttatttaaatttgtattaacttttatccttgagaattttta
aattttttatttattttttattagatgatattttctttatatacatttca
aatgctatcctgaaagttccctataccctccctccaccttgctcacctac
ccactcactcctgcttcttggccctggaattcccctgcactggggcatat
aaagtttgcaataccaaggggcctctcttcccagtgatggccgactaggc
catcttctgctacataggcagctagagatatgagctctgggggtactggt
tagttcatattgtttttccacctatagggttgcagaccccttcagctcct
tgggtgctttctctagctcctccattggggaccctgtgttccatccaata
gatgactgtgagcatccacttctgtatttgccaggcactggcatagcctc
atacgagacaactacaacagggtcctttcagcaaaatctttctggcatat
gcaatagtgtctgggtttggtggctgactatgggatggatccccaggtga
ggtagtctctggatagtccatcctttcatcttagctccaaactttgtctc
tatatctcctttcatgggtattttgttccctattctaaggaggaatgaag
tatccacccattggtcttccctcttcttgattttcttttgttttgcaaat
tgtatcttggtgttctatgtttctgggctaatatccacttatcagtgagt
gcatgacttatttcgtgattgggttacctccactaaggatgatatcctcc
agaatacatccattttgttcaagaactttccataattcatttttttaata
gctgagtagtactc
gaattcagagtgataggttattcaaagactcagagctcttggcatctttg
acacatggctttctggactcagtggtacacccaggagaacctcattattc
cacttgagaatgggctgtgctttacctttcactttgccaaaggtagaaga
gattccttgcaattctggcgacaagagacttttcacacactgtttaacat
gcctgtccttagttttgtgaccaggacacattgcatattgagcttattga
aacttcttccctaaggatgctttactggtcactatcattttaacaaacta
cctataaaacaactatttttccataattcctttaaatcatttgaaggttt
attttcatcttaaagtcattatttattttgatttcctctttctaccttag
ttagctgccaccaaatacacatcaaagattctaagatttactaagcattg
tttaatgggctttaaacaatctaaaccatgggtgaataaagagacaagga
tttctctgacctgaaatctctgaagagaatgaaaactagttttctagtgg
tgtgggataggaggggttacatacagcatggggaggaggagttacaaaca
tcaggttgttattagttgacttctcaggaaagatttttatgtaggacatt
ttataattgtaaattattttcatattatgtgcaaaaagtggttgtttgtc
attgtcctatctaaaagcatattaaatatatgttaggagcaaaaaattta
ttgtccatcagtcatgtaaaaaagcacacacatttaaaagttataaaaaa
gaaaaacatattaaaaatataaaatttttaggcatgtcacagcaagatag
actcctggtaacaatttgccttagatttctcttttaacaaccaggagctt
tcttttttatacaaactgaatggatgatgttataaattgcttagagctga
tagagttcccaattaaaatcggtctgatttcatgcctctccccatcaaaa
tgttctgttgtattcttgaaatcttggtggatattctgatcctattaatg
aatcgggataaaatcagaaaggccaagcctgcagttccgttcagaagtcg
ccctgtatacaatttcttcctcagcagacaaccagtggttacacagctca
tctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_30317884_30318401
seq2: B6Ng01-299A13.b_623_1108 (reverse)

seq1  GAGTACTACTCAGCTATTAAACACAATGGAGTACTACTCAGCTGTTAAAC  50
                                  ||||||||||||||| ||||| 
seq2  ----------------------------GAGTACTACTCAGCTATTAAA-  21

seq1  ACAATGGAGTTATG--AAATTCTTGGA-TAAATGGATGTA-TCTGGAGGA  96
      | ||| || |||||  || |||||| |  ||||||||||| |||||||||
seq2  AAAAT-GAATTATGGAAAGTTCTTGAACAAAATGGATGTATTCTGGAGGA  70

seq1  TATCATCCTTAGT-GAGATAACCCAATCACAAAAGAAGTCATTAGATACG  145
      ||||||||||||| ||| |||||||||||| ||| |||||||       |
seq2  TATCATCCTTAGTGGAGGTAACCCAATCACGAAATAAGTCAT-------G  113

seq1  CACTCACTGATAAGTGGATATTAGCCCAGAAACATAGCACACCCAAGATA  195
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  CACTCACTGATAAGTGGATATTAGCCCAGAAACATAGAACA-CCAAGATA  162

seq1  CAATTTGCAAAACAGAAGACAATCAAGAAGAGGGAAGACCAATGGGTAGA  245
      |||||||||||||| |||| ||||||||||||||||||||||||||| ||
seq2  CAATTTGCAAAACAAAAGAAAATCAAGAAGAGGGAAGACCAATGGGTGGA  212

seq1  TACTTCATTCCTCCTCAGAATAGGGAACAAAATACCCATGAAAGGAGTTA  295
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  TACTTCATTCCTCCTTAGAATAGGGAACAAAATACCCATGAAAGGAGATA  262

seq1  CAGAGACAAAGTTTGGAGCTAAGATGAAAGGATGGACTATCCAGAGAATA  345
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGAGACAAAGTTTGGAGCTAAGATGAAAGGATGGACTATCCAGAGACTA  312

seq1  CCCCACCCGGGGATTCATCCCATAATCAGCCACCAAACCCAGACACTATT  395
      || |||| |||||| ||||||||| |||||||||||||||||||||||||
seq2  CCTCACCTGGGGATCCATCCCATAGTCAGCCACCAAACCCAGACACTATT  362

seq1  GCATATGCCAG-AAGATTTTGCTGAAGGGACTCTGTTATAGCTGTCTCGT  444
      ||||||||||| |||||||||||||| |||| ||||| ||| ||||||||
seq2  GCATATGCCAGAAAGATTTTGCTGAAAGGACCCTGTTGTAGTTGTCTCGT  412

seq1  ATGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCA  462

seq1  TCTATAAGATGGAACACAGGGCCC  518
      |||||  |||||||||||||| ||
seq2  TCTATTGGATGGAACACAGGGTCC  486

seq1: chr6_110120860_110122003
seq2: B6Ng01-299A13.g_67_1221

seq1  GAATTCAGAGTGATAGGTTATTCAAAGACTCAGAGCTCTTGGCATCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTGATAGGTTATTCAAAGACTCAGAGCTCTTGGCATCTTTG  50

seq1  ACACATGGCTTTCTGGACTCAGTGGTACACCCAGGAGAACCTCATTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGCTTTCTGGACTCAGTGGTACACCCAGGAGAACCTCATTATTC  100

seq1  CACTTGAGAATGGGCTGTGCTTTACCTTTCACTTTGCCAAAGGTAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGAATGGGCTGTGCTTTACCTTTCACTTTGCCAAAGGTAGAAGA  150

seq1  GATTCCTTGCAATTCTGGCGACAAGAGACTTTTCACACACTGTTTAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTTGCAATTCTGGCGACAAGAGACTTTTCACACACTGTTTAACAT  200

seq1  GCCTGTCCTTAGTTTTGTGACCAGGACACATTGCATATTGAGCTTATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCCTTAGTTTTGTGACCAGGACACATTGCATATTGAGCTTATTGA  250

seq1  AACTTCTTCCCTAAGGATGCTTTACTGGTCACTATCATTTTAACAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTCCCTAAGGATGCTTTACTGGTCACTATCATTTTAACAAACTA  300

seq1  CCTATAAAACAACTATTTTTCCATAATTCCTTTAAATCATTTGAAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAAACAACTATTTTTCCATAATTCCTTTAAATCATTTGAAGGTTT  350

seq1  ATTTTCATCTTAAAGTCATTATTTATTTTGATTTCCTCTTTCTACCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATCTTAAAGTCATTATTTATTTTGATTTCCTCTTTCTACCTTAG  400

seq1  TTAGCTGCCACCAAATACACATCAAAGATTCTAAGATTTACTAAGCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGCCACCAAATACACATCAAAGATTCTAAGATTTACTAAGCATTG  450

seq1  TTTAATGGGCTTTAAACAATCTAAACCATGGGTGAATAAAGAGACAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGGCTTTAAACAATCTAAACCATGGGTGAATAAAGAGACAAGGA  500

seq1  TTTCTCTGACCTGAAATCTCTGAAGAGAATGAAAACTAGTTTTCTAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGACCTGAAATCTCTGAAGAGAATGAAAACTAGTTTTCTAGTGG  550

seq1  TGTGGGATAGGAGGGGTTACATACAGCATGGGGAGGAGGAGTTACAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATAGGAGGGGTTACATACAGCATGGGGAGGAGGAGTTACAAACA  600

seq1  TCAGGTTGTTATTAGTTGACTTCTCAGGAAAGATTTTTATGTAGGACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTGTTATTAGTTGACTTCTCAGGAAAGATTTTTATGTAGGACATT  650

seq1  TTATAATTGTAAATTATTTTCATATTATGTGCAAAAAGTGGTTGTTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTGTAAATTATTTTCATATTATGTGCAAAAAGTGGTTGTTTGTC  700

seq1  ATTGTCCTATCTAAAAGCATATTAAATATATGTTAGGAGCAAAAAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTATCTAAAAGCATATTAAATATATGTTAGGAGCAAAAAATTTA  750

seq1  TTGTCCATCAGTCATGTAAAAAAGCACACACATTTAAAAGTTATAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATCAGTCATGTAAAAAAGCACACACATTTAAAAGTTATAAAAAA  800

seq1  GAAAAACATATTAAAAATATAAAATTTTTAGGCATGTCACAGCAAGATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACATATTAAAAATATAAAATTTTTAGGCATGTCACAGCAAGATAG  850

seq1  ACTCCTGGTAACAATTTGCCTTAGATTTCTCTTTTAACAACCAGGAGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGTAACAATTTGCCTTAGATTTCTCTTTTAACAACCAGGAGCTT  900

seq1  TCTTTTTTATACAAACTGAATGGATGATGTTATAAATTGCTTAGAGCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTATACAAACTGAATGGATGATGTTATAAATTGCTTAGAGCTGA  950

seq1  TAGAGTT-CCAATTAAAATCGGTCTGATTTCATG-CTCTCCCCATCAAAA  998
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  TAGAGTTCCCAATTAAAATCGGTCTGATTTCATGCCTCTCCCCATCAAAA  1000

seq1  TG-TCTTGTGTATTCTTGAAATCT--GT-GATATT-TGATCCTATTAATG  1043
      || |||  ||||||||||||||||  || |||||| ||||||||||||||
seq2  TGTTCTGTTGTATTCTTGAAATCTTGGTGGATATTCTGATCCTATTAATG  1050

seq1  AATCGG--TAAAATCAGAAGGCCCAGGCCCTGCAGTT-CGTTCAG-AGTC  1089
      ||||||  ||||||||||| | ||| | ||||||||| ||||||| ||||
seq2  AATCGGGATAAAATCAGAAAGGCCAAG-CCTGCAGTTCCGTTCAGAAGTC  1099

seq1  GCCCT-TGTACCATTTCCTTCTCAGGCAG-CAAACAGTGGTACCACAGCT  1137
      ||||| | ||| ||||| | |||| |||| ||| |||||||  |||||||
seq2  GCCCTGTATACAATTTCTTCCTCA-GCAGACAACCAGTGGTTACACAGCT  1148

seq1  CATCTCT  1144
      |||||||
seq2  CATCTCT  1155